Wall clock time and date at job start Mon Mar 30 2020 01:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00387 * 2 1 4 4 H 1.48500 * 109.47475 * 270.00100 * 3 2 1 5 5 H 1.48511 * 109.47015 * 29.99761 * 3 2 1 6 6 H 1.48497 * 109.47740 * 149.99688 * 3 2 1 7 7 C 1.38801 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99978 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00380 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00408 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47278 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00161 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99963 * 179.97438 * 11 10 9 14 14 C 1.47426 * 125.64852 * 4.95668 * 13 11 10 15 15 C 1.54906 * 104.83091 * 204.09105 * 14 13 11 16 16 C 1.55153 * 101.58396 * 322.98743 * 15 14 13 17 17 C 1.47020 * 125.65043 * 184.91038 * 13 11 10 18 18 H 1.09002 * 110.00943 * 59.48475 * 17 13 11 19 19 C 1.53003 * 109.88000 * 298.39738 * 17 13 11 20 20 C 1.52999 * 109.47066 * 176.72488 * 19 17 13 21 21 C 1.53006 * 109.47373 * 185.01098 * 20 19 17 22 22 O 1.42900 * 109.47053 * 179.97438 * 21 20 19 23 23 H 0.96994 * 119.99597 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.47291 * 59.99656 * 10 9 7 25 25 H 1.09008 * 109.46751 * 299.99763 * 10 9 7 26 26 H 1.08994 * 110.36835 * 85.25125 * 14 13 11 27 27 H 1.09002 * 110.36200 * 322.92835 * 14 13 11 28 28 H 1.09001 * 111.00862 * 81.06385 * 15 14 13 29 29 H 1.09001 * 111.00509 * 204.87808 * 15 14 13 30 30 H 1.08997 * 110.72259 * 153.86680 * 16 15 14 31 31 H 1.09004 * 110.72062 * 277.14491 * 16 15 14 32 32 H 1.09004 * 109.47319 * 296.72099 * 19 17 13 33 33 H 1.08998 * 109.47613 * 56.72364 * 19 17 13 34 34 H 1.09000 * 109.47417 * 305.01095 * 20 19 17 35 35 H 1.08998 * 109.47635 * 65.00747 * 20 19 17 36 36 H 1.08997 * 109.46696 * 299.99829 * 21 20 19 37 37 H 1.09005 * 109.46731 * 59.99852 * 21 20 19 38 38 H 0.96706 * 113.99613 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0009 11 6 5.5730 -3.2326 0.0021 12 8 6.3440 -2.2964 0.0025 13 7 6.0457 -4.4948 0.0026 14 6 5.2293 -5.7180 -0.1013 15 6 6.0927 -6.8273 0.5494 16 6 7.5183 -6.4219 0.0908 17 6 7.4608 -4.8798 0.1060 18 1 7.8830 -4.5022 1.0373 19 6 8.2411 -4.3182 -1.0842 20 6 9.7252 -4.6545 -0.9255 21 6 10.5223 -3.9875 -2.0484 22 8 11.9085 -4.3012 -1.8997 23 1 -0.4849 0.8400 -0.0004 24 1 3.6440 -3.4315 -0.8893 25 1 3.6433 -3.4318 0.8908 26 1 5.0323 -5.9549 -1.1468 27 1 4.2933 -5.5968 0.4440 28 1 6.0094 -6.8005 1.6359 29 1 5.8221 -7.8101 0.1632 30 1 8.2678 -6.7868 0.7931 31 1 7.7192 -6.7904 -0.9152 32 1 7.8650 -4.7606 -2.0067 33 1 8.1159 -3.2361 -1.1229 34 1 10.0796 -4.2888 0.0383 35 1 9.8605 -5.7348 -0.9761 36 1 10.1679 -4.3532 -3.0121 37 1 10.3871 -2.9071 -1.9976 38 1 12.4751 -3.9108 -2.5792 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052759828.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:17 Heat of formation + Delta-G solvation = -126.087712 kcal Electronic energy + Delta-G solvation = -18872.457596 eV Core-core repulsion = 15839.438590 eV Total energy + Delta-G solvation = -3033.019007 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.26539 -38.73140 -37.90334 -34.86458 -34.69462 -32.82090 -30.85569 -29.58680 -27.87289 -26.20031 -23.96459 -22.74244 -21.67087 -20.43288 -19.50645 -18.30614 -18.20834 -17.25627 -17.07405 -16.65145 -16.43728 -15.91142 -15.63201 -15.07485 -14.91423 -14.64296 -14.30475 -14.05036 -13.78960 -13.67400 -13.35072 -13.18595 -13.02063 -12.78662 -12.53628 -12.38269 -12.08487 -12.00834 -11.87953 -11.58210 -11.52268 -11.19025 -10.93129 -10.86573 -10.56275 -9.71077 -9.02985 -8.53602 -6.24949 0.94643 1.29647 1.44005 1.51064 1.52124 2.05451 2.23452 2.66218 2.84620 3.26332 3.47065 3.64451 3.86158 3.93430 4.04843 4.11973 4.20732 4.28265 4.38116 4.38509 4.46697 4.48415 4.67126 4.73550 4.82826 4.86574 4.98800 5.03448 5.12938 5.24556 5.26576 5.37855 5.50271 5.68874 6.09118 6.39136 6.85176 6.91484 7.07383 8.58969 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023304 B = 0.004169 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.205372 B = 6715.100322 C = 7752.985397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.257 1.257 6 H -0.238 1.238 7 C -0.529 4.529 8 H 0.062 0.938 9 S -0.174 6.174 10 C -0.103 4.103 11 C 0.546 3.454 12 O -0.559 6.559 13 N -0.614 5.614 14 C 0.085 3.915 15 C -0.123 4.123 16 C -0.117 4.117 17 C 0.133 3.867 18 H 0.061 0.939 19 C -0.122 4.122 20 C -0.107 4.107 21 C 0.074 3.926 22 O -0.593 6.593 23 H 0.278 0.722 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.037 0.963 38 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.385 -16.520 -2.685 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.182 1.182 6 H -0.162 1.162 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.052 5.948 10 C -0.254 4.254 11 C 0.334 3.666 12 O -0.438 6.438 13 N -0.348 5.348 14 C -0.037 4.037 15 C -0.161 4.161 16 C -0.155 4.155 17 C 0.030 3.970 18 H 0.079 0.921 19 C -0.161 4.161 20 C -0.145 4.145 21 C -0.004 4.004 22 O -0.401 6.401 23 H 0.087 0.913 24 H 0.126 0.874 25 H 0.126 0.874 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 19.077 -15.311 -2.164 24.557 hybrid contribution -1.160 0.392 -0.501 1.323 sum 17.917 -14.918 -2.666 23.466 Atomic orbital electron populations 1.70010 1.07276 1.29079 1.49071 1.25550 0.95271 1.02217 0.92826 0.85874 0.80639 0.79620 0.80275 1.18596 1.18160 1.16230 1.22441 0.90117 0.96720 1.58388 0.91991 1.84691 1.06585 1.05940 1.97561 1.23220 0.95752 0.99562 1.06831 1.19637 0.89333 0.82000 0.75669 1.90664 1.59224 1.43072 1.50794 1.48556 1.08953 1.04888 1.72393 1.22701 0.95358 0.83359 1.02272 1.22792 0.93595 0.98453 1.01245 1.22754 0.98354 0.90362 1.04011 1.21756 0.80239 0.97106 0.97904 0.92102 1.21775 0.94709 1.01134 0.98454 1.21369 0.92563 1.02090 0.98494 1.22187 0.81288 0.98250 0.98664 1.86401 1.18577 1.77860 1.57292 0.91292 0.87364 0.87385 0.89853 0.90232 0.90431 0.86927 0.88243 0.88857 0.90905 0.93479 0.92312 0.89471 0.92362 0.94419 0.75323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.07 13.97 21.65 0.30 -55.77 16 2 C 0.05 2.77 5.50 84.86 0.47 3.24 16 3 Si 0.91 45.37 27.74 68.60 1.90 47.27 16 4 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 5 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.24 -11.87 6.74 99.48 0.67 -11.20 16 7 C -0.53 -31.17 10.04 67.95 0.68 -30.48 16 8 H 0.06 3.84 8.03 -2.91 -0.02 3.82 16 9 S -0.17 -9.01 18.55 -56.49 -1.05 -10.06 16 10 C -0.10 -4.07 5.09 71.23 0.36 -3.71 16 11 C 0.55 20.07 7.68 87.66 0.67 20.75 16 12 O -0.56 -24.82 14.67 -3.02 -0.04 -24.86 16 13 N -0.61 -16.27 3.07 -788.07 -2.42 -18.68 16 14 C 0.08 1.54 6.74 86.85 0.59 2.12 16 15 C -0.12 -1.43 7.08 31.98 0.23 -1.20 16 16 C -0.12 -1.46 5.61 31.78 0.18 -1.28 16 17 C 0.13 2.88 2.95 45.34 0.13 3.02 16 18 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 19 C -0.12 -2.73 4.66 30.59 0.14 -2.58 16 20 C -0.11 -1.99 5.33 30.60 0.16 -1.83 16 21 C 0.07 1.33 7.05 71.98 0.51 1.84 16 22 O -0.59 -10.54 13.66 -148.98 -2.04 -12.57 16 23 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 24 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 25 H 0.11 3.99 7.95 -2.39 -0.02 3.98 16 26 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.47 7.47 -2.39 -0.02 1.45 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 29 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.09 0.94 7.79 -2.39 -0.02 0.92 16 32 H 0.07 1.47 8.06 -2.38 -0.02 1.46 16 33 H 0.05 1.43 6.60 -2.39 -0.02 1.41 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.31 7.58 -2.39 -0.02 1.29 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 38 H 0.40 3.40 9.12 -74.05 -0.68 2.73 16 Total: -1.00 -76.20 324.53 1.12 -75.09 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.33 Total: 9.71 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 4.12 Total: -10.12 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -2.11 Total: -74.45 kcal Atomic # 8 Polarization: -35.35 SS G_CDS: -2.08 Total: -37.43 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.90 Total: 47.27 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -76.20 1.12 -75.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052759828.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.002 kcal (2) G-P(sol) polarization free energy of solvation -76.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds