Wall clock time and date at job start Mon Mar 30 2020 01:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48500 * 109.47389 * 270.00153 * 3 2 1 5 5 H 1.48500 * 109.46766 * 30.00406 * 3 2 1 6 6 H 1.48497 * 109.46909 * 149.99906 * 3 2 1 7 7 C 1.37873 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00084 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00100 * 179.97438 * 7 2 1 10 10 O 1.42100 * 106.40335 * 66.45633 * 9 7 2 11 11 O 1.42096 * 106.40293 * 293.53788 * 9 7 2 12 12 N 1.65603 * 107.21903 * 179.97438 * 9 7 2 13 13 C 1.47023 * 120.76153 * 49.48524 * 12 9 7 14 14 C 1.53158 * 108.86755 * 126.81921 * 13 12 9 15 15 C 1.53060 * 109.52548 * 54.19235 * 14 13 12 16 16 C 1.53352 * 109.25711 * 298.54187 * 15 14 13 17 17 H 1.08999 * 110.32038 * 182.37756 * 16 15 14 18 18 C 1.53069 * 108.77696 * 302.72379 * 16 15 14 19 19 C 1.51697 * 110.40004 * 177.15383 * 18 16 15 20 20 C 1.53059 * 109.44245 * 299.93158 * 19 18 16 21 21 C 1.52965 * 109.21167 * 60.38932 * 20 19 18 22 22 C 1.46741 * 120.76101 * 229.46547 * 12 9 7 23 23 H 1.08995 * 109.30439 * 114.87636 * 22 12 9 24 24 H 0.96994 * 120.00258 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.57472 * 246.63961 * 13 12 9 26 26 H 1.09001 * 109.56952 * 7.00854 * 13 12 9 27 27 H 1.08997 * 109.46359 * 174.21084 * 14 13 12 28 28 H 1.09002 * 109.45979 * 294.17842 * 14 13 12 29 29 H 1.09001 * 109.50566 * 178.60574 * 15 14 13 30 30 H 1.09001 * 109.50280 * 58.47569 * 15 14 13 31 31 H 1.09000 * 109.42566 * 297.87128 * 18 16 15 32 32 H 1.09004 * 109.42437 * 57.70391 * 18 16 15 33 33 H 1.09004 * 109.66652 * 179.78899 * 19 18 16 34 34 H 1.08995 * 109.19965 * 59.79113 * 19 18 16 35 35 H 1.08998 * 109.51481 * 300.46332 * 20 19 18 36 36 H 1.09004 * 109.55413 * 180.33363 * 20 19 18 37 37 H 1.09001 * 109.39491 * 180.11454 * 21 20 19 38 38 H 1.08995 * 109.32789 * 60.33864 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1940 -0.0012 10 8 4.1683 -0.6498 1.2484 11 8 4.1673 -0.6494 -1.2510 12 7 4.2568 -2.7758 -0.0011 13 6 3.6950 -3.7373 -0.9611 14 6 4.8447 -4.4276 -1.7009 15 6 5.8127 -5.0392 -0.6851 16 6 6.4008 -3.9240 0.1879 17 1 7.1252 -4.3356 0.8907 18 6 7.0869 -2.8988 -0.7184 19 6 7.6222 -1.7413 0.1031 20 6 6.4652 -1.0601 0.8379 21 6 5.7941 -2.0722 1.7679 22 6 5.2621 -3.2499 0.9570 23 1 4.8043 -3.9739 1.6310 24 1 -0.4850 0.8400 -0.0004 25 1 3.1040 -4.4823 -0.4284 26 1 3.0635 -3.2115 -1.6772 27 1 4.4446 -5.2143 -2.3405 28 1 5.3739 -3.6967 -2.3124 29 1 6.6175 -5.5516 -1.2122 30 1 5.2781 -5.7506 -0.0557 31 1 7.9072 -3.3786 -1.2524 32 1 6.3656 -2.5102 -1.4373 33 1 8.1112 -1.0211 -0.5529 34 1 8.3420 -2.1196 0.8290 35 1 5.7385 -0.6941 0.1127 36 1 6.8471 -0.2243 1.4242 37 1 4.9681 -1.5906 2.2914 38 1 6.5222 -2.4325 2.4946 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044509771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:25 Heat of formation + Delta-G solvation = -56.722165 kcal Electronic energy + Delta-G solvation = -21695.715615 eV Core-core repulsion = 18665.704524 eV Total energy + Delta-G solvation = -3030.011091 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.83219 -36.19388 -35.05986 -34.15450 -33.10044 -32.65784 -30.09689 -28.79497 -26.40452 -24.48114 -22.66591 -22.30831 -20.66357 -19.25818 -17.89918 -17.32657 -16.58129 -15.32649 -15.27701 -14.89687 -14.51515 -14.26893 -14.05430 -13.72752 -13.15370 -13.10363 -12.80763 -12.53912 -12.12571 -12.01970 -11.68974 -11.49777 -11.29795 -11.10272 -11.00451 -10.83944 -10.63012 -10.40729 -10.34115 -10.08335 -9.91071 -9.84874 -9.61488 -9.23553 -8.99840 -8.61534 -8.09578 -6.80795 -5.34385 2.06218 3.06456 3.16963 3.25685 3.94661 4.17485 4.59313 4.89639 4.93496 5.02826 5.26308 5.29906 5.37233 5.51279 5.55421 5.64582 5.69899 5.85399 5.86514 5.88473 6.00540 6.04176 6.09745 6.14632 6.22967 6.27080 6.32816 6.42753 6.49971 6.52497 6.62155 6.68350 6.77281 6.92308 7.35745 7.43329 7.53434 8.19303 8.70211 10.31627 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027202 B = 0.009418 C = 0.008055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.072305 B = 2972.230570 C = 3475.182119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.153 3.847 3 Si 0.799 3.201 4 H -0.247 1.247 5 H -0.255 1.255 6 H -0.216 1.216 7 C -1.023 5.023 8 H 0.120 0.880 9 S 2.682 3.318 10 O -0.998 6.998 11 O -1.013 7.013 12 N -0.994 5.994 13 C 0.130 3.870 14 C -0.138 4.138 15 C -0.109 4.109 16 C -0.096 4.096 17 H 0.074 0.926 18 C -0.122 4.122 19 C -0.126 4.126 20 C -0.109 4.109 21 C -0.171 4.171 22 C 0.168 3.832 23 H 0.066 0.934 24 H 0.280 0.720 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.068 0.932 37 H 0.152 0.848 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.931 -7.848 0.363 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.066 4.066 3 Si 0.619 3.381 4 H -0.171 1.171 5 H -0.179 1.179 6 H -0.138 1.138 7 C -1.157 5.157 8 H 0.138 0.862 9 S 2.788 3.212 10 O -0.988 6.988 11 O -1.003 7.003 12 N -0.831 5.831 13 C 0.004 3.996 14 C -0.177 4.177 15 C -0.147 4.147 16 C -0.116 4.116 17 H 0.093 0.907 18 C -0.159 4.159 19 C -0.163 4.163 20 C -0.147 4.147 21 C -0.210 4.210 22 C 0.062 3.938 23 H 0.084 0.916 24 H 0.091 0.909 25 H 0.078 0.922 26 H 0.103 0.897 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.087 0.913 37 H 0.169 0.831 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 11.304 -7.015 0.343 13.308 hybrid contribution -0.498 0.357 -0.128 0.626 sum 10.806 -6.658 0.216 12.694 Atomic orbital electron populations 1.69987 1.06601 1.29025 1.39683 1.24418 0.94778 0.98775 0.88607 0.87891 0.83780 0.84536 0.81873 1.17113 1.17924 1.13833 1.30523 1.16102 1.02167 1.66874 0.86226 1.01438 0.75725 0.70465 0.73588 1.93382 1.84327 1.77288 1.43813 1.93400 1.84881 1.75967 1.46027 1.57537 1.53022 1.28090 1.44460 1.21234 0.94727 0.92611 0.91054 1.21978 0.97466 1.00103 0.98129 1.21541 0.98435 0.97084 0.97635 1.21551 0.96937 0.95696 0.97390 0.90725 1.21457 0.99904 0.95880 0.98649 1.21463 0.98192 0.97622 0.99051 1.21800 0.96546 0.98265 0.98091 1.22895 1.04121 0.94913 0.99028 1.20722 0.87481 0.96453 0.89193 0.91641 0.90917 0.92153 0.89743 0.91523 0.90896 0.92334 0.92049 0.92581 0.90606 0.92365 0.92395 0.94038 0.91320 0.83133 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.96 13.96 55.43 0.77 -23.18 16 2 C 0.15 4.45 5.47 -17.82 -0.10 4.35 16 3 Si 0.80 20.65 26.54 -169.99 -4.51 16.14 16 4 H -0.25 -6.30 7.11 56.52 0.40 -5.89 16 5 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 6 H -0.22 -5.59 5.61 56.52 0.32 -5.27 16 7 C -1.02 -28.80 9.76 30.60 0.30 -28.50 16 8 H 0.12 3.40 8.06 -52.48 -0.42 2.97 16 9 S 2.68 66.98 2.01 -107.50 -0.22 66.76 16 10 O -1.00 -25.13 9.33 -57.17 -0.53 -25.67 16 11 O -1.01 -27.37 15.83 -57.17 -0.91 -28.28 16 12 N -0.99 -19.72 2.62 -106.86 -0.28 -20.00 16 13 C 0.13 2.24 6.28 -3.68 -0.02 2.22 16 14 C -0.14 -1.94 5.70 -26.62 -0.15 -2.09 16 15 C -0.11 -1.37 5.44 -26.52 -0.14 -1.51 16 16 C -0.10 -1.34 2.66 -90.37 -0.24 -1.58 16 17 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 18 C -0.12 -1.83 4.57 -27.36 -0.13 -1.96 16 19 C -0.13 -1.94 5.89 -27.36 -0.16 -2.10 16 20 C -0.11 -2.06 4.66 -26.72 -0.12 -2.19 16 21 C -0.17 -3.04 4.82 -26.97 -0.13 -3.17 16 22 C 0.17 2.83 2.99 -67.99 -0.20 2.63 16 23 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 24 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 1.56 7.74 -51.93 -0.40 1.16 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.07 1.10 6.17 -51.93 -0.32 0.78 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.34 5.72 -51.93 -0.30 1.04 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.04 0.93 3.50 -26.28 -0.09 0.83 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.15 3.08 5.13 -56.19 -0.29 2.79 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 282.53 15.07 4.26 4.26 Total: -1.00 -31.06 282.53 -8.21 -39.27 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.69 Total: 4.60 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: -1.10 Total: -33.90 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.49 Total: -43.18 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -1.44 Total: -53.95 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.51 Total: 16.14 kcal Atomic # 16 Polarization: 66.98 SS G_CDS: -0.22 Total: 66.76 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -31.06 -8.21 -39.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.450 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds