Wall clock time and date at job start Mon Mar 30 2020 00:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86798 * 119.99541 * 2 1 4 4 H 1.48500 * 109.47193 * 269.99958 * 3 2 1 5 5 H 1.48500 * 109.47498 * 29.99693 * 3 2 1 6 6 H 1.48507 * 109.47100 * 150.00082 * 3 2 1 7 7 C 1.37869 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00463 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99810 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46904 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.46935 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.46988 * 180.02562 * 11 10 9 13 13 C 1.34782 * 119.99712 * 180.02562 * 12 11 10 14 14 O 1.21648 * 120.00410 * 359.97438 * 13 12 11 15 15 C 1.47080 * 119.99449 * 179.97438 * 13 12 11 16 16 C 1.36055 * 127.14665 * 0.08031 * 15 13 12 17 17 O 1.33808 * 109.85344 * 180.02562 * 16 15 13 18 18 C 1.34910 * 111.34932 * 359.93891 * 17 16 15 19 19 C 1.38965 * 133.11767 * 180.02562 * 18 17 16 20 20 C 1.37845 * 119.97415 * 179.97438 * 19 18 17 21 21 C 1.38679 * 120.65690 * 0.02562 * 20 19 18 22 22 C 1.37846 * 120.20117 * 359.97438 * 21 20 19 23 23 C 1.39114 * 119.62699 * 0.02562 * 22 21 20 24 24 H 0.96997 * 119.99949 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.47000 * 60.00576 * 9 7 2 26 26 H 1.08993 * 109.47115 * 300.00205 * 9 7 2 27 27 H 1.08997 * 109.47424 * 60.00477 * 10 9 7 28 28 H 1.09001 * 109.47154 * 299.99691 * 10 9 7 29 29 H 1.08999 * 109.47740 * 60.00000 * 11 10 9 30 30 H 1.09007 * 109.46987 * 299.99824 * 11 10 9 31 31 H 0.96992 * 120.00041 * 359.97438 * 12 11 10 32 32 H 1.07997 * 125.06879 * 359.96167 * 16 15 13 33 33 H 1.07996 * 120.01384 * 0.22498 * 19 18 17 34 34 H 1.07997 * 119.66934 * 179.97438 * 20 19 18 35 35 H 1.08002 * 119.90078 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.18833 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 3.0847 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0017 10 6 2.2455 -3.6620 0.0027 11 6 1.4805 -4.9870 0.0033 12 7 2.4326 -6.1005 0.0049 13 6 1.9833 -7.3712 0.0051 14 8 0.7873 -7.5936 0.0044 15 6 2.9392 -8.4891 0.0061 16 6 4.2974 -8.4087 0.0085 17 8 4.8254 -9.6382 0.0082 18 6 3.8646 -10.5853 0.0070 19 6 3.9003 -11.9745 0.0067 20 6 2.7244 -12.6936 0.0059 21 6 1.4987 -12.0448 0.0048 22 6 1.4433 -10.6674 0.0051 23 6 2.6239 -9.9317 0.0059 24 1 -0.4850 0.8400 -0.0004 25 1 0.6243 -2.5575 -0.8880 26 1 0.6249 -2.5562 0.8919 27 1 2.8721 -3.6035 0.8927 28 1 2.8721 -3.6050 -0.8873 29 1 0.8541 -5.0454 -0.8868 30 1 0.8536 -5.0442 0.8932 31 1 3.3862 -5.9232 0.0051 32 1 4.8646 -7.4896 0.0094 33 1 4.8490 -12.4905 0.0112 34 1 2.7579 -13.7731 0.0053 35 1 0.5848 -12.6204 0.0037 36 1 0.4886 -10.1623 0.0046 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070988680.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:54 Heat of formation + Delta-G solvation = -46.320093 kcal Electronic energy + Delta-G solvation = -19271.020342 eV Core-core repulsion = 16106.016367 eV Total energy + Delta-G solvation = -3165.003975 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.63118 -40.53831 -38.86063 -36.98400 -35.25112 -34.09865 -32.91634 -31.41842 -30.51366 -28.56139 -25.63350 -24.54320 -23.66176 -23.20607 -22.34634 -20.97114 -19.01390 -18.56617 -18.31022 -17.39790 -16.99234 -16.85412 -16.62669 -16.53151 -16.28139 -15.31095 -15.26234 -14.84992 -14.59548 -14.22655 -13.88546 -13.67608 -13.55612 -13.30492 -12.87201 -12.75552 -12.55797 -12.38333 -11.99542 -11.68148 -11.64134 -11.27194 -11.24561 -11.04680 -10.55354 -10.20424 -9.70303 -9.29272 -8.19431 -6.30994 -0.26486 0.27056 0.68476 1.42181 1.43489 1.54383 1.60666 2.06938 2.16194 2.42633 2.73330 3.14569 3.38231 3.47436 3.78675 4.04573 4.13161 4.20331 4.23585 4.33778 4.39064 4.51954 4.53706 4.78864 4.93382 4.96341 5.09444 5.17099 5.20142 5.36168 5.37116 5.48707 5.52267 5.56348 5.70632 5.84345 6.02110 6.21830 6.50445 6.86925 7.14662 7.38819 8.92793 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.048848 B = 0.002742 C = 0.002602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.067311 B =10210.850873 C =10758.169840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.259 1.259 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.101 4.101 11 C 0.131 3.869 12 N -0.706 5.706 13 C 0.581 3.419 14 O -0.586 6.586 15 C -0.267 4.267 16 C 0.104 3.896 17 O -0.181 6.181 18 C 0.026 3.974 19 C -0.102 4.102 20 C -0.089 4.089 21 C -0.126 4.126 22 C -0.097 4.097 23 C -0.123 4.123 24 H 0.263 0.737 25 H -0.009 1.009 26 H -0.009 1.009 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.416 0.584 32 H 0.265 0.735 33 H 0.163 0.837 34 H 0.176 0.824 35 H 0.154 0.846 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.593 -25.176 0.026 28.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.212 1.212 6 H -0.183 1.183 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.016 4.016 10 C -0.139 4.139 11 C 0.007 3.993 12 N -0.358 5.358 13 C 0.371 3.629 14 O -0.468 6.468 15 C -0.272 4.272 16 C 0.035 3.965 17 O -0.080 6.080 18 C -0.020 4.020 19 C -0.120 4.120 20 C -0.107 4.107 21 C -0.144 4.144 22 C -0.115 4.115 23 C -0.124 4.124 24 H 0.072 0.928 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.253 0.747 32 H 0.280 0.720 33 H 0.181 0.819 34 H 0.193 0.807 35 H 0.172 0.828 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.889 -25.286 0.031 27.941 hybrid contribution -0.248 1.548 -0.013 1.568 sum 11.641 -23.737 0.018 26.438 Atomic orbital electron populations 1.70120 1.08001 1.27786 1.51784 1.26043 0.95738 1.03635 0.94835 0.85406 0.78705 0.78237 0.78440 1.19841 1.21184 1.18281 1.21687 0.93825 0.91910 1.50309 0.91310 1.18953 0.94502 0.93050 0.95051 1.21602 0.98440 0.91354 1.02462 1.21280 0.91914 0.85291 1.00814 1.45731 1.11258 1.04377 1.74431 1.17501 0.87287 0.82567 0.75582 1.90752 1.18212 1.85374 1.52460 1.20940 0.94589 0.92692 1.18966 1.25284 0.91646 0.87652 0.91891 1.83871 1.35234 1.14211 1.74652 1.19936 0.84829 0.91764 1.05495 1.20429 1.01567 0.86964 1.03056 1.21425 0.90089 1.01830 0.97328 1.21473 1.00129 0.92788 1.00001 1.20789 0.96700 0.94855 0.99140 1.19765 0.95288 0.91655 1.05685 0.92846 0.99026 0.99019 0.90978 0.90975 0.93149 0.93158 0.74668 0.71957 0.81903 0.80691 0.82814 0.86885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.27 13.29 21.45 0.28 -56.98 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.54 -29.75 9.11 25.60 0.23 -29.52 16 8 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 9 C 0.02 1.14 4.97 29.85 0.15 1.29 16 10 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 11 C 0.13 4.62 5.67 86.38 0.49 5.11 16 12 N -0.71 -19.49 5.55 -466.68 -2.59 -22.08 16 13 C 0.58 18.63 7.80 86.56 0.68 19.30 16 14 O -0.59 -24.25 16.28 -4.18 -0.07 -24.32 16 15 C -0.27 -6.88 6.31 -18.97 -0.12 -7.00 16 16 C 0.10 1.71 11.52 67.31 0.78 2.49 16 17 O -0.18 -3.37 10.53 -3.86 -0.04 -3.41 16 18 C 0.03 0.55 7.39 22.93 0.17 0.71 16 19 C -0.10 -1.51 10.06 22.35 0.22 -1.29 16 20 C -0.09 -1.13 10.01 22.28 0.22 -0.91 16 21 C -0.13 -2.18 10.04 22.28 0.22 -1.95 16 22 C -0.10 -2.48 9.88 22.39 0.22 -2.25 16 23 C -0.12 -3.26 6.29 -20.09 -0.13 -3.38 16 24 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 25 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 26 H -0.01 -0.49 8.14 -2.39 -0.02 -0.50 16 27 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 29 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 31 H 0.42 7.74 7.40 -92.71 -0.69 7.06 16 32 H 0.26 1.43 7.41 -2.91 -0.02 1.41 16 33 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 34 H 0.18 0.81 8.06 -2.91 -0.02 0.79 16 35 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 36 H 0.11 3.34 7.54 -2.91 -0.02 3.32 16 Total: -1.00 -77.98 317.70 3.79 -74.19 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: 0.41 Total: 7.91 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 3.76 Total: -20.83 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -2.30 Total: -79.07 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.11 Total: -27.73 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -77.98 3.79 -74.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070988680.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.871 kcal (2) G-P(sol) polarization free energy of solvation -77.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds