Wall clock time and date at job start Mon Mar 30 2020 01:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38744 * 119.65549 * 2 1 4 4 C 1.36741 * 120.41547 * 179.74308 * 3 2 1 5 5 C 1.39407 * 119.71923 * 0.25449 * 4 3 2 6 6 C 1.46776 * 134.37054 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.90746 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.47161 * 84.99927 * 7 6 5 9 9 O 1.21290 * 119.99971 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00054 * 179.97438 * 8 7 6 11 11 C 1.37102 * 119.99921 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00204 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99889 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00037 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00157 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47022 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47284 * 119.99616 * 15 13 11 18 18 H 1.48505 * 109.47227 * 240.00020 * 15 13 11 19 19 C 1.33994 * 106.18660 * 179.97438 * 6 5 4 20 20 O 1.34459 * 110.15123 * 0.02562 * 19 6 5 21 21 C 1.34799 * 110.89002 * 359.97438 * 20 19 6 22 22 C 1.37854 * 119.66211 * 180.27470 * 2 1 3 23 23 C 1.50704 * 120.08560 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.46831 * 90.00427 * 1 2 3 25 25 H 1.09006 * 109.47311 * 209.99882 * 1 2 3 26 26 H 1.08999 * 109.47631 * 330.00048 * 1 2 3 27 27 H 1.08002 * 119.79400 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.14113 * 180.28191 * 4 3 2 29 29 H 1.09001 * 109.47076 * 204.99718 * 7 6 5 30 30 H 1.08999 * 109.47545 * 325.00240 * 7 6 5 31 31 H 0.97004 * 120.00200 * 359.97438 * 10 8 7 32 32 H 0.97001 * 120.00146 * 180.02562 * 14 13 11 33 33 H 1.08002 * 124.92585 * 179.97438 * 19 6 5 34 34 H 1.08996 * 109.47259 * 270.28998 * 23 22 2 35 35 H 1.08997 * 109.46914 * 30.29460 * 23 22 2 36 36 H 1.09002 * 109.46795 * 150.29010 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2057 0.0000 4 6 3.5607 1.2238 0.0053 5 6 4.2678 0.0224 0.0053 6 6 5.6927 -0.3299 0.0095 7 6 6.8604 0.6225 0.0160 8 6 7.1664 1.0326 1.4335 9 8 6.5019 0.5941 2.3485 10 7 8.1791 1.8857 1.6846 11 6 8.4578 2.2583 2.9743 12 1 7.8655 1.8685 3.7889 13 6 9.5015 3.1383 3.2331 14 7 10.2218 3.6130 2.2417 15 14 9.8808 3.6466 4.9901 16 1 8.9306 2.9779 5.9149 17 1 11.2694 3.2469 5.3322 18 1 9.7434 5.1196 5.1199 19 6 5.7463 -1.6688 0.0076 20 8 4.5036 -2.1822 0.0021 21 6 3.5785 -1.2018 0.0007 22 6 2.1892 -1.1979 -0.0057 23 6 1.4299 -2.4997 -0.0114 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6445 2.1358 0.0004 28 1 4.0906 2.1649 0.0099 29 1 7.7322 0.1314 -0.4163 30 1 6.6121 1.5060 -0.5721 31 1 8.7113 2.2356 0.9529 32 1 10.9507 4.2270 2.4224 33 1 6.6559 -2.2512 0.0094 34 1 1.2428 -2.8156 1.0148 35 1 0.4802 -2.3641 -0.5288 36 1 2.0177 -3.2609 -0.5245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069521185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:44 Heat of formation + Delta-G solvation = -24.569245 kcal Electronic energy + Delta-G solvation = -20123.663745 eV Core-core repulsion = 16959.602958 eV Total energy + Delta-G solvation = -3164.060787 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.18278 -38.32632 -38.12204 -34.33760 -33.73141 -32.01548 -31.29987 -31.14240 -27.97149 -27.19744 -25.93461 -24.58715 -22.50195 -21.01582 -20.09247 -18.75253 -17.83844 -16.78583 -16.76192 -16.12068 -15.54034 -15.21130 -14.47336 -14.26827 -14.03395 -13.94277 -13.91544 -13.35048 -12.84309 -12.55365 -12.47584 -12.37150 -12.20448 -12.10063 -11.60774 -11.47167 -11.43410 -11.25036 -11.01668 -10.55204 -10.34376 -10.22525 -9.52222 -9.45250 -8.40333 -8.29497 -7.96872 -7.69328 -6.41878 -3.82659 1.13159 1.58467 2.63153 3.06654 3.16102 3.26778 3.34442 3.85947 3.90996 4.19324 4.71924 4.75206 4.90356 5.02190 5.14275 5.17449 5.23319 5.31639 5.48418 5.49993 5.58172 5.62126 5.66526 5.70436 5.77376 5.93760 5.95484 6.07924 6.24487 6.35725 6.48899 6.59424 6.65745 6.76171 6.89424 7.44631 7.55442 8.06026 8.61093 9.17987 9.54310 10.06164 10.75846 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029085 B = 0.004014 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.471749 B = 6973.656449 C = 7355.249015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.072 4.072 3 C -0.136 4.136 4 C -0.063 4.063 5 C -0.110 4.110 6 C -0.131 4.131 7 C -0.066 4.066 8 C 0.442 3.558 9 O -0.586 6.586 10 N -0.564 5.564 11 C -0.299 4.299 12 H 0.103 0.897 13 C 0.022 3.978 14 N -0.902 5.902 15 Si 0.928 3.072 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.001 4.001 20 O -0.195 6.195 21 C 0.054 3.946 22 C -0.081 4.081 23 C -0.109 4.109 24 H 0.069 0.931 25 H 0.068 0.932 26 H 0.067 0.933 27 H 0.125 0.875 28 H 0.125 0.875 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.393 0.607 32 H 0.271 0.729 33 H 0.205 0.795 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.697 -7.174 -8.755 17.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.073 4.073 3 C -0.155 4.155 4 C -0.081 4.081 5 C -0.111 4.111 6 C -0.132 4.132 7 C -0.107 4.107 8 C 0.228 3.772 9 O -0.470 6.470 10 N -0.200 5.200 11 C -0.429 4.429 12 H 0.121 0.879 13 C -0.179 4.179 14 N -0.543 5.543 15 Si 0.755 3.245 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.065 4.065 20 O -0.096 6.096 21 C 0.007 3.993 22 C -0.081 4.081 23 C -0.166 4.166 24 H 0.088 0.912 25 H 0.087 0.913 26 H 0.086 0.914 27 H 0.143 0.857 28 H 0.143 0.857 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.226 0.774 32 H 0.081 0.919 33 H 0.221 0.779 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -14.053 -7.614 -8.123 17.929 hybrid contribution 0.979 0.782 0.510 1.353 sum -13.074 -6.832 -7.613 16.600 Atomic orbital electron populations 1.20773 0.90764 1.02890 1.02184 1.19420 0.95766 0.91496 1.00574 1.20564 0.93764 0.97376 1.03752 1.20277 0.93612 0.96727 0.97467 1.19734 0.92719 0.93832 1.04767 1.20556 0.92625 0.93776 1.06286 1.19933 0.95002 0.98207 0.97522 1.19804 0.83835 0.83962 0.89618 1.90547 1.51941 1.58332 1.46188 1.41890 1.28592 1.40242 1.09294 1.19762 1.14043 1.24254 0.84792 0.87942 1.25253 0.96178 0.96892 0.99591 1.69619 1.20657 1.32625 1.31407 0.85817 0.78306 0.78275 0.82067 1.19248 1.20725 1.20730 1.23598 0.85513 0.93522 1.03854 1.83934 1.14339 1.34648 1.76722 1.19320 0.90398 0.86024 1.03559 1.18461 0.87769 0.95961 1.05933 1.20714 0.99629 0.93904 1.02356 0.91195 0.91332 0.91364 0.85690 0.85669 0.89196 0.89332 0.77391 0.91924 0.77880 0.91250 0.91229 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.16 36.00 0.33 -0.67 16 2 C -0.07 -0.95 5.88 -104.58 -0.61 -1.56 16 3 C -0.14 -1.90 9.62 -39.94 -0.38 -2.28 16 4 C -0.06 -1.04 10.05 -39.69 -0.40 -1.44 16 5 C -0.11 -2.00 6.38 -105.16 -0.67 -2.67 16 6 C -0.13 -2.37 4.85 -102.67 -0.50 -2.86 16 7 C -0.07 -1.19 6.25 -29.04 -0.18 -1.37 16 8 C 0.44 10.58 7.78 -10.98 -0.09 10.50 16 9 O -0.59 -16.40 15.61 5.55 0.09 -16.31 16 10 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 11 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 12 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 13 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 14 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 15 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 C 0.00 -0.01 11.89 29.24 0.35 0.34 16 20 O -0.19 -3.28 10.58 3.91 0.04 -3.24 16 21 C 0.05 0.93 7.09 -38.47 -0.27 0.66 16 22 C -0.08 -1.16 5.89 -104.50 -0.62 -1.78 16 23 C -0.11 -1.20 9.17 36.01 0.33 -0.86 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.56 6.68 -51.93 -0.35 0.21 16 26 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 27 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 28 H 0.13 1.98 8.06 -52.49 -0.42 1.56 16 29 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 30 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.39 9.48 7.90 -40.82 -0.32 9.15 16 32 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 33 H 0.20 2.51 8.06 -52.49 -0.42 2.08 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 36 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 LS Contribution 314.24 15.07 4.74 4.74 Total: -1.00 -33.41 314.24 -6.78 -40.19 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -4.33 Total: 8.75 kcal Atomic # 6 Polarization: -9.09 SS G_CDS: -2.95 Total: -12.04 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: 0.67 Total: -38.24 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: 0.13 Total: -19.55 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -33.41 -6.78 -40.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069521185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.618 kcal (2) G-P(sol) polarization free energy of solvation -33.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds