Wall clock time and date at job start Mon Mar 30 2020 01:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35960 * 116.99842 * 2 1 4 4 C 1.38216 * 120.20441 * 359.74746 * 3 2 1 5 5 C 1.38743 * 120.64157 * 179.73721 * 4 3 2 6 6 C 1.50701 * 119.69968 * 180.23570 * 5 4 3 7 7 C 1.36707 * 120.59844 * 0.26920 * 5 4 3 8 8 C 1.39525 * 119.78096 * 359.97438 * 7 5 4 9 9 C 1.47352 * 121.47319 * 180.02562 * 8 7 5 10 10 O 1.22014 * 121.10303 * 359.96503 * 9 8 7 11 11 C 1.41422 * 117.79552 * 179.97438 * 9 8 7 12 12 C 1.34956 * 120.10342 * 0.02562 * 11 9 8 13 13 N 1.35428 * 122.50710 * 359.97438 * 12 11 9 14 14 C 1.46501 * 119.19841 * 180.02562 * 13 12 11 15 15 C 1.50696 * 109.47154 * 103.20562 * 14 13 12 16 16 H 1.07996 * 120.00179 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99921 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00050 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00075 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47022 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47173 * 119.99528 * 19 17 15 22 22 H 1.48491 * 109.47025 * 239.99857 * 19 17 15 23 23 C 1.37793 * 121.60705 * 0.02562 * 13 12 11 24 24 H 1.09003 * 109.46746 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46785 * 299.99615 * 1 2 3 26 26 H 1.08997 * 109.47083 * 60.00014 * 1 2 3 27 27 H 1.08005 * 119.67828 * 0.02562 * 4 3 2 28 28 H 1.09000 * 109.46968 * 270.02581 * 6 5 4 29 29 H 1.08999 * 109.46797 * 30.03087 * 6 5 4 30 30 H 1.09000 * 109.46642 * 150.02838 * 6 5 4 31 31 H 1.08002 * 120.10807 * 179.97438 * 7 5 4 32 32 H 1.08000 * 119.95170 * 179.97438 * 11 9 8 33 33 H 1.07999 * 118.74553 * 179.97438 * 12 11 9 34 34 H 1.09003 * 109.46632 * 223.20247 * 14 13 12 35 35 H 1.08996 * 109.47381 * 343.20337 * 14 13 12 36 36 H 0.97003 * 119.99769 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2976 2.3733 -0.0053 5 6 1.9179 3.6143 0.0002 6 6 1.0809 4.8674 -0.0004 7 6 3.2816 3.7105 0.0053 8 6 4.0582 2.5514 0.0056 9 6 5.5304 2.6117 0.0116 10 8 6.1174 3.6813 0.0159 11 6 6.2406 1.3887 0.0121 12 6 5.5708 0.2170 0.0066 13 7 4.2181 0.1520 0.0011 14 6 3.5657 -1.1597 -0.0041 15 6 3.0458 -1.4676 1.3764 16 1 3.1876 -0.7575 2.1776 17 6 2.3900 -2.6564 1.6168 18 7 2.2178 -3.5213 0.6413 19 14 1.7462 -3.0384 3.3283 20 1 2.0664 -1.9113 4.2407 21 1 0.2743 -3.2279 3.2726 22 1 2.3864 -4.2798 3.8323 23 6 3.4404 1.2895 0.0001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2191 2.3145 -0.0090 28 1 0.8830 5.1717 -1.0281 29 1 0.1372 4.6742 0.5096 30 1 1.6174 5.6628 0.5171 31 1 3.7562 4.6807 0.0091 32 1 7.3206 1.3922 0.0160 33 1 6.1351 -0.7038 0.0067 34 1 2.7360 -1.1499 -0.7110 35 1 4.2858 -1.9226 -0.2997 36 1 1.7561 -4.3575 0.8104 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064874701.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:38 Heat of formation + Delta-G solvation = -40.533197 kcal Electronic energy + Delta-G solvation = -21359.822479 eV Core-core repulsion = 18195.069443 eV Total energy + Delta-G solvation = -3164.753036 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.27566 -39.96826 -38.87928 -38.06085 -35.08019 -33.17650 -32.92617 -30.95188 -29.04623 -28.55006 -27.52454 -25.11573 -24.37565 -23.61295 -22.16845 -19.32328 -18.83964 -18.67727 -18.11072 -17.36127 -16.68735 -16.61743 -16.29313 -15.95700 -15.69817 -15.32697 -14.79326 -14.64706 -14.33290 -14.28300 -13.88029 -13.73279 -13.26889 -13.11759 -12.96294 -12.80002 -12.70988 -12.58272 -12.47419 -12.14930 -11.72023 -11.71169 -11.36921 -10.56163 -10.48598 -10.00375 -9.57618 -8.35297 -8.04196 -6.26451 -0.17979 0.03815 0.92296 1.36733 1.42747 1.50813 1.96091 2.13780 2.41233 2.45186 3.03183 3.14956 3.44063 3.82770 3.83856 3.95946 4.05547 4.27045 4.37991 4.40668 4.48981 4.65470 4.72947 4.78864 4.86827 4.90063 4.99887 5.08090 5.12424 5.20153 5.30638 5.43606 5.62566 5.66605 5.77967 5.96530 5.98831 6.30806 6.63396 6.74407 6.98558 7.38023 8.88529 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017554 B = 0.007719 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.711843 B = 3626.308967 C = 4664.642510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.281 6.281 3 C 0.091 3.909 4 C -0.167 4.167 5 C -0.082 4.082 6 C -0.104 4.104 7 C -0.098 4.098 8 C -0.188 4.188 9 C 0.403 3.597 10 O -0.566 6.566 11 C -0.366 4.366 12 C 0.201 3.799 13 N -0.469 5.469 14 C 0.236 3.764 15 C -0.513 4.513 16 H 0.041 0.959 17 C 0.038 3.962 18 N -0.914 5.914 19 Si 0.944 3.056 20 H -0.280 1.280 21 H -0.274 1.274 22 H -0.280 1.280 23 C 0.144 3.856 24 H 0.090 0.910 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.162 0.838 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.133 0.867 32 H 0.158 0.842 33 H 0.186 0.814 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.325 7.481 -2.239 9.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.193 6.193 3 C 0.043 3.957 4 C -0.187 4.187 5 C -0.083 4.083 6 C -0.161 4.161 7 C -0.117 4.117 8 C -0.192 4.192 9 C 0.298 3.702 10 O -0.457 6.457 11 C -0.392 4.392 12 C 0.067 3.933 13 N -0.154 5.154 14 C 0.118 3.882 15 C -0.551 4.551 16 H 0.059 0.941 17 C -0.163 4.163 18 N -0.554 5.554 19 Si 0.770 3.230 20 H -0.205 1.205 21 H -0.200 1.200 22 H -0.206 1.206 23 C 0.041 3.959 24 H 0.109 0.891 25 H 0.080 0.920 26 H 0.089 0.911 27 H 0.179 0.821 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.151 0.849 32 H 0.176 0.824 33 H 0.203 0.797 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.185 7.428 -2.281 9.342 hybrid contribution -0.319 -0.625 0.945 1.177 sum -5.505 6.803 -1.336 8.853 Atomic orbital electron populations 1.23193 0.78888 1.04029 1.01748 1.86942 1.21514 1.23301 1.87539 1.18784 0.89864 0.87183 0.99885 1.21335 1.01131 0.90270 1.05944 1.19693 0.93227 0.96040 0.99363 1.20804 0.99027 0.92702 1.03523 1.20610 0.93443 0.97003 1.00616 1.20420 0.96615 0.92056 1.10095 1.18689 0.87520 0.89834 0.74196 1.90600 1.72178 1.33822 1.49058 1.21861 1.01897 0.91581 1.23850 1.22165 0.82626 1.01040 0.87445 1.44138 1.05083 1.07887 1.58285 1.19968 0.93566 0.75848 0.98827 1.21141 1.36862 1.02810 0.94286 0.94104 1.25268 0.95754 0.95666 0.99609 1.69985 1.42926 1.09664 1.32799 0.85733 0.78549 0.77786 0.80923 1.20493 1.19975 1.20629 1.17649 0.89125 0.86365 1.02807 0.89116 0.92047 0.91055 0.82089 0.89717 0.89877 0.90802 0.84878 0.82401 0.79748 0.92181 0.94001 0.92426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.81 113.37 1.11 1.58 16 2 O -0.28 -10.94 5.05 -93.11 -0.47 -11.41 16 3 C 0.09 3.39 6.48 22.60 0.15 3.54 16 4 C -0.17 -4.97 8.67 22.39 0.19 -4.78 16 5 C -0.08 -2.35 5.84 -20.10 -0.12 -2.46 16 6 C -0.10 -1.98 9.99 71.24 0.71 -1.27 16 7 C -0.10 -3.38 9.23 22.22 0.21 -3.18 16 8 C -0.19 -7.53 5.89 -20.02 -0.12 -7.65 16 9 C 0.40 17.02 6.96 25.46 0.18 17.20 16 10 O -0.57 -26.37 17.36 -5.36 -0.09 -26.46 16 11 C -0.37 -13.44 9.96 22.30 0.22 -13.21 16 12 C 0.20 7.16 10.17 83.38 0.85 8.01 16 13 N -0.47 -19.23 2.69 -520.24 -1.40 -20.64 16 14 C 0.24 10.66 4.77 85.63 0.41 11.06 16 15 C -0.51 -25.31 7.27 25.60 0.19 -25.12 16 16 H 0.04 2.15 7.81 -2.91 -0.02 2.12 16 17 C 0.04 1.86 5.46 84.65 0.46 2.32 16 18 N -0.91 -47.02 13.29 21.45 0.28 -46.74 16 19 Si 0.94 40.23 29.54 68.60 2.03 42.26 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 23 C 0.14 5.86 6.41 39.09 0.25 6.11 16 24 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 25 H 0.06 1.57 7.67 -2.39 -0.02 1.55 16 26 H 0.07 1.63 7.65 -2.39 -0.02 1.61 16 27 H 0.16 3.66 6.27 -2.91 -0.02 3.64 16 28 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.28 8.08 -2.39 -0.02 1.26 16 30 H 0.07 1.31 8.07 -2.39 -0.02 1.30 16 31 H 0.13 4.42 7.79 -2.91 -0.02 4.40 16 32 H 0.16 5.05 8.06 -2.91 -0.02 5.03 16 33 H 0.19 5.28 7.83 -2.91 -0.02 5.26 16 34 H 0.06 2.90 5.85 -2.39 -0.01 2.89 16 35 H 0.04 1.91 7.76 -2.39 -0.02 1.89 16 36 H 0.27 13.06 8.31 -92.71 -0.77 12.29 16 Total: -1.00 -62.81 303.62 6.13 -56.68 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: 1.09 Total: 14.16 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 4.69 Total: -7.85 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -1.12 Total: -67.37 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.56 Total: -37.88 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -62.81 6.13 -56.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064874701.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.151 kcal (2) G-P(sol) polarization free energy of solvation -62.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds