Wall clock time and date at job start Mon Mar 30 2020 01:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38744 * 119.65549 * 2 1 4 4 C 1.36741 * 120.41547 * 179.74308 * 3 2 1 5 5 C 1.39407 * 119.71923 * 0.25449 * 4 3 2 6 6 C 1.46776 * 134.37054 * 179.97438 * 5 4 3 7 7 C 1.50696 * 126.90746 * 0.02562 * 6 5 4 8 8 C 1.50702 * 109.47161 * 84.99927 * 7 6 5 9 9 O 1.21290 * 119.99971 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00054 * 179.97438 * 8 7 6 11 11 C 1.37102 * 119.99921 * 180.02562 * 10 8 7 12 12 H 1.07999 * 120.00204 * 359.97438 * 11 10 8 13 13 C 1.38952 * 119.99889 * 180.02562 * 11 10 8 14 14 N 1.31412 * 120.00037 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 120.00157 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47022 * 359.97438 * 15 13 11 17 17 H 1.48495 * 109.47284 * 119.99616 * 15 13 11 18 18 H 1.48505 * 109.47227 * 240.00020 * 15 13 11 19 19 C 1.33994 * 106.18660 * 179.97438 * 6 5 4 20 20 O 1.34459 * 110.15123 * 0.02562 * 19 6 5 21 21 C 1.34799 * 110.89002 * 359.97438 * 20 19 6 22 22 C 1.37854 * 119.66211 * 180.27470 * 2 1 3 23 23 C 1.50704 * 120.08560 * 359.97438 * 22 2 1 24 24 H 1.08999 * 109.46831 * 90.00427 * 1 2 3 25 25 H 1.09006 * 109.47311 * 209.99882 * 1 2 3 26 26 H 1.08999 * 109.47631 * 330.00048 * 1 2 3 27 27 H 1.08002 * 119.79400 * 0.02562 * 3 2 1 28 28 H 1.08001 * 120.14113 * 180.28191 * 4 3 2 29 29 H 1.09001 * 109.47076 * 204.99718 * 7 6 5 30 30 H 1.08999 * 109.47545 * 325.00240 * 7 6 5 31 31 H 0.97004 * 120.00200 * 359.97438 * 10 8 7 32 32 H 0.97001 * 120.00146 * 180.02562 * 14 13 11 33 33 H 1.08002 * 124.92585 * 179.97438 * 19 6 5 34 34 H 1.08996 * 109.47259 * 270.28998 * 23 22 2 35 35 H 1.08997 * 109.46914 * 30.29460 * 23 22 2 36 36 H 1.09002 * 109.46795 * 150.29010 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1934 1.2057 0.0000 4 6 3.5607 1.2238 0.0053 5 6 4.2678 0.0224 0.0053 6 6 5.6927 -0.3299 0.0095 7 6 6.8604 0.6225 0.0160 8 6 7.1664 1.0326 1.4335 9 8 6.5019 0.5941 2.3485 10 7 8.1791 1.8857 1.6846 11 6 8.4578 2.2583 2.9743 12 1 7.8655 1.8685 3.7889 13 6 9.5015 3.1383 3.2331 14 7 10.2218 3.6130 2.2417 15 14 9.8808 3.6466 4.9901 16 1 8.9306 2.9779 5.9149 17 1 11.2694 3.2469 5.3322 18 1 9.7434 5.1196 5.1199 19 6 5.7463 -1.6688 0.0076 20 8 4.5036 -2.1822 0.0021 21 6 3.5785 -1.2018 0.0007 22 6 2.1892 -1.1979 -0.0057 23 6 1.4299 -2.4997 -0.0114 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6445 2.1358 0.0004 28 1 4.0906 2.1649 0.0099 29 1 7.7322 0.1314 -0.4163 30 1 6.6121 1.5060 -0.5721 31 1 8.7113 2.2356 0.9529 32 1 10.9507 4.2270 2.4224 33 1 6.6559 -2.2512 0.0094 34 1 1.2428 -2.8156 1.0148 35 1 0.4802 -2.3641 -0.5288 36 1 2.0177 -3.2609 -0.5245 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069521185.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:44 Heat of formation + Delta-G solvation = -45.383446 kcal Electronic energy + Delta-G solvation = -20124.566317 eV Core-core repulsion = 16959.602958 eV Total energy + Delta-G solvation = -3164.963358 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.40430 -40.07512 -39.39528 -36.11619 -35.23972 -33.43741 -33.04727 -32.27982 -29.40173 -28.29085 -26.90669 -26.55524 -23.68171 -22.12104 -21.74004 -20.39014 -19.73818 -18.02959 -17.93036 -17.78851 -17.01801 -16.50358 -16.33125 -15.78643 -15.67621 -15.31399 -14.80964 -14.50632 -14.35665 -13.84043 -13.70969 -13.57848 -13.37804 -13.36414 -13.00901 -12.89705 -12.61281 -12.50861 -12.42587 -12.37085 -12.13328 -11.66851 -11.53673 -10.76812 -10.29072 -10.03452 -9.47206 -8.88887 -8.48390 -5.97554 -0.02453 0.40846 1.34569 1.34713 1.40825 1.54633 1.88806 2.03053 2.29416 2.68990 3.18056 3.33750 3.56776 3.62978 3.91922 3.95099 4.13185 4.25684 4.31882 4.42661 4.55193 4.61443 4.62936 4.73776 4.77956 4.87767 4.89150 4.93231 5.13235 5.22646 5.35206 5.39124 5.46160 5.51473 5.58281 5.78269 5.98504 6.23289 6.57588 7.10574 7.53800 8.10029 8.68899 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029085 B = 0.004014 C = 0.003806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.471749 B = 6973.656449 C = 7355.249015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.072 4.072 3 C -0.132 4.132 4 C -0.094 4.094 5 C -0.142 4.142 6 C -0.168 4.168 7 C -0.050 4.050 8 C 0.441 3.559 9 O -0.630 6.630 10 N -0.571 5.571 11 C -0.335 4.335 12 H 0.075 0.925 13 C -0.011 4.011 14 N -0.919 5.919 15 Si 0.991 3.009 16 H -0.276 1.276 17 H -0.268 1.268 18 H -0.270 1.270 19 C 0.007 3.993 20 O -0.200 6.200 21 C 0.027 3.973 22 C -0.089 4.089 23 C -0.107 4.107 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.152 0.848 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.398 0.602 32 H 0.278 0.722 33 H 0.238 0.762 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.906 -7.403 -9.192 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.073 4.073 3 C -0.150 4.150 4 C -0.112 4.112 5 C -0.143 4.143 6 C -0.170 4.170 7 C -0.090 4.090 8 C 0.229 3.771 9 O -0.518 6.518 10 N -0.208 5.208 11 C -0.464 4.464 12 H 0.093 0.907 13 C -0.211 4.211 14 N -0.559 5.559 15 Si 0.815 3.185 16 H -0.201 1.201 17 H -0.194 1.194 18 H -0.195 1.195 19 C -0.057 4.057 20 O -0.101 6.101 21 C -0.020 4.020 22 C -0.090 4.090 23 C -0.163 4.163 24 H 0.108 0.892 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.170 0.830 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.123 0.877 31 H 0.232 0.768 32 H 0.088 0.912 33 H 0.254 0.746 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.255 -7.835 -8.595 19.182 hybrid contribution 1.269 0.844 0.617 1.644 sum -13.985 -6.990 -7.977 17.553 Atomic orbital electron populations 1.20879 0.87416 1.04229 1.03841 1.19961 0.98075 0.90579 0.98652 1.20965 0.92947 0.99172 1.01947 1.20455 0.95005 0.96181 0.99599 1.20080 0.93248 0.94969 1.06002 1.20731 0.92778 0.94691 1.08755 1.19822 0.96518 0.99322 0.93362 1.20820 0.82216 0.82306 0.91718 1.90509 1.53160 1.59617 1.48478 1.41939 1.29324 1.40863 1.08661 1.19680 1.15185 1.26101 0.85455 0.90669 1.26014 0.95352 0.96133 1.03551 1.69671 1.20735 1.32552 1.32984 0.84898 0.78245 0.78218 0.77134 1.20067 1.19354 1.19474 1.24250 0.86288 0.93459 1.01688 1.83920 1.14620 1.34819 1.76763 1.19808 0.91576 0.85694 1.04919 1.19026 0.87040 0.98076 1.04855 1.20784 1.00405 0.91986 1.03124 0.89160 0.89971 0.90138 0.82996 0.86314 0.85921 0.87747 0.76780 0.91217 0.74584 0.90618 0.88360 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 9.16 71.23 0.65 -0.92 16 2 C -0.07 -1.76 5.88 -19.84 -0.12 -1.88 16 3 C -0.13 -3.58 9.62 22.04 0.21 -3.36 16 4 C -0.09 -3.20 10.05 22.20 0.22 -2.97 16 5 C -0.14 -5.31 6.38 -20.21 -0.13 -5.44 16 6 C -0.17 -6.16 4.85 -18.60 -0.09 -6.25 16 7 C -0.05 -1.81 6.25 29.10 0.18 -1.63 16 8 C 0.44 21.69 7.78 87.66 0.68 22.37 16 9 O -0.63 -36.69 15.61 -3.06 -0.05 -36.73 16 10 N -0.57 -29.79 5.29 -306.98 -1.62 -31.41 16 11 C -0.33 -19.35 9.68 84.04 0.81 -18.54 16 12 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 13 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 14 N -0.92 -49.74 13.05 21.66 0.28 -49.46 16 15 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 16 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 C 0.01 0.24 11.89 66.85 0.79 1.03 16 20 O -0.20 -6.73 10.58 -8.93 -0.09 -6.82 16 21 C 0.03 0.93 7.09 22.99 0.16 1.09 16 22 C -0.09 -2.47 5.89 -19.79 -0.12 -2.59 16 23 C -0.11 -2.10 9.17 71.24 0.65 -1.44 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.08 1.01 6.68 -2.38 -0.02 0.99 16 26 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 27 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 28 H 0.12 3.97 8.06 -2.91 -0.02 3.95 16 29 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 30 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 31 H 0.40 19.51 7.90 -92.70 -0.73 18.78 16 32 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 33 H 0.24 5.51 8.06 -2.91 -0.02 5.48 16 34 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.10 1.34 6.70 -2.39 -0.02 1.32 16 36 H 0.06 1.28 8.09 -2.39 -0.02 1.26 16 Total: -1.00 -74.49 314.24 5.31 -69.18 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 0.38 Total: 30.45 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 4.39 Total: -20.63 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -1.34 Total: -80.87 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.14 Total: -43.56 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -74.49 5.31 -69.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069521185.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.795 kcal (2) G-P(sol) polarization free energy of solvation -74.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds