Wall clock time and date at job start Mon Mar 30 2020 01:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00071 * 2 1 4 4 H 1.48500 * 109.47389 * 270.00153 * 3 2 1 5 5 H 1.48500 * 109.46766 * 30.00406 * 3 2 1 6 6 H 1.48497 * 109.46909 * 149.99906 * 3 2 1 7 7 C 1.37873 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00084 * 359.97438 * 7 2 1 9 9 S 1.76201 * 120.00100 * 179.97438 * 7 2 1 10 10 O 1.42100 * 106.40335 * 66.45633 * 9 7 2 11 11 O 1.42096 * 106.40293 * 293.53788 * 9 7 2 12 12 N 1.65603 * 107.21903 * 179.97438 * 9 7 2 13 13 C 1.47023 * 120.76153 * 49.48524 * 12 9 7 14 14 C 1.53158 * 108.86755 * 126.81921 * 13 12 9 15 15 C 1.53060 * 109.52548 * 54.19235 * 14 13 12 16 16 C 1.53352 * 109.25711 * 298.54187 * 15 14 13 17 17 H 1.08999 * 110.32038 * 182.37756 * 16 15 14 18 18 C 1.53069 * 108.77696 * 302.72379 * 16 15 14 19 19 C 1.51697 * 110.40004 * 177.15383 * 18 16 15 20 20 C 1.53059 * 109.44245 * 299.93158 * 19 18 16 21 21 C 1.52965 * 109.21167 * 60.38932 * 20 19 18 22 22 C 1.46741 * 120.76101 * 229.46547 * 12 9 7 23 23 H 1.08995 * 109.30439 * 114.87636 * 22 12 9 24 24 H 0.96994 * 120.00258 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.57472 * 246.63961 * 13 12 9 26 26 H 1.09001 * 109.56952 * 7.00854 * 13 12 9 27 27 H 1.08997 * 109.46359 * 174.21084 * 14 13 12 28 28 H 1.09002 * 109.45979 * 294.17842 * 14 13 12 29 29 H 1.09001 * 109.50566 * 178.60574 * 15 14 13 30 30 H 1.09001 * 109.50280 * 58.47569 * 15 14 13 31 31 H 1.09000 * 109.42566 * 297.87128 * 18 16 15 32 32 H 1.09004 * 109.42437 * 57.70391 * 18 16 15 33 33 H 1.09004 * 109.66652 * 179.78899 * 19 18 16 34 34 H 1.08995 * 109.19965 * 59.79113 * 19 18 16 35 35 H 1.08998 * 109.51481 * 300.46332 * 20 19 18 36 36 H 1.09004 * 109.55413 * 180.33363 * 20 19 18 37 37 H 1.09001 * 109.39491 * 180.11454 * 21 20 19 38 38 H 1.08995 * 109.32789 * 60.33864 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1940 -0.0012 10 8 4.1683 -0.6498 1.2484 11 8 4.1673 -0.6494 -1.2510 12 7 4.2568 -2.7758 -0.0011 13 6 3.6950 -3.7373 -0.9611 14 6 4.8447 -4.4276 -1.7009 15 6 5.8127 -5.0392 -0.6851 16 6 6.4008 -3.9240 0.1879 17 1 7.1252 -4.3356 0.8907 18 6 7.0869 -2.8988 -0.7184 19 6 7.6222 -1.7413 0.1031 20 6 6.4652 -1.0601 0.8379 21 6 5.7941 -2.0722 1.7679 22 6 5.2621 -3.2499 0.9570 23 1 4.8043 -3.9739 1.6310 24 1 -0.4850 0.8400 -0.0004 25 1 3.1040 -4.4823 -0.4284 26 1 3.0635 -3.2115 -1.6772 27 1 4.4446 -5.2143 -2.3405 28 1 5.3739 -3.6967 -2.3124 29 1 6.6175 -5.5516 -1.2122 30 1 5.2781 -5.7506 -0.0557 31 1 7.9072 -3.3786 -1.2524 32 1 6.3656 -2.5102 -1.4373 33 1 8.1112 -1.0211 -0.5529 34 1 8.3420 -2.1196 0.8290 35 1 5.7385 -0.6941 0.1127 36 1 6.8471 -0.2243 1.4242 37 1 4.9681 -1.5906 2.2914 38 1 6.5222 -2.4325 2.4946 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044509771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:24 Heat of formation + Delta-G solvation = -78.660266 kcal Electronic energy + Delta-G solvation = -21696.666922 eV Core-core repulsion = 18665.704524 eV Total energy + Delta-G solvation = -3030.962398 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.10015 -37.96799 -36.91103 -35.74863 -35.22087 -34.02282 -31.34617 -30.10119 -28.55531 -25.75445 -23.93316 -23.58791 -22.03585 -20.93554 -19.60406 -19.04619 -18.38790 -17.00975 -16.78173 -16.36441 -16.20256 -15.72218 -15.56198 -15.16999 -15.09104 -14.45562 -14.31019 -14.06010 -13.45583 -13.40862 -13.34668 -13.17827 -13.05980 -12.89933 -12.52965 -12.33597 -12.10360 -11.97167 -11.81001 -11.56230 -11.46072 -11.37258 -11.07053 -10.94415 -10.78985 -10.22570 -9.57904 -9.01116 -7.55752 0.18925 0.99002 1.07963 1.16077 1.84159 2.37901 2.49460 3.31100 3.67599 3.83263 3.85647 4.01799 4.13065 4.26654 4.32866 4.37235 4.44152 4.48850 4.62124 4.65287 4.72582 4.83957 4.87351 4.97180 5.07228 5.09484 5.17437 5.21108 5.26619 5.27154 5.34387 5.37493 5.49649 5.56592 5.65785 5.89580 5.97609 6.03464 6.49765 8.16885 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027202 B = 0.009418 C = 0.008055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.072305 B = 2972.230570 C = 3475.182119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.108 3.892 3 Si 0.822 3.178 4 H -0.246 1.246 5 H -0.217 1.217 6 H -0.222 1.222 7 C -1.051 5.051 8 H 0.101 0.899 9 S 2.701 3.299 10 O -1.005 7.005 11 O -1.042 7.042 12 N -0.991 5.991 13 C 0.117 3.883 14 C -0.134 4.134 15 C -0.105 4.105 16 C -0.090 4.090 17 H 0.110 0.890 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.172 4.172 22 C 0.156 3.844 23 H 0.085 0.915 24 H 0.291 0.709 25 H 0.079 0.921 26 H 0.056 0.944 27 H 0.093 0.907 28 H 0.057 0.943 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.000 1.000 36 H 0.067 0.933 37 H 0.118 0.882 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.492 -9.823 0.968 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.108 4.108 3 Si 0.639 3.361 4 H -0.169 1.169 5 H -0.139 1.139 6 H -0.144 1.144 7 C -1.182 5.182 8 H 0.120 0.880 9 S 2.805 3.195 10 O -0.995 6.995 11 O -1.032 7.032 12 N -0.832 5.832 13 C -0.008 4.008 14 C -0.173 4.173 15 C -0.142 4.142 16 C -0.110 4.110 17 H 0.128 0.872 18 C -0.162 4.162 19 C -0.159 4.159 20 C -0.159 4.159 21 C -0.211 4.211 22 C 0.050 3.950 23 H 0.103 0.897 24 H 0.101 0.899 25 H 0.097 0.903 26 H 0.075 0.925 27 H 0.112 0.888 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.019 0.981 36 H 0.085 0.915 37 H 0.135 0.865 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 13.819 -8.973 0.951 16.504 hybrid contribution -1.283 0.890 -0.298 1.589 sum 12.536 -8.083 0.654 14.930 Atomic orbital electron populations 1.70012 1.07444 1.30426 1.40675 1.25160 0.95636 1.01419 0.88604 0.87526 0.83326 0.82858 0.82380 1.16944 1.13940 1.14421 1.31183 1.19120 1.01500 1.66361 0.88049 1.00835 0.73729 0.72013 0.72920 1.93438 1.83632 1.78879 1.43594 1.93349 1.84596 1.77717 1.47511 1.57233 1.53649 1.26575 1.45770 1.21507 0.96288 0.92275 0.90736 1.21974 0.96548 1.00220 0.98560 1.21564 0.98781 0.96670 0.97191 1.21604 0.96143 0.95522 0.97717 0.87170 1.21500 1.00133 0.96165 0.98369 1.21458 0.97260 0.97669 0.99552 1.21888 0.97145 0.99128 0.97744 1.22779 1.03903 0.94975 0.99432 1.21137 0.88024 0.96501 0.89300 0.89691 0.89867 0.90313 0.92496 0.88825 0.92431 0.89508 0.90433 0.89624 0.94069 0.92477 0.89064 0.98141 0.91465 0.86458 0.88184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -51.11 13.96 21.45 0.30 -50.81 16 2 C 0.11 6.45 5.47 84.65 0.46 6.92 16 3 Si 0.82 42.58 26.54 68.60 1.82 44.40 16 4 H -0.25 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.22 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.22 -11.64 5.61 99.48 0.56 -11.08 16 7 C -1.05 -61.72 9.76 67.73 0.66 -61.06 16 8 H 0.10 6.09 8.06 -2.91 -0.02 6.06 16 9 S 2.70 138.90 2.01 -56.49 -0.11 138.79 16 10 O -1.01 -51.94 9.33 -128.00 -1.19 -53.14 16 11 O -1.04 -58.55 15.83 -128.00 -2.03 -60.58 16 12 N -0.99 -39.12 2.62 -492.01 -1.29 -40.42 16 13 C 0.12 4.00 6.28 86.33 0.54 4.54 16 14 C -0.13 -3.45 5.70 30.67 0.17 -3.28 16 15 C -0.10 -2.11 5.44 30.73 0.17 -1.94 16 16 C -0.09 -2.12 2.66 -10.63 -0.03 -2.15 16 17 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 18 C -0.12 -3.34 4.57 30.19 0.14 -3.21 16 19 C -0.12 -3.42 5.89 30.19 0.18 -3.25 16 20 C -0.12 -4.46 4.66 30.60 0.14 -4.32 16 21 C -0.17 -5.79 4.82 30.44 0.15 -5.65 16 22 C 0.16 4.85 2.99 44.82 0.13 4.99 16 23 H 0.09 2.32 8.14 -2.39 -0.02 2.31 16 24 H 0.29 15.63 8.31 -92.71 -0.77 14.86 16 25 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 26 H 0.06 2.21 7.74 -2.39 -0.02 2.19 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.06 1.67 6.17 -2.39 -0.01 1.66 16 29 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.04 1.41 5.72 -2.39 -0.01 1.39 16 33 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.00 0.01 3.50 -18.69 -0.07 -0.05 16 36 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.12 4.79 5.13 -69.91 -0.36 4.43 16 38 H 0.10 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -71.10 282.53 0.71 -70.40 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: 0.49 Total: 19.75 kcal Atomic # 6 Polarization: -71.11 SS G_CDS: 2.72 Total: -68.39 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -0.99 Total: -91.22 kcal Atomic # 8 Polarization: -110.49 SS G_CDS: -3.22 Total: -113.72 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.82 Total: 44.40 kcal Atomic # 16 Polarization: 138.90 SS G_CDS: -0.11 Total: 138.79 kcal Total: -71.10 0.71 -70.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044509771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.262 kcal (2) G-P(sol) polarization free energy of solvation -71.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds