Wall clock time and date at job start Mon Mar 30 2020 01:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.46245 * 126.96397 * 2 1 4 4 C 1.39700 * 134.18612 * 0.02562 * 3 2 1 5 5 C 1.36621 * 119.71078 * 179.97438 * 4 3 2 6 6 C 1.38845 * 120.44467 * 359.97438 * 5 4 3 7 7 C 1.37794 * 120.73846 * 0.02562 * 6 5 4 8 8 C 1.39025 * 119.85936 * 359.97438 * 7 6 5 9 9 O 1.34715 * 133.24586 * 180.02562 * 8 7 6 10 10 C 1.34948 * 110.86703 * 179.97438 * 9 8 7 11 11 C 1.46980 * 125.13563 * 180.02562 * 10 9 8 12 12 O 1.21657 * 119.99631 * 179.97438 * 11 10 9 13 13 N 1.34767 * 119.99800 * 359.97438 * 11 10 9 14 14 C 1.46499 * 119.99894 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47150 * 324.99731 * 14 13 11 16 16 C 1.52999 * 109.47553 * 85.00055 * 14 13 11 17 17 C 1.50711 * 109.47096 * 204.99779 * 14 13 11 18 18 H 1.07995 * 119.99902 * 359.97438 * 17 14 13 19 19 C 1.37876 * 119.99612 * 179.97438 * 17 14 13 20 20 N 1.31510 * 120.00517 * 0.02562 * 19 17 14 21 21 Si 1.86807 * 119.99461 * 180.02562 * 19 17 14 22 22 H 1.48496 * 109.47060 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47203 * 120.00030 * 21 19 17 24 24 H 1.48504 * 109.46600 * 239.99658 * 21 19 17 25 25 H 1.08996 * 109.47556 * 89.99290 * 1 2 3 26 26 H 1.08999 * 109.47539 * 210.00103 * 1 2 3 27 27 H 1.09004 * 109.47091 * 329.99935 * 1 2 3 28 28 H 1.07995 * 120.14689 * 359.95424 * 4 3 2 29 29 H 1.08002 * 119.77960 * 180.02562 * 5 4 3 30 30 H 1.07997 * 119.63173 * 179.72189 * 6 5 4 31 31 H 1.08006 * 120.07020 * 179.97438 * 7 6 5 32 32 H 0.97008 * 120.00350 * 359.97438 * 13 11 10 33 33 H 1.09002 * 109.46961 * 299.99975 * 16 14 13 34 34 H 1.09001 * 109.47583 * 59.99547 * 16 14 13 35 35 H 1.08992 * 109.47690 * 180.02562 * 16 14 13 36 36 H 0.97000 * 119.99972 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3864 1.1685 0.0000 4 6 2.1714 2.5489 0.0004 5 6 3.2397 3.4005 0.0008 6 6 4.5360 2.9031 0.0013 7 6 4.7692 1.5450 0.0009 8 6 3.6981 0.6588 0.0005 9 8 3.6125 -0.6857 0.0005 10 6 2.3235 -1.0853 0.0006 11 6 1.8715 -2.4838 0.0011 12 8 0.6819 -2.7385 0.0016 13 7 2.7748 -3.4839 0.0011 14 6 2.3243 -4.8779 0.0011 15 1 1.4117 -4.9648 0.5905 16 6 2.0478 -5.3246 -1.4359 17 6 3.3953 -5.7520 0.6014 18 1 4.3191 -5.3130 0.9479 19 6 3.1954 -7.1120 0.7083 20 7 2.0705 -7.6466 0.2860 21 14 4.5225 -8.1953 1.4532 22 1 5.6829 -7.3565 1.8469 23 1 3.9823 -8.8873 2.6509 24 1 4.9575 -9.2034 0.4532 25 1 -0.3634 0.0001 -1.0276 26 1 -0.3634 -0.8899 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.1652 2.9411 0.0002 29 1 3.0749 4.4679 0.0016 30 1 5.3709 3.5881 -0.0030 31 1 5.7820 1.1698 0.0008 32 1 3.7234 -3.2808 0.0003 33 1 1.2732 -4.6925 -1.8702 34 1 2.9604 -5.2377 -2.0255 35 1 1.7122 -6.3616 -1.4359 36 1 1.9298 -8.6033 0.3616 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318504.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:28 Heat of formation + Delta-G solvation = -35.816681 kcal Electronic energy + Delta-G solvation = -20225.713110 eV Core-core repulsion = 17061.164598 eV Total energy + Delta-G solvation = -3164.548512 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.56812 -40.55828 -38.78425 -36.95147 -34.95375 -34.38137 -31.67164 -31.40605 -30.47565 -28.50643 -27.38593 -25.29740 -23.72912 -22.94425 -21.51008 -21.16918 -19.73453 -18.20821 -18.00996 -17.54602 -17.30964 -16.84405 -16.36832 -15.73771 -15.56377 -15.09972 -14.80423 -14.49027 -14.44895 -14.11463 -13.80837 -13.74808 -13.25505 -13.22352 -13.01946 -12.92373 -12.78929 -12.72910 -12.32786 -12.15522 -11.89995 -11.17400 -11.10558 -10.93803 -10.65366 -9.98868 -9.65346 -9.18838 -8.21633 -6.39337 -0.45996 0.35329 0.80963 1.42586 1.43068 1.45839 1.56468 2.09266 2.26626 2.47244 2.72490 3.08865 3.41264 3.54918 3.79804 3.97537 4.13578 4.31352 4.42412 4.52567 4.64036 4.69633 4.71685 4.86163 4.93661 5.00154 5.01274 5.18376 5.31192 5.37860 5.38860 5.46708 5.50276 5.55786 5.65612 5.82020 6.02200 6.06362 6.64131 6.73905 7.13755 7.34402 8.85137 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029405 B = 0.004159 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.983560 B = 6730.022930 C = 7451.359185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.085 4.085 3 C -0.162 4.162 4 C -0.065 4.065 5 C -0.134 4.134 6 C -0.070 4.070 7 C -0.126 4.126 8 C 0.042 3.958 9 O -0.198 6.198 10 C -0.057 4.057 11 C 0.582 3.418 12 O -0.558 6.558 13 N -0.692 5.692 14 C 0.269 3.731 15 H 0.010 0.990 16 C -0.134 4.134 17 C -0.552 4.552 18 H 0.069 0.931 19 C 0.018 3.982 20 N -0.914 5.914 21 Si 0.974 3.026 22 H -0.263 1.263 23 H -0.280 1.280 24 H -0.276 1.276 25 H 0.083 0.917 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.169 0.831 30 H 0.175 0.825 31 H 0.149 0.851 32 H 0.404 0.596 33 H 0.016 0.984 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.504 22.738 -1.002 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.089 4.089 3 C -0.163 4.163 4 C -0.083 4.083 5 C -0.151 4.151 6 C -0.088 4.088 7 C -0.144 4.144 8 C -0.006 4.006 9 O -0.100 6.100 10 C -0.107 4.107 11 C 0.369 3.631 12 O -0.440 6.440 13 N -0.339 5.339 14 C 0.166 3.834 15 H 0.028 0.972 16 C -0.193 4.193 17 C -0.590 4.590 18 H 0.087 0.913 19 C -0.182 4.182 20 N -0.552 5.552 21 Si 0.799 3.201 22 H -0.187 1.187 23 H -0.206 1.206 24 H -0.201 1.201 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.169 0.831 29 H 0.186 0.814 30 H 0.193 0.807 31 H 0.167 0.833 32 H 0.239 0.761 33 H 0.035 0.965 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.813 22.134 -1.019 22.484 hybrid contribution 0.685 -1.175 0.283 1.389 sum 4.498 20.959 -0.736 21.449 Atomic orbital electron populations 1.20443 0.86550 1.03992 1.03516 1.21762 0.97862 0.89807 0.99432 1.20032 0.91710 0.95317 1.09201 1.20726 1.01809 0.88855 0.96864 1.21286 0.91547 1.01620 1.00692 1.21533 0.98979 0.93051 0.95250 1.20426 0.96775 0.91848 1.05390 1.20407 0.97127 0.80707 1.02381 1.83978 1.26766 1.22244 1.77058 1.21725 0.81877 0.94437 1.12635 1.17046 0.85954 0.82608 0.77529 1.90763 1.16531 1.83183 1.53534 1.46322 1.09603 1.07143 1.70804 1.18537 0.95088 0.75841 0.93900 0.97211 1.21912 0.98284 1.02148 0.96966 1.21518 1.02697 0.92817 1.41933 0.91268 1.25771 0.98047 0.99111 0.95306 1.70035 1.25916 1.12676 1.46573 0.85264 0.78698 0.78250 0.77926 1.18747 1.20615 1.20120 0.89881 0.91371 0.88460 0.83092 0.81373 0.80734 0.83327 0.76086 0.96484 0.94248 0.90824 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.50 9.81 71.23 0.70 -1.80 16 2 C -0.09 -2.79 6.39 -18.35 -0.12 -2.91 16 3 C -0.16 -4.44 6.37 -20.24 -0.13 -4.57 16 4 C -0.06 -1.20 10.06 22.24 0.22 -0.98 16 5 C -0.13 -1.75 9.98 22.04 0.22 -1.53 16 6 C -0.07 -0.94 10.01 22.31 0.22 -0.72 16 7 C -0.13 -2.56 10.07 22.35 0.23 -2.33 16 8 C 0.04 1.20 7.41 23.07 0.17 1.37 16 9 O -0.20 -6.98 10.28 -13.00 -0.13 -7.11 16 10 C -0.06 -2.20 7.07 24.00 0.17 -2.03 16 11 C 0.58 26.31 7.76 86.54 0.67 26.98 16 12 O -0.56 -27.94 14.28 -4.21 -0.06 -28.00 16 13 N -0.69 -32.07 5.06 -449.80 -2.28 -34.35 16 14 C 0.27 14.49 2.56 44.25 0.11 14.60 16 15 H 0.01 0.62 7.58 -2.39 -0.02 0.60 16 16 C -0.13 -6.99 9.26 71.98 0.67 -6.32 16 17 C -0.55 -30.20 8.73 25.60 0.22 -29.98 16 18 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 19 C 0.02 0.99 5.30 84.66 0.45 1.44 16 20 N -0.91 -52.55 11.32 21.45 0.24 -52.31 16 21 Si 0.97 42.64 29.54 68.60 2.03 44.66 16 22 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 25 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.07 2.31 6.37 -2.39 -0.02 2.29 16 27 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 28 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 29 H 0.17 0.93 8.06 -2.91 -0.02 0.91 16 30 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 31 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 32 H 0.40 16.98 8.26 -92.70 -0.77 16.21 16 33 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 4.12 6.07 -2.39 -0.01 4.10 16 36 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 Total: -1.00 -69.03 311.69 3.95 -65.08 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.34 Total: 20.79 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 3.81 Total: -8.77 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -2.04 Total: -86.65 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -0.19 Total: -35.12 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -69.03 3.95 -65.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318504.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.266 kcal (2) G-P(sol) polarization free energy of solvation -69.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds