Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 110.54294 * 2 1 4 4 C 1.38230 * 120.00146 * 185.31634 * 3 2 1 5 5 C 1.38233 * 120.00352 * 180.02562 * 4 3 2 6 6 C 1.38241 * 119.99546 * 0.02562 * 5 4 3 7 7 C 1.38228 * 119.99953 * 359.97330 * 6 5 4 8 8 C 1.38231 * 120.00631 * 0.05008 * 7 6 5 9 9 C 1.54221 * 110.60585 * 122.85363 * 2 1 3 10 10 C 1.51683 * 103.38596 * 118.70936 * 9 2 1 11 11 O 1.21221 * 125.36351 * 179.97438 * 10 9 2 12 12 N 1.33876 * 109.23631 * 359.87460 * 10 9 2 13 13 C 1.46499 * 122.76140 * 180.02562 * 12 10 9 14 14 C 1.50697 * 109.47317 * 270.00539 * 13 12 10 15 15 H 1.08000 * 120.00107 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00054 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99800 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00000 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47428 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47099 * 120.00229 * 18 16 14 21 21 H 1.48497 * 109.47418 * 239.99987 * 18 16 14 22 22 C 1.33883 * 114.47882 * 0.08547 * 12 10 9 23 23 O 1.21219 * 125.39869 * 180.02562 * 22 12 10 24 24 H 1.09004 * 109.47013 * 59.28969 * 1 2 3 25 25 H 1.08997 * 109.47037 * 179.29446 * 1 2 3 26 26 H 1.09001 * 109.47033 * 299.29535 * 1 2 3 27 27 H 1.08004 * 119.99929 * 0.02562 * 4 3 2 28 28 H 1.07996 * 120.00662 * 179.97438 * 5 4 3 29 29 H 1.08004 * 119.99781 * 179.70166 * 6 5 4 30 30 H 1.08010 * 119.99745 * 179.97438 * 7 6 5 31 31 H 1.07999 * 120.00508 * 179.97438 * 8 7 6 32 32 H 1.09002 * 110.60687 * 237.18728 * 9 2 1 33 33 H 1.08998 * 110.60999 * 0.14909 * 9 2 1 34 34 H 1.09004 * 109.47153 * 30.00292 * 13 12 10 35 35 H 1.08998 * 109.46914 * 150.00190 * 13 12 10 36 36 H 0.97003 * 119.99560 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4112 0.0000 4 6 3.4175 1.6402 -0.1109 5 6 3.9027 2.9346 -0.1104 6 6 3.0290 4.0000 0.0016 7 6 1.6704 3.7710 0.1125 8 6 1.1852 2.4767 0.1125 9 6 2.0727 -0.7831 1.2127 10 6 2.8598 -1.9133 0.5771 11 8 3.4598 -2.7765 1.1807 12 7 2.7852 -1.8079 -0.7554 13 6 3.4416 -2.7519 -1.6633 14 6 4.8328 -2.2638 -1.9756 15 1 5.1919 -1.3424 -1.5415 16 6 5.6471 -2.9937 -2.8154 17 7 5.2095 -4.1154 -3.3444 18 14 7.3712 -2.3883 -3.2031 19 1 7.6197 -1.1106 -2.4884 20 1 8.3626 -3.4024 -2.7624 21 1 7.5024 -2.1712 -4.6662 22 6 2.0625 -0.7681 -1.1900 23 8 1.8654 -0.4869 -2.3526 24 1 -0.3633 0.5248 -0.8836 25 1 -0.3633 -1.0276 -0.0127 26 1 -0.3633 0.5029 0.8962 27 1 4.1001 0.8077 -0.1980 28 1 4.9642 3.1135 -0.1966 29 1 3.4085 5.0112 0.0069 30 1 0.9878 4.6035 0.2004 31 1 0.1237 2.2978 0.1995 32 1 2.7253 -0.1520 1.8161 33 1 1.2528 -1.1750 1.8145 34 1 3.4982 -3.7320 -1.1896 35 1 2.8672 -2.8272 -2.5865 36 1 5.7823 -4.6287 -3.9355 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048347823.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = -64.156477 kcal Electronic energy + Delta-G solvation = -21146.935995 eV Core-core repulsion = 17981.158577 eV Total energy + Delta-G solvation = -3165.777418 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.12301 -40.17421 -39.44216 -36.98322 -36.31757 -34.74058 -31.99591 -31.33648 -29.88879 -28.62758 -26.16193 -25.11459 -23.74854 -23.18952 -21.67877 -20.28341 -19.07932 -18.46077 -17.85716 -17.26693 -16.99792 -16.59750 -15.88267 -15.80623 -15.74841 -15.25034 -14.92768 -14.80585 -14.48273 -14.28006 -13.94047 -13.73771 -13.35636 -13.30053 -13.18428 -12.77394 -12.73684 -12.62351 -12.42222 -12.00646 -11.93048 -11.78228 -11.39590 -10.96397 -10.76917 -10.56864 -9.81848 -9.66231 -8.40038 -6.55168 0.33052 0.48458 0.54894 1.29239 1.31376 1.43266 1.72264 1.88717 2.28976 2.76409 2.92313 3.14535 3.24183 3.44767 3.59309 3.87107 4.11911 4.16605 4.31595 4.53094 4.58241 4.59009 4.61734 4.70234 4.76233 4.81755 4.90019 4.92449 5.05723 5.15100 5.21778 5.49162 5.57808 5.62351 5.62871 5.77750 6.07191 6.10719 6.45902 6.48089 6.84706 7.15919 8.70532 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.018469 B = 0.006573 C = 0.005596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.702407 B = 4258.526463 C = 5001.927827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.045 4.045 3 C -0.079 4.079 4 C -0.138 4.138 5 C -0.129 4.129 6 C -0.117 4.117 7 C -0.116 4.116 8 C -0.102 4.102 9 C -0.128 4.128 10 C 0.514 3.486 11 O -0.526 6.526 12 N -0.570 5.570 13 C 0.244 3.756 14 C -0.555 4.555 15 H 0.052 0.948 16 C 0.013 3.987 17 N -0.922 5.922 18 Si 0.973 3.027 19 H -0.267 1.267 20 H -0.268 1.268 21 H -0.270 1.270 22 C 0.527 3.473 23 O -0.518 6.518 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.122 0.878 27 H 0.085 0.915 28 H 0.127 0.873 29 H 0.149 0.851 30 H 0.159 0.841 31 H 0.161 0.839 32 H 0.135 0.865 33 H 0.164 0.836 34 H 0.024 0.976 35 H 0.022 0.978 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.515 16.733 10.972 22.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.048 4.048 3 C -0.080 4.080 4 C -0.157 4.157 5 C -0.147 4.147 6 C -0.135 4.135 7 C -0.134 4.134 8 C -0.120 4.120 9 C -0.167 4.167 10 C 0.305 3.695 11 O -0.401 6.401 12 N -0.310 5.310 13 C 0.124 3.876 14 C -0.593 4.593 15 H 0.070 0.930 16 C -0.188 4.188 17 N -0.560 5.560 18 Si 0.796 3.204 19 H -0.192 1.192 20 H -0.193 1.193 21 H -0.195 1.195 22 C 0.317 3.683 23 O -0.392 6.392 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.140 0.860 27 H 0.104 0.896 28 H 0.145 0.855 29 H 0.167 0.833 30 H 0.177 0.823 31 H 0.179 0.821 32 H 0.153 0.847 33 H 0.182 0.818 34 H 0.042 0.958 35 H 0.040 0.960 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.246 16.230 10.523 21.889 hybrid contribution 1.544 -0.770 -0.937 1.963 sum -8.703 15.460 9.586 20.166 Atomic orbital electron populations 1.21942 0.87087 1.04257 1.05604 1.20448 1.00802 0.92696 0.90900 1.19272 0.93298 0.92759 1.02626 1.21075 0.95514 0.97677 1.01416 1.21290 1.00883 0.92227 1.00320 1.21535 0.93916 0.99421 0.98646 1.21581 0.95763 0.97374 0.98678 1.21441 1.00805 0.91387 0.98349 1.22908 1.02408 0.93762 0.97586 1.21725 0.79469 0.86610 0.81682 1.90683 1.43175 1.39031 1.67236 1.47138 1.45749 1.27901 1.10214 1.19067 0.92520 0.87923 0.88052 1.21482 0.99100 1.08661 1.30034 0.92983 1.25888 1.03427 0.94717 0.94742 1.70039 1.38837 1.15333 1.31807 0.85290 0.78054 0.78634 0.78444 1.19169 1.19317 1.19473 1.21366 0.76278 0.79747 0.90883 1.90652 1.58181 1.68967 1.21388 0.90905 0.91200 0.85992 0.89637 0.85543 0.83337 0.82307 0.82136 0.84745 0.81836 0.95760 0.96019 0.91860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.35 7.09 71.98 0.51 -1.84 16 2 C -0.05 -1.22 0.90 -53.06 -0.05 -1.27 16 3 C -0.08 -2.06 4.74 -19.86 -0.09 -2.15 16 4 C -0.14 -4.23 8.74 22.27 0.19 -4.04 16 5 C -0.13 -3.24 10.05 22.27 0.22 -3.02 16 6 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 7 C -0.12 -1.88 10.05 22.27 0.22 -1.66 16 8 C -0.10 -1.90 9.05 22.27 0.20 -1.70 16 9 C -0.13 -3.21 6.16 30.58 0.19 -3.02 16 10 C 0.51 20.80 8.09 88.11 0.71 21.52 16 11 O -0.53 -25.17 17.48 -2.85 -0.05 -25.22 16 12 N -0.57 -26.50 2.54 -760.26 -1.93 -28.43 16 13 C 0.24 14.07 5.31 85.63 0.45 14.53 16 14 C -0.55 -33.76 9.39 25.60 0.24 -33.52 16 15 H 0.05 3.15 7.81 -2.91 -0.02 3.13 16 16 C 0.01 0.75 5.46 84.66 0.46 1.21 16 17 N -0.92 -56.99 13.29 21.45 0.28 -56.71 16 18 Si 0.97 46.24 29.54 68.60 2.03 48.27 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 21 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 22 C 0.53 21.85 6.09 87.99 0.54 22.38 16 23 O -0.52 -25.40 17.48 -2.84 -0.05 -25.45 16 24 H 0.07 1.37 7.79 -2.38 -0.02 1.35 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.12 1.10 7.38 -2.39 -0.02 1.08 16 27 H 0.09 3.17 7.86 -2.91 -0.02 3.15 16 28 H 0.13 2.91 8.06 -2.91 -0.02 2.88 16 29 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 30 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 31 H 0.16 1.90 6.02 -2.91 -0.02 1.88 16 32 H 0.13 2.97 7.49 -2.39 -0.02 2.95 16 33 H 0.16 2.65 7.74 -2.39 -0.02 2.63 16 34 H 0.02 1.50 7.83 -2.38 -0.02 1.48 16 35 H 0.02 1.35 7.83 -2.39 -0.02 1.33 16 36 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -81.04 311.16 5.40 -75.64 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.09 Total: 6.46 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 4.03 Total: 5.44 kcal Atomic # 7 Polarization: -83.49 SS G_CDS: -1.64 Total: -85.14 kcal Atomic # 8 Polarization: -50.56 SS G_CDS: -0.10 Total: -50.66 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -81.04 5.40 -75.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048347823.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.480 kcal (2) G-P(sol) polarization free energy of solvation -81.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds