Wall clock time and date at job start Mon Mar 30 2020 01:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35406 * 125.11905 * 2 1 4 4 H 0.97008 * 124.77387 * 359.97438 * 3 2 1 5 5 C 1.37974 * 110.45033 * 180.02562 * 3 2 1 6 6 C 1.39122 * 133.18069 * 180.02562 * 5 3 2 7 7 C 1.37769 * 119.92955 * 179.97438 * 6 5 3 8 8 C 1.38748 * 120.63315 * 0.02877 * 7 6 5 9 9 C 1.37760 * 120.29977 * 359.96256 * 8 7 6 10 10 C 1.39265 * 119.67025 * 0.02562 * 9 8 7 11 11 C 1.36466 * 125.11863 * 179.69043 * 2 1 3 12 12 C 1.46743 * 126.77952 * 359.97438 * 11 2 1 13 13 O 1.21595 * 119.99932 * 90.02093 * 12 11 2 14 14 O 1.34837 * 119.99722 * 270.01786 * 12 11 2 15 15 C 1.45202 * 116.99745 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47063 * 180.02562 * 15 14 12 17 17 C 1.50705 * 109.47247 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99797 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99842 * 179.97438 * 17 16 15 20 20 N 1.31507 * 120.00237 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99608 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47294 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47241 * 119.99790 * 21 19 17 24 24 H 1.48501 * 109.46679 * 239.99788 * 21 19 17 25 25 H 1.09002 * 109.47152 * 90.02723 * 1 2 3 26 26 H 1.09001 * 109.46980 * 330.02823 * 1 2 3 27 27 H 1.09004 * 109.47113 * 210.02804 * 1 2 3 28 28 H 1.08002 * 120.02942 * 359.96684 * 6 5 3 29 29 H 1.08004 * 119.68121 * 179.97438 * 7 6 5 30 30 H 1.07998 * 119.84685 * 179.97438 * 8 7 6 31 31 H 1.08000 * 120.16651 * 180.02562 * 9 8 7 32 32 H 1.08998 * 109.47186 * 300.00181 * 15 14 12 33 33 H 1.08995 * 109.47402 * 59.99964 * 15 14 12 34 34 H 1.09001 * 109.46769 * 299.99288 * 16 15 14 35 35 H 1.08995 * 109.47549 * 59.99432 * 16 15 14 36 36 H 0.97002 * 120.00111 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2860 1.1076 0.0000 4 1 1.9525 2.0185 -0.0004 5 6 3.6208 0.7582 -0.0006 6 6 4.7986 1.4985 -0.0004 7 6 6.0160 0.8534 -0.0006 8 6 6.0817 -0.5325 -0.0016 9 6 4.9265 -1.2831 -0.0017 10 6 3.6891 -0.6440 -0.0012 11 6 2.2921 -1.1162 0.0060 12 6 1.8361 -2.5110 0.0141 13 8 1.6472 -3.0949 -1.0356 14 8 1.6268 -3.1450 1.1855 15 6 1.1768 -4.5239 1.1175 16 6 0.9945 -5.0714 2.5346 17 6 0.5280 -6.5027 2.4640 18 1 0.3764 -6.9745 1.5045 19 6 0.2950 -7.2097 3.6245 20 7 0.4801 -6.6353 4.7929 21 14 -0.2825 -8.9841 3.5370 22 1 -0.4127 -9.3928 2.1152 23 1 0.7056 -9.8603 4.2158 24 1 -1.6002 -9.1095 4.2103 25 1 -0.3633 -0.0005 -1.0277 26 1 -0.3633 0.8903 0.5134 27 1 -0.3633 -0.8898 0.5143 28 1 4.7587 2.5778 -0.0002 29 1 6.9279 1.4321 -0.0008 30 1 7.0428 -1.0250 -0.0022 31 1 4.9801 -2.3617 -0.0020 32 1 0.2266 -4.5702 0.5855 33 1 1.9186 -5.1226 0.5890 34 1 1.9445 -5.0251 3.0669 35 1 0.2525 -4.4726 3.0628 36 1 0.3158 -7.1327 5.6093 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053922136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:44 Heat of formation + Delta-G solvation = -64.246888 kcal Electronic energy + Delta-G solvation = -19826.064269 eV Core-core repulsion = 16660.282930 eV Total energy + Delta-G solvation = -3165.781339 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.58755 -41.05976 -38.13417 -37.60491 -35.45500 -33.46065 -32.29009 -32.10694 -30.51437 -28.21732 -27.10684 -24.79091 -23.33756 -22.86732 -22.34141 -20.90357 -19.05455 -18.67420 -18.01696 -17.85779 -17.11248 -16.84384 -16.45056 -16.05266 -15.90891 -15.14340 -14.91398 -14.71143 -14.43562 -14.34234 -13.94882 -13.72081 -13.33995 -13.13704 -13.04258 -12.63649 -12.62198 -12.50136 -12.46201 -12.13579 -11.87937 -11.56565 -11.51024 -11.37559 -10.77089 -10.62927 -9.25682 -8.80851 -8.27566 -6.41358 -0.00038 0.55936 0.98315 1.15613 1.41139 1.41915 1.55822 1.76756 2.12597 2.41341 2.87415 3.06569 3.49099 3.73325 3.80510 4.13533 4.18681 4.21039 4.26131 4.27924 4.35812 4.50557 4.57210 4.59764 4.67293 4.87574 4.97102 5.06262 5.21424 5.39295 5.43398 5.46886 5.51663 5.57675 5.63918 5.71802 6.04881 6.07894 6.51823 6.66851 6.72874 7.28526 8.85446 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025899 B = 0.003696 C = 0.003470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.842876 B = 7573.109980 C = 8067.461403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.165 3.835 3 N -0.557 5.557 4 H 0.441 0.559 5 C 0.083 3.917 6 C -0.113 4.113 7 C -0.101 4.101 8 C -0.131 4.131 9 C -0.114 4.114 10 C -0.099 4.099 11 C -0.265 4.265 12 C 0.546 3.454 13 O -0.537 6.537 14 O -0.360 6.360 15 C 0.087 3.913 16 C 0.032 3.968 17 C -0.550 4.550 18 H 0.066 0.934 19 C 0.006 3.994 20 N -0.927 5.927 21 Si 0.976 3.024 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.273 1.273 25 H 0.103 0.897 26 H 0.116 0.884 27 H 0.070 0.930 28 H 0.162 0.838 29 H 0.166 0.834 30 H 0.146 0.854 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.003 0.997 35 H 0.008 0.992 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.395 21.390 -9.793 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.050 3.950 3 N -0.161 5.161 4 H 0.283 0.717 5 C -0.023 4.023 6 C -0.133 4.133 7 C -0.120 4.120 8 C -0.149 4.149 9 C -0.132 4.132 10 C -0.103 4.103 11 C -0.274 4.274 12 C 0.391 3.609 13 O -0.427 6.427 14 O -0.276 6.276 15 C 0.014 3.986 16 C -0.005 4.005 17 C -0.587 4.587 18 H 0.084 0.916 19 C -0.193 4.193 20 N -0.566 5.566 21 Si 0.799 3.201 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.199 1.199 25 H 0.121 0.879 26 H 0.135 0.865 27 H 0.089 0.911 28 H 0.180 0.820 29 H 0.183 0.817 30 H 0.164 0.836 31 H 0.121 0.879 32 H 0.083 0.917 33 H 0.075 0.925 34 H 0.021 0.979 35 H 0.026 0.974 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 6.269 21.294 -9.894 24.303 hybrid contribution -0.469 -1.174 0.198 1.280 sum 5.800 20.120 -9.696 23.075 Atomic orbital electron populations 1.20807 0.84532 1.05616 1.05251 1.20522 0.94594 0.84319 0.95552 1.41251 1.03302 1.08597 1.62954 0.71655 1.18379 0.85731 0.92535 1.05612 1.20499 0.88400 1.00757 1.03660 1.21284 0.98154 0.93878 0.98676 1.21256 0.97617 0.94894 1.01165 1.20650 0.91605 0.99619 1.01363 1.18971 0.91302 0.93735 1.06264 1.18905 0.94207 0.88956 1.25305 1.20641 0.72168 0.86916 0.81209 1.90785 1.49254 1.68596 1.34112 1.86729 1.77196 1.29434 1.34265 1.23237 0.98469 0.76374 1.00523 1.18979 0.96404 0.95282 0.89820 1.21392 1.46641 0.97138 0.93579 0.91620 1.25987 0.95014 1.03662 0.94624 1.70108 1.49156 1.39130 0.98225 0.85238 0.78080 0.77974 0.78774 1.18594 1.20037 1.19858 0.87883 0.86500 0.91089 0.82046 0.81688 0.83591 0.87921 0.91698 0.92493 0.97891 0.97351 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.90 10.20 71.24 0.73 -1.17 16 2 C 0.17 4.08 7.12 41.59 0.30 4.38 16 3 N -0.56 -10.14 5.98 -175.35 -1.05 -11.18 16 4 H 0.44 3.81 8.96 -92.70 -0.83 2.98 16 5 C 0.08 1.89 7.26 38.91 0.28 2.18 16 6 C -0.11 -1.84 10.07 22.37 0.23 -1.62 16 7 C -0.10 -1.63 10.01 22.28 0.22 -1.40 16 8 C -0.13 -2.80 10.03 22.28 0.22 -2.58 16 9 C -0.11 -3.40 10.09 22.40 0.23 -3.17 16 10 C -0.10 -3.12 6.36 -20.08 -0.13 -3.24 16 11 C -0.27 -9.16 6.15 -19.03 -0.12 -9.28 16 12 C 0.55 22.95 7.30 70.04 0.51 23.46 16 13 O -0.54 -24.70 16.90 19.52 0.33 -24.37 16 14 O -0.36 -16.61 10.23 -57.50 -0.59 -17.20 16 15 C 0.09 4.24 5.42 71.98 0.39 4.63 16 16 C 0.03 1.83 5.35 29.85 0.16 1.99 16 17 C -0.55 -32.12 9.11 25.60 0.23 -31.89 16 18 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 19 C 0.01 0.35 5.46 84.66 0.46 0.81 16 20 N -0.93 -56.57 13.29 21.45 0.28 -56.28 16 21 Si 0.98 44.36 29.54 68.60 2.03 46.39 16 22 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.07 1.64 7.85 -2.38 -0.02 1.62 16 28 H 0.16 1.34 8.06 -2.91 -0.02 1.31 16 29 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 30 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 31 H 0.10 3.32 8.06 -2.91 -0.02 3.30 16 32 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 33 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 35 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -77.82 321.12 4.99 -72.84 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 0.27 Total: 6.72 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 3.71 Total: -16.91 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -0.76 Total: -67.47 kcal Atomic # 8 Polarization: -41.31 SS G_CDS: -0.26 Total: -41.57 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -77.82 4.99 -72.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053922136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.589 kcal (2) G-P(sol) polarization free energy of solvation -77.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds