Wall clock time and date at job start Mon Mar 30 2020 01:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.33412 * 120.00254 * 2 1 4 4 C 1.46336 * 120.00251 * 179.97438 * 3 2 1 5 5 C 1.35198 * 120.00224 * 179.72539 * 4 3 2 6 6 C 1.46212 * 120.00279 * 180.02562 * 5 4 3 7 7 O 1.21732 * 119.99949 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00527 * 180.02562 * 6 5 4 9 9 C 1.39802 * 120.00703 * 174.78354 * 8 6 5 10 10 C 1.38993 * 120.03659 * 326.13034 * 9 8 6 11 11 C 1.38157 * 120.06455 * 179.69785 * 10 9 8 12 12 C 1.38171 * 120.13934 * 0.59322 * 11 10 9 13 13 C 1.38922 * 120.07675 * 359.68168 * 12 11 10 14 14 O 1.35752 * 120.02761 * 179.97438 * 13 12 11 15 15 C 1.34837 * 116.99446 * 185.92491 * 14 13 12 16 16 H 1.07998 * 119.99908 * 5.40366 * 15 14 13 17 17 C 1.38656 * 119.99653 * 185.40651 * 15 14 13 18 18 N 1.31551 * 120.00092 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 119.99739 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46985 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46728 * 119.99911 * 19 17 15 22 22 H 1.48492 * 109.47278 * 239.99996 * 19 17 15 23 23 C 1.38749 * 120.04376 * 146.40152 * 9 8 6 24 24 H 1.08996 * 109.46996 * 59.99585 * 1 2 3 25 25 H 1.08999 * 109.46836 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46935 * 300.00014 * 1 2 3 27 27 H 1.08006 * 119.99877 * 180.02562 * 2 1 3 28 28 H 1.08006 * 119.99869 * 0.02562 * 3 2 1 29 29 H 1.08000 * 119.99461 * 0.02562 * 4 3 2 30 30 H 1.07997 * 119.99670 * 359.97438 * 5 4 3 31 31 H 0.97006 * 119.99372 * 354.78241 * 8 6 5 32 32 H 1.08000 * 119.97358 * 359.97148 * 10 9 8 33 33 H 1.07997 * 119.92919 * 180.27611 * 11 10 9 34 34 H 1.07997 * 119.96668 * 179.70196 * 12 11 10 35 35 H 0.97002 * 120.00202 * 179.97438 * 18 17 15 36 36 H 1.08005 * 120.06573 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1742 1.1553 0.0000 4 6 3.6375 1.1553 0.0006 5 6 4.3135 2.3262 -0.0050 6 6 5.7757 2.3262 -0.0050 7 8 6.3843 1.2719 0.0005 8 7 6.4496 3.4932 -0.0101 9 6 7.8433 3.4963 0.0999 10 6 8.4823 2.5333 0.8721 11 6 9.8600 2.5320 0.9763 12 6 10.6060 3.4946 0.3235 13 6 9.9730 4.4632 -0.4452 14 8 10.7068 5.4088 -1.0857 15 6 10.0273 6.3901 -1.7129 16 1 8.9531 6.4487 -1.6182 17 6 10.7077 7.3237 -2.4796 18 7 12.0161 7.2519 -2.5954 19 14 9.7662 8.6828 -3.3492 20 1 8.3161 8.5426 -3.0614 21 1 10.2414 10.0031 -2.8634 22 1 9.9927 8.5832 -4.8134 23 6 8.5899 4.4639 -0.5570 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.0471 -0.9354 -0.0004 28 1 1.6341 2.0907 0.0004 29 1 4.1774 0.2200 0.0006 30 1 3.7735 3.2614 -0.0104 31 1 5.9676 4.3312 -0.0902 32 1 7.9017 1.7827 1.3877 33 1 10.3545 1.7801 1.5733 34 1 11.6824 3.4938 0.4108 35 1 12.4921 7.9049 -3.1321 36 1 8.0955 5.2156 -1.1544 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048825021.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:14 Heat of formation + Delta-G solvation = -29.202823 kcal Electronic energy + Delta-G solvation = -19128.558627 eV Core-core repulsion = 15964.296913 eV Total energy + Delta-G solvation = -3164.261714 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.55422 -40.33881 -38.20693 -36.73382 -35.65177 -34.24328 -33.29308 -31.06160 -30.31914 -28.18678 -27.27694 -24.64263 -23.52225 -22.41320 -20.95778 -20.56887 -19.75292 -19.22251 -18.16934 -17.25191 -16.85149 -16.39388 -16.02573 -15.84125 -15.58816 -15.47176 -15.35717 -14.59327 -14.30131 -14.20036 -14.11231 -13.58631 -13.25502 -13.13257 -12.82192 -12.64872 -12.62646 -12.47284 -12.16498 -12.08539 -11.78508 -11.47947 -11.31607 -10.95977 -10.73484 -9.44381 -9.25639 -8.86583 -8.46776 -6.15597 -0.29508 0.47326 0.68610 1.36177 1.44607 1.54642 1.59840 2.09527 2.18227 2.39368 2.84124 3.16422 3.47773 3.65589 4.00774 4.08090 4.20512 4.30785 4.32056 4.43442 4.53961 4.61759 4.72258 4.77463 4.85442 4.97485 5.01102 5.10839 5.21273 5.35418 5.41367 5.51645 5.64524 5.65497 5.65791 5.81195 6.01248 6.15891 6.48041 6.97507 7.11572 7.76746 8.76495 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021544 B = 0.003369 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.358720 B = 8309.464336 C = 9497.112428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.105 4.105 3 C -0.172 4.172 4 C -0.016 4.016 5 C -0.225 4.225 6 C 0.540 3.460 7 O -0.570 6.570 8 N -0.658 5.658 9 C 0.186 3.814 10 C -0.201 4.201 11 C -0.051 4.051 12 C -0.214 4.214 13 C 0.134 3.866 14 O -0.226 6.226 15 C -0.413 4.413 16 H 0.103 0.897 17 C -0.023 4.023 18 N -0.920 5.920 19 Si 1.020 2.980 20 H -0.248 1.248 21 H -0.268 1.268 22 H -0.271 1.271 23 C -0.261 4.261 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.117 0.883 28 H 0.137 0.863 29 H 0.115 0.885 30 H 0.162 0.838 31 H 0.424 0.576 32 H 0.129 0.871 33 H 0.155 0.845 34 H 0.121 0.879 35 H 0.273 0.727 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.116 -9.100 5.622 25.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.124 4.124 3 C -0.190 4.190 4 C -0.035 4.035 5 C -0.245 4.245 6 C 0.333 3.667 7 O -0.451 6.451 8 N -0.303 5.303 9 C 0.091 3.909 10 C -0.222 4.222 11 C -0.070 4.070 12 C -0.233 4.233 13 C 0.083 3.917 14 O -0.132 6.132 15 C -0.489 4.489 16 H 0.120 0.880 17 C -0.221 4.221 18 N -0.558 5.558 19 Si 0.839 3.161 20 H -0.171 1.171 21 H -0.193 1.193 22 H -0.196 1.196 23 C -0.282 4.282 24 H 0.097 0.903 25 H 0.093 0.907 26 H 0.098 0.902 27 H 0.135 0.865 28 H 0.155 0.845 29 H 0.133 0.867 30 H 0.179 0.821 31 H 0.262 0.738 32 H 0.146 0.854 33 H 0.173 0.827 34 H 0.139 0.861 35 H 0.082 0.918 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.356 -9.694 5.519 24.984 hybrid contribution 0.183 1.047 -0.584 1.213 sum -22.173 -8.646 4.935 24.306 Atomic orbital electron populations 1.21000 0.90966 1.03787 1.03166 1.24071 0.97715 0.97775 0.92799 1.21858 0.91332 0.99983 1.05851 1.22687 0.94636 0.97728 0.88492 1.22827 0.90028 1.01252 1.10439 1.19103 0.89827 0.82641 0.75120 1.90803 1.71356 1.32246 1.50713 1.43370 1.04454 1.10536 1.71918 1.17472 0.83138 0.95630 0.94661 1.20863 0.94938 1.02064 1.04316 1.20925 0.92957 0.96391 0.96704 1.20489 1.00355 0.98287 1.04216 1.19612 0.90737 0.89470 0.91913 1.83990 1.35259 1.33020 1.60926 1.21851 0.93269 1.04552 1.29202 0.87956 1.26617 0.96952 1.01200 0.97323 1.70191 1.08746 1.37168 1.39673 0.84513 0.78364 0.75832 0.77390 1.17120 1.19341 1.19600 1.20857 0.93341 1.05398 1.08624 0.90312 0.90725 0.90205 0.86504 0.84547 0.86676 0.82089 0.73758 0.85364 0.82748 0.86122 0.91820 0.85237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 10.19 71.24 0.73 -0.13 16 2 C -0.11 -1.11 9.98 24.59 0.25 -0.87 16 3 C -0.17 -2.21 9.48 23.28 0.22 -1.98 16 4 C -0.02 -0.29 9.38 23.68 0.22 -0.07 16 5 C -0.23 -4.53 9.71 23.64 0.23 -4.30 16 6 C 0.54 16.06 7.47 86.32 0.64 16.70 16 7 O -0.57 -21.36 13.94 -4.45 -0.06 -21.42 16 8 N -0.66 -19.82 5.33 -307.54 -1.64 -21.46 16 9 C 0.19 7.20 6.26 38.17 0.24 7.44 16 10 C -0.20 -7.70 8.65 22.43 0.19 -7.51 16 11 C -0.05 -1.92 10.03 22.23 0.22 -1.70 16 12 C -0.21 -9.49 9.99 22.42 0.22 -9.27 16 13 C 0.13 6.83 6.64 22.56 0.15 6.98 16 14 O -0.23 -13.62 9.76 -22.83 -0.22 -13.85 16 15 C -0.41 -23.83 9.44 67.92 0.64 -23.19 16 16 H 0.10 5.37 5.30 -2.91 -0.02 5.35 16 17 C -0.02 -1.32 5.49 84.83 0.47 -0.85 16 18 N -0.92 -56.36 13.67 21.61 0.30 -56.06 16 19 Si 1.02 42.26 29.55 68.60 2.03 44.29 16 20 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 21 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 22 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 23 C -0.26 -11.66 9.04 22.52 0.20 -11.46 16 24 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 25 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.12 1.18 8.05 -2.91 -0.02 1.16 16 28 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 29 H 0.12 2.45 7.52 -2.91 -0.02 2.43 16 30 H 0.16 2.11 8.06 -2.91 -0.02 2.08 16 31 H 0.42 9.70 8.80 -92.70 -0.82 8.88 16 32 H 0.13 4.73 6.45 -2.91 -0.02 4.71 16 33 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 34 H 0.12 5.18 8.06 -2.91 -0.02 5.15 16 35 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.13 5.68 5.71 -2.91 -0.02 5.66 16 Total: -1.00 -75.89 322.13 5.31 -70.58 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: 0.29 Total: 28.14 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: 4.63 Total: -30.20 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -1.34 Total: -77.53 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.28 Total: -35.27 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -75.89 5.31 -70.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048825021.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.372 kcal (2) G-P(sol) polarization free energy of solvation -75.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds