Wall clock time and date at job start Mon Mar 30 2020 01:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50697 * 110.54392 * 2 1 4 4 C 1.38226 * 120.00674 * 177.37195 * 3 2 1 5 5 C 1.38236 * 120.00472 * 179.79072 * 4 3 2 6 6 C 1.38232 * 119.99988 * 0.45839 * 5 4 3 7 7 C 1.38240 * 119.99573 * 359.77567 * 6 5 4 8 8 C 1.38226 * 120.00332 * 0.02562 * 7 6 5 9 9 C 1.54231 * 110.73889 * 237.06077 * 2 1 3 10 10 C 1.51311 * 103.55679 * 241.19762 * 9 2 1 11 11 O 1.21229 * 125.39896 * 180.25346 * 10 9 2 12 12 N 1.33875 * 109.20570 * 0.38224 * 10 9 2 13 13 C 1.46496 * 122.76256 * 179.83878 * 12 10 9 14 14 C 1.50699 * 109.47484 * 269.71568 * 13 12 10 15 15 H 1.07998 * 120.00060 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99988 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99951 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99959 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47109 * 179.97438 * 18 16 14 20 20 H 1.48502 * 109.47044 * 299.99924 * 18 16 14 21 21 H 1.48495 * 109.47163 * 59.99934 * 18 16 14 22 22 C 1.33880 * 114.47396 * 359.58215 * 12 10 9 23 23 O 1.21228 * 125.39260 * 180.24772 * 22 12 10 24 24 H 1.08994 * 109.46922 * 298.60127 * 1 2 3 25 25 H 1.08998 * 109.46850 * 58.60617 * 1 2 3 26 26 H 1.09000 * 109.46861 * 178.60454 * 1 2 3 27 27 H 1.08009 * 119.99657 * 0.02562 * 4 3 2 28 28 H 1.08003 * 120.00125 * 180.25507 * 5 4 3 29 29 H 1.07994 * 120.00306 * 179.79087 * 6 5 4 30 30 H 1.08007 * 119.99577 * 179.97438 * 7 6 5 31 31 H 1.08003 * 120.00049 * 179.97438 * 8 7 6 32 32 H 1.08999 * 110.60714 * 359.93747 * 9 2 1 33 33 H 1.08996 * 110.60456 * 122.90022 * 9 2 1 34 34 H 1.09006 * 109.47379 * 149.71495 * 13 12 10 35 35 H 1.09009 * 109.47210 * 29.71958 * 13 12 10 36 36 H 0.96998 * 119.99705 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0589 1.4111 0.0000 4 6 3.4211 1.6388 0.0549 5 6 3.9064 2.9332 0.0505 6 6 3.0289 4.0001 0.0008 7 6 1.6663 3.7725 -0.0492 8 6 1.1812 2.4782 -0.0490 9 6 2.0762 -0.7843 -1.2105 10 6 2.8645 -1.9100 -0.5774 11 8 3.4698 -2.7695 -1.1811 12 7 2.7854 -1.8079 0.7551 13 6 3.4408 -2.7527 1.6629 14 6 2.4987 -3.8873 1.9729 15 1 1.5104 -3.9029 1.5377 16 6 2.8985 -4.9055 2.8123 17 7 4.1021 -4.8868 3.3419 18 14 1.7310 -6.3123 3.1961 19 1 2.3957 -7.2705 4.1153 20 1 0.5052 -5.7764 3.8407 21 1 1.3641 -7.0086 1.9369 22 6 2.0625 -0.7683 1.1898 23 8 1.8656 -0.4871 2.3525 24 1 -0.3633 0.4919 0.9022 25 1 -0.3633 0.5353 -0.8772 26 1 -0.3633 -1.0274 -0.0250 27 1 4.1067 0.8053 0.0974 28 1 4.9710 3.1110 0.0892 29 1 3.4078 5.0114 0.0008 30 1 0.9806 4.6062 -0.0876 31 1 0.1166 2.3004 -0.0876 32 1 1.2579 -1.1768 -1.8142 33 1 2.7303 -0.1537 -1.8127 34 1 3.7102 -2.2413 2.5871 35 1 4.3406 -3.1464 1.1899 36 1 4.3832 -5.6029 3.9327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048347822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:09 Heat of formation + Delta-G solvation = -63.716367 kcal Electronic energy + Delta-G solvation = -21002.145863 eV Core-core repulsion = 17836.387530 eV Total energy + Delta-G solvation = -3165.758334 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.14027 -40.17707 -39.44728 -36.98756 -36.31008 -34.72931 -32.01417 -31.31856 -29.91711 -28.62297 -26.14707 -25.14192 -23.74769 -23.17449 -21.68464 -20.29109 -19.06545 -18.32255 -18.00937 -17.28735 -16.97623 -16.57725 -15.89623 -15.83661 -15.71368 -15.24438 -14.94278 -14.79151 -14.42142 -14.24940 -13.97274 -13.74596 -13.47427 -13.27979 -13.09327 -12.74962 -12.71587 -12.65327 -12.36087 -12.03773 -11.94126 -11.77454 -11.40790 -10.96942 -10.74822 -10.57186 -9.81567 -9.66003 -8.37658 -6.53646 0.33050 0.48661 0.54511 1.32432 1.37536 1.44919 1.73423 1.86794 2.31857 2.76415 2.94669 3.14408 3.25078 3.42688 3.58354 3.86382 4.11093 4.17336 4.32086 4.52309 4.57524 4.58358 4.61321 4.70223 4.75781 4.80253 4.87394 4.92497 5.05260 5.15567 5.19893 5.50641 5.57941 5.61913 5.63212 5.78836 6.06801 6.10554 6.45505 6.49580 6.84445 7.17568 8.72596 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.028292 B = 0.005079 C = 0.005058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.439160 B = 5511.892352 C = 5533.962506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.044 4.044 3 C -0.079 4.079 4 C -0.138 4.138 5 C -0.126 4.126 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.106 4.106 9 C -0.129 4.129 10 C 0.515 3.485 11 O -0.526 6.526 12 N -0.570 5.570 13 C 0.245 3.755 14 C -0.557 4.557 15 H 0.057 0.943 16 C 0.011 3.989 17 N -0.924 5.924 18 Si 0.977 3.023 19 H -0.272 1.272 20 H -0.266 1.266 21 H -0.265 1.265 22 C 0.528 3.472 23 O -0.518 6.518 24 H 0.071 0.929 25 H 0.121 0.879 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.134 0.866 29 H 0.149 0.851 30 H 0.156 0.844 31 H 0.155 0.845 32 H 0.157 0.843 33 H 0.141 0.859 34 H 0.019 0.981 35 H 0.022 0.978 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.895 18.311 -10.881 22.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 C -0.079 4.079 4 C -0.156 4.156 5 C -0.143 4.143 6 C -0.136 4.136 7 C -0.135 4.135 8 C -0.123 4.123 9 C -0.168 4.168 10 C 0.306 3.694 11 O -0.401 6.401 12 N -0.310 5.310 13 C 0.125 3.875 14 C -0.595 4.595 15 H 0.075 0.925 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.799 3.201 19 H -0.197 1.197 20 H -0.191 1.191 21 H -0.190 1.190 22 C 0.318 3.682 23 O -0.392 6.392 24 H 0.090 0.910 25 H 0.140 0.860 26 H 0.082 0.918 27 H 0.113 0.887 28 H 0.152 0.848 29 H 0.167 0.833 30 H 0.174 0.826 31 H 0.173 0.827 32 H 0.175 0.825 33 H 0.159 0.841 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.518 17.877 -10.430 22.021 hybrid contribution 0.466 -1.395 0.894 1.721 sum -7.052 16.482 -9.536 20.306 Atomic orbital electron populations 1.21929 0.87711 1.04001 1.05396 1.20412 1.00469 0.92928 0.90929 1.19248 0.93638 0.92271 1.02736 1.21077 0.95078 0.97872 1.01559 1.21323 1.01032 0.92003 0.99985 1.21554 0.93740 0.99674 0.98652 1.21564 0.95995 0.97197 0.98728 1.21428 1.00799 0.91623 0.98489 1.22839 1.02354 0.93943 0.97644 1.21610 0.79696 0.86393 0.81670 1.90688 1.43322 1.38871 1.67224 1.47139 1.46413 1.27195 1.10227 1.19053 0.93247 0.87270 0.87913 1.21458 1.00528 1.07348 1.30204 0.92466 1.25940 0.97309 1.00975 0.94666 1.70038 1.19792 1.34644 1.31741 0.85331 0.78448 0.77699 0.78593 1.19701 1.19074 1.18995 1.21353 0.76337 0.79701 0.90856 1.90656 1.57425 1.69730 1.21382 0.91032 0.86030 0.91770 0.88728 0.84827 0.83320 0.82637 0.82727 0.82510 0.84072 0.96322 0.95990 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.66 7.09 71.98 0.51 -2.15 16 2 C -0.04 -1.20 0.90 -53.06 -0.05 -1.25 16 3 C -0.08 -1.93 4.77 -19.87 -0.09 -2.02 16 4 C -0.14 -3.66 8.63 22.27 0.19 -3.47 16 5 C -0.13 -2.68 10.05 22.27 0.22 -2.46 16 6 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 7 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 8 C -0.11 -1.93 9.05 22.27 0.20 -1.73 16 9 C -0.13 -3.25 6.11 30.46 0.19 -3.07 16 10 C 0.52 20.82 8.08 87.99 0.71 21.53 16 11 O -0.53 -25.13 17.47 -2.87 -0.05 -25.18 16 12 N -0.57 -26.48 2.54 -760.72 -1.93 -28.41 16 13 C 0.24 14.14 5.31 85.63 0.45 14.59 16 14 C -0.56 -33.59 9.39 25.60 0.24 -33.35 16 15 H 0.06 3.37 7.81 -2.91 -0.02 3.34 16 16 C 0.01 0.67 5.46 84.66 0.46 1.13 16 17 N -0.92 -57.10 13.29 21.45 0.28 -56.82 16 18 Si 0.98 45.60 29.54 68.60 2.03 47.63 16 19 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 22 C 0.53 21.88 6.21 87.99 0.55 22.43 16 23 O -0.52 -25.44 17.48 -2.87 -0.05 -25.49 16 24 H 0.07 1.50 7.77 -2.39 -0.02 1.49 16 25 H 0.12 1.33 7.39 -2.39 -0.02 1.31 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.09 2.88 7.95 -2.91 -0.02 2.86 16 28 H 0.13 2.42 8.06 -2.91 -0.02 2.39 16 29 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 30 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 31 H 0.16 1.98 6.01 -2.91 -0.02 1.96 16 32 H 0.16 2.83 7.74 -2.39 -0.02 2.82 16 33 H 0.14 2.90 7.40 -2.39 -0.02 2.88 16 34 H 0.02 1.17 7.83 -2.38 -0.02 1.15 16 35 H 0.02 1.36 7.82 -2.38 -0.02 1.35 16 36 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -80.01 311.10 5.40 -74.61 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.09 Total: 6.78 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 4.03 Total: 6.87 kcal Atomic # 7 Polarization: -83.58 SS G_CDS: -1.65 Total: -85.23 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.10 Total: -50.67 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -80.01 5.40 -74.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048347822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.895 kcal (2) G-P(sol) polarization free energy of solvation -80.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds