Wall clock time and date at job start Mon Mar 30 2020 01:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 110.54294 * 2 1 4 4 C 1.38230 * 120.00146 * 185.31634 * 3 2 1 5 5 C 1.38233 * 120.00352 * 180.02562 * 4 3 2 6 6 C 1.38241 * 119.99546 * 0.02562 * 5 4 3 7 7 C 1.38228 * 119.99953 * 359.97330 * 6 5 4 8 8 C 1.38231 * 120.00631 * 0.05008 * 7 6 5 9 9 C 1.54221 * 110.60585 * 122.85363 * 2 1 3 10 10 C 1.51683 * 103.38596 * 118.70936 * 9 2 1 11 11 O 1.21221 * 125.36351 * 179.97438 * 10 9 2 12 12 N 1.33876 * 109.23631 * 359.87460 * 10 9 2 13 13 C 1.46499 * 122.76140 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47317 * 270.00539 * 13 12 10 15 15 H 1.08000 * 120.00107 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00054 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99800 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00000 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47428 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47099 * 120.00229 * 18 16 14 21 21 H 1.48497 * 109.47418 * 239.99987 * 18 16 14 22 22 C 1.33883 * 114.47882 * 0.08547 * 12 10 9 23 23 O 1.21219 * 125.39869 * 180.02562 * 22 12 10 24 24 H 1.09004 * 109.47013 * 59.28969 * 1 2 3 25 25 H 1.08997 * 109.47037 * 179.29446 * 1 2 3 26 26 H 1.09001 * 109.47033 * 299.29535 * 1 2 3 27 27 H 1.08004 * 119.99929 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.00662 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.99781 * 179.70166 * 6 5 4 30 30 H 1.08010 * 119.99745 * 179.97438 * 7 6 5 31 31 H 1.07999 * 120.00508 * 179.97438 * 8 7 6 32 32 H 1.09002 * 110.60687 * 237.18728 * 9 2 1 33 33 H 1.08998 * 110.60999 * 0.14909 * 9 2 1 34 34 H 1.09004 * 109.47153 * 30.00292 * 13 12 10 35 35 H 1.08998 * 109.46914 * 150.00190 * 13 12 10 36 36 H 0.97003 * 119.99560 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4112 0.0000 4 6 3.4175 1.6402 -0.1109 5 6 3.9027 2.9346 -0.1104 6 6 3.0290 4.0000 0.0016 7 6 1.6704 3.7710 0.1125 8 6 1.1852 2.4767 0.1125 9 6 2.0727 -0.7831 1.2127 10 6 2.8598 -1.9133 0.5771 11 8 3.4598 -2.7765 1.1807 12 7 2.7852 -1.8079 -0.7554 13 6 3.4416 -2.7519 -1.6633 14 6 4.8328 -2.2638 -1.9756 15 1 5.1919 -1.3424 -1.5415 16 6 5.6471 -2.9937 -2.8154 17 7 5.2095 -4.1154 -3.3444 18 14 7.3712 -2.3883 -3.2031 19 1 7.6197 -1.1106 -2.4884 20 1 8.3626 -3.4024 -2.7624 21 1 7.5024 -2.1712 -4.6662 22 6 2.0625 -0.7681 -1.1900 23 8 1.8654 -0.4869 -2.3526 24 1 -0.3633 0.5248 -0.8836 25 1 -0.3633 -1.0276 -0.0127 26 1 -0.3633 0.5029 0.8962 27 1 4.1001 0.8077 -0.1980 28 1 4.9642 3.1135 -0.1966 29 1 3.4085 5.0112 0.0069 30 1 0.9878 4.6035 0.2004 31 1 0.1237 2.2978 0.1995 32 1 2.7253 -0.1520 1.8161 33 1 1.2528 -1.1750 1.8145 34 1 3.4982 -3.7320 -1.1896 35 1 2.8672 -2.8272 -2.5865 36 1 5.7823 -4.6287 -3.9355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048347823.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:11 Heat of formation + Delta-G solvation = -42.315544 kcal Electronic energy + Delta-G solvation = -21145.988901 eV Core-core repulsion = 17981.158577 eV Total energy + Delta-G solvation = -3164.830324 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.64032 -39.05647 -37.82628 -35.46029 -34.69817 -32.70892 -31.03094 -30.09345 -28.55886 -26.99586 -24.75102 -23.24404 -22.49613 -22.17264 -20.36472 -18.79091 -17.41826 -16.79828 -16.20280 -15.77273 -15.55637 -14.86827 -14.75243 -14.64101 -14.07568 -13.87282 -13.71641 -13.34816 -13.34240 -12.83009 -12.50250 -12.28121 -12.16496 -11.86968 -11.63016 -11.53585 -11.13060 -10.94615 -10.84269 -10.79131 -10.40715 -9.99282 -9.76655 -9.35785 -8.89287 -8.66151 -8.60783 -8.53822 -6.16596 -4.21897 1.30304 1.42553 2.09968 3.25916 3.26239 3.33355 3.39424 3.42911 3.77427 4.35833 4.38239 4.48662 4.58288 4.68770 4.95924 5.00529 5.11719 5.14486 5.20179 5.45271 5.50423 5.53299 5.59820 5.69980 5.81527 5.97102 6.01452 6.05335 6.46005 6.50509 6.54243 6.58964 6.85923 6.99438 7.18555 7.75969 7.81132 8.00529 8.03419 8.49205 8.79644 9.43055 10.93107 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.006573 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.702407 B = 4258.526463 C = 5001.927827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.063 4.063 3 C -0.061 4.061 4 C -0.107 4.107 5 C -0.114 4.114 6 C -0.121 4.121 7 C -0.122 4.122 8 C -0.109 4.109 9 C -0.150 4.150 10 C 0.523 3.477 11 O -0.484 6.484 12 N -0.555 5.555 13 C 0.231 3.769 14 C -0.533 4.533 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.890 5.890 18 Si 0.903 3.097 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.281 1.281 22 C 0.536 3.464 23 O -0.473 6.473 24 H 0.073 0.927 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.129 0.871 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.137 13.537 9.337 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.066 4.066 3 C -0.062 4.062 4 C -0.125 4.125 5 C -0.132 4.132 6 C -0.139 4.139 7 C -0.140 4.140 8 C -0.127 4.127 9 C -0.190 4.190 10 C 0.310 3.690 11 O -0.356 6.356 12 N -0.295 5.295 13 C 0.113 3.887 14 C -0.571 4.571 15 H 0.078 0.922 16 C -0.138 4.138 17 N -0.528 5.528 18 Si 0.730 3.270 19 H -0.197 1.197 20 H -0.207 1.207 21 H -0.207 1.207 22 C 0.322 3.678 23 O -0.344 6.344 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.093 0.907 27 H 0.141 0.859 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.140 0.860 31 H 0.146 0.854 32 H 0.133 0.867 33 H 0.135 0.865 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -8.842 13.013 8.860 18.056 hybrid contribution 1.128 0.194 -0.396 1.211 sum -7.714 13.206 8.464 17.480 Atomic orbital electron populations 1.21797 0.90573 1.03232 1.03365 1.20409 0.98434 0.93220 0.94557 1.19239 0.93552 0.92474 1.00924 1.21164 0.94976 0.97744 0.98611 1.21127 0.99979 0.92353 0.99720 1.21158 0.93630 0.98836 1.00297 1.21093 0.95525 0.96604 1.00809 1.21075 0.99688 0.91924 0.99985 1.22790 1.01861 0.96597 0.97756 1.20606 0.79957 0.85811 0.82603 1.90720 1.41201 1.36891 1.66793 1.47010 1.45296 1.27730 1.09483 1.19675 0.92957 0.87642 0.88381 1.21236 0.97897 1.08631 1.29343 0.92248 1.24903 0.98932 0.94682 0.95252 1.69933 1.37070 1.14333 1.31466 0.86356 0.83540 0.78870 0.78209 1.19667 1.20657 1.20672 1.20216 0.77567 0.80392 0.89608 1.90701 1.56648 1.68053 1.18987 0.90762 0.91488 0.90669 0.85862 0.85874 0.86190 0.86047 0.85365 0.86717 0.86506 0.93038 0.93124 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 7.09 37.16 0.26 -1.17 16 2 C -0.06 -0.90 0.90 -155.87 -0.14 -1.04 16 3 C -0.06 -0.86 4.74 -104.62 -0.50 -1.36 16 4 C -0.11 -1.62 8.74 -39.59 -0.35 -1.97 16 5 C -0.11 -1.48 10.05 -39.58 -0.40 -1.88 16 6 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 7 C -0.12 -1.29 10.05 -39.59 -0.40 -1.69 16 8 C -0.11 -1.25 9.05 -39.58 -0.36 -1.61 16 9 C -0.15 -2.03 6.16 -26.76 -0.16 -2.20 16 10 C 0.52 10.26 8.09 -10.90 -0.09 10.17 16 11 O -0.48 -11.08 17.48 5.61 0.10 -10.98 16 12 N -0.55 -12.18 2.54 -116.48 -0.30 -12.47 16 13 C 0.23 6.16 5.31 -5.20 -0.03 6.13 16 14 C -0.53 -15.29 9.39 -34.44 -0.32 -15.61 16 15 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 16 C 0.07 1.88 5.46 -17.82 -0.10 1.78 16 17 N -0.89 -26.46 13.29 55.43 0.74 -25.72 16 18 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C 0.54 10.71 6.09 -11.08 -0.07 10.64 16 23 O -0.47 -11.03 17.48 5.61 0.10 -10.93 16 24 H 0.07 0.83 7.79 -51.93 -0.40 0.42 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.58 7.38 -51.93 -0.38 0.20 16 27 H 0.12 2.12 7.86 -52.48 -0.41 1.71 16 28 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 29 H 0.12 1.03 8.06 -52.48 -0.42 0.60 16 30 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.13 1.16 6.02 -52.49 -0.32 0.84 16 32 H 0.11 1.40 7.49 -51.93 -0.39 1.01 16 33 H 0.12 1.21 7.74 -51.93 -0.40 0.81 16 34 H 0.05 1.45 7.83 -51.93 -0.41 1.05 16 35 H 0.05 1.43 7.83 -51.93 -0.41 1.03 16 36 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 311.16 15.07 4.69 4.69 Total: -1.00 -33.84 311.16 -7.09 -40.93 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -4.36 Total: -0.95 kcal Atomic # 6 Polarization: 1.51 SS G_CDS: -3.04 Total: -1.53 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.44 Total: -38.20 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: 0.20 Total: -21.91 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.84 -7.09 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048347823.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.387 kcal (2) G-P(sol) polarization free energy of solvation -33.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds