Wall clock time and date at job start Mon Mar 30 2020 01:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47045 * 269.99825 * 3 2 1 5 5 H 1.48499 * 109.47085 * 29.99787 * 3 2 1 6 6 H 1.48499 * 109.46871 * 149.99930 * 3 2 1 7 7 C 1.37876 * 119.99929 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99622 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00169 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47290 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46905 * 180.02562 * 10 9 7 12 12 S 1.81400 * 109.46855 * 180.02562 * 11 10 9 13 13 O 1.42094 * 110.54763 * 68.37526 * 12 11 10 14 14 O 1.42101 * 110.54104 * 291.62114 * 12 11 10 15 15 N 1.65600 * 104.45101 * 179.97438 * 12 11 10 16 16 C 1.46503 * 119.99978 * 64.99289 * 15 12 11 17 17 H 1.09005 * 109.81071 * 24.48053 * 16 15 12 18 18 C 1.53018 * 109.64413 * 263.94671 * 16 15 12 19 19 C 1.50072 * 110.09204 * 190.68668 * 18 16 15 20 20 C 1.29443 * 124.07412 * 17.59192 * 19 18 16 21 21 C 1.50070 * 124.07366 * 359.00582 * 20 19 18 22 22 C 1.53031 * 110.14643 * 17.39440 * 21 20 19 23 23 H 0.97005 * 119.99860 * 359.97438 * 1 2 3 24 24 H 1.08999 * 109.46868 * 59.99767 * 9 7 2 25 25 H 1.09005 * 109.47106 * 300.00238 * 9 7 2 26 26 H 1.08999 * 109.46783 * 60.00171 * 10 9 7 27 27 H 1.08991 * 109.47143 * 300.00152 * 10 9 7 28 28 H 1.08999 * 109.47344 * 60.00412 * 11 10 9 29 29 H 1.09001 * 109.47169 * 299.99388 * 11 10 9 30 30 H 0.96999 * 120.00483 * 245.00174 * 15 12 11 31 31 H 1.08997 * 109.36158 * 311.08798 * 18 16 15 32 32 H 1.09002 * 109.36095 * 70.81362 * 18 16 15 33 33 H 1.08005 * 117.96869 * 197.35042 * 19 18 16 34 34 H 1.08002 * 117.96781 * 179.29694 * 20 19 18 35 35 H 1.08997 * 109.35957 * 137.60317 * 21 20 19 36 36 H 1.09004 * 109.35788 * 257.32815 * 21 20 19 37 37 H 1.08996 * 109.63819 * 70.24884 * 22 21 20 38 38 H 1.09001 * 109.63955 * 190.88160 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 6 5.5515 -2.6365 0.0035 12 16 6.1561 -4.3468 0.0041 13 8 5.8611 -4.9806 -1.2329 14 8 5.8590 -4.9802 1.2410 15 7 7.8058 -4.2019 0.0047 16 6 8.4881 -3.6033 1.1547 17 1 7.8712 -3.7101 2.0470 18 6 8.7482 -2.1200 0.8835 19 6 9.6680 -1.5585 1.9280 20 6 10.4123 -2.2806 2.7028 21 6 10.4435 -3.7808 2.6794 22 6 9.8369 -4.3003 1.3740 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6801 0.8911 25 1 3.8752 -0.6804 -0.8889 26 1 3.6585 -3.1509 -0.8875 27 1 3.6578 -3.1498 0.8924 28 1 5.9141 -2.1223 0.8935 29 1 5.9155 -2.1233 -0.8865 30 1 8.3203 -4.5133 -0.7563 31 1 9.2022 -2.0068 -0.1009 32 1 7.8037 -1.5766 0.9104 33 1 9.7147 -0.4851 2.0376 34 1 11.0469 -1.7719 3.4134 35 1 11.4756 -4.1220 2.7591 36 1 9.8691 -4.1673 3.5213 37 1 10.5056 -4.0738 0.5437 38 1 9.6857 -5.3775 1.4435 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076306927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:45 Heat of formation + Delta-G solvation = -81.709447 kcal Electronic energy + Delta-G solvation = -19263.979312 eV Core-core repulsion = 16232.884691 eV Total energy + Delta-G solvation = -3031.094621 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.12440 -36.92734 -35.81458 -34.83105 -34.47193 -32.23348 -31.12292 -29.13950 -28.37498 -23.88461 -23.28068 -22.37467 -20.51998 -19.44417 -18.32543 -17.23677 -17.08034 -16.83736 -16.01795 -15.75062 -15.16552 -14.41453 -14.19971 -14.02771 -13.90229 -13.68222 -12.97895 -12.79657 -12.66782 -12.38071 -12.17435 -12.07057 -11.94044 -11.87652 -11.59194 -11.35142 -11.12581 -10.96551 -10.91845 -10.77008 -10.10217 -9.89450 -9.83227 -9.42641 -9.26568 -9.22987 -8.59295 -6.08933 -4.08222 0.39210 2.01840 2.76081 3.25921 3.33518 3.35348 3.87834 4.27315 4.35565 4.39705 4.45300 4.59331 4.86893 4.94600 5.00352 5.03327 5.13710 5.17747 5.24553 5.27240 5.36853 5.55418 5.61971 5.73583 5.81155 5.85842 6.04778 6.13742 6.25939 6.34340 6.65887 6.66458 6.85489 7.11885 7.25959 7.70532 8.47163 8.95599 9.52175 11.04395 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.021019 B = 0.004738 C = 0.004062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.789839 B = 5908.149289 C = 6892.191786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.097 4.097 11 C -0.617 4.617 12 S 2.601 3.399 13 O -0.962 6.962 14 O -0.960 6.960 15 N -1.119 6.119 16 C 0.146 3.854 17 H 0.097 0.903 18 C -0.119 4.119 19 C -0.149 4.149 20 C -0.160 4.160 21 C -0.091 4.091 22 C -0.122 4.122 23 H 0.264 0.736 24 H 0.020 0.980 25 H 0.016 0.984 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.127 0.873 29 H 0.130 0.870 30 H 0.415 0.585 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.755 -5.093 2.972 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.137 4.137 11 C -0.749 4.749 12 S 2.697 3.303 13 O -0.952 6.952 14 O -0.950 6.950 15 N -0.876 5.876 16 C 0.038 3.962 17 H 0.115 0.885 18 C -0.158 4.158 19 C -0.168 4.168 20 C -0.178 4.178 21 C -0.129 4.129 22 C -0.161 4.161 23 H 0.074 0.926 24 H 0.038 0.962 25 H 0.034 0.966 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.145 0.855 29 H 0.148 0.852 30 H 0.248 0.752 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 23.015 -5.767 3.131 23.932 hybrid contribution 0.769 1.731 -0.335 1.923 sum 23.784 -4.036 2.796 24.285 Atomic orbital electron populations 1.69914 1.06288 1.26975 1.50712 1.25024 0.94750 0.99156 0.94456 0.86776 0.80321 0.83639 0.78524 1.20227 1.21267 1.19065 1.21138 0.89270 0.94778 1.51328 0.90727 1.19527 0.97326 0.90730 0.96702 1.21311 0.86601 1.02942 1.02820 1.30707 1.09576 1.23449 1.11145 1.05259 0.72780 0.77992 0.74290 1.93585 1.82809 1.73681 1.45125 1.93579 1.82960 1.72753 1.45658 1.55786 1.26435 1.77649 1.27682 1.20889 0.95114 0.91806 0.88376 0.88474 1.21169 1.00069 0.95478 0.99062 1.21986 0.97555 0.99825 0.97406 1.22073 0.99941 0.95760 1.00044 1.20469 1.01474 0.93092 0.97849 1.21864 0.95405 1.00558 0.98249 0.92623 0.96193 0.96610 0.90974 0.90959 0.85454 0.85194 0.75151 0.89681 0.90105 0.87502 0.87750 0.90624 0.90328 0.91083 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.71 13.96 55.43 0.77 -26.93 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.11 6.54 56.52 0.37 -5.74 16 7 C -0.53 -14.99 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 9 C 0.00 -0.10 4.04 -27.89 -0.11 -0.21 16 10 C -0.10 -1.88 5.16 -26.73 -0.14 -2.02 16 11 C -0.62 -8.74 5.53 37.16 0.21 -8.54 16 12 S 2.60 36.47 5.44 -107.50 -0.58 35.88 16 13 O -0.96 -16.39 18.08 -57.54 -1.04 -17.43 16 14 O -0.96 -16.43 17.41 -57.54 -1.00 -17.44 16 15 N -1.12 -11.12 5.38 -4.70 -0.03 -11.15 16 16 C 0.15 1.35 2.74 -67.71 -0.19 1.16 16 17 H 0.10 0.99 7.49 -51.93 -0.39 0.60 16 18 C -0.12 -1.01 5.65 -28.18 -0.16 -1.17 16 19 C -0.15 -1.22 9.80 -35.90 -0.35 -1.57 16 20 C -0.16 -1.21 9.80 -35.90 -0.35 -1.57 16 21 C -0.09 -0.63 6.12 -28.17 -0.17 -0.81 16 22 C -0.12 -0.92 5.56 -26.51 -0.15 -1.07 16 23 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 24 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 25 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 26 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 27 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.13 1.56 6.75 -51.92 -0.35 1.21 16 29 H 0.13 1.57 8.14 -51.92 -0.42 1.14 16 30 H 0.41 3.28 8.80 -34.48 -0.30 2.98 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.70 6.20 -51.93 -0.32 0.38 16 33 H 0.11 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.10 0.68 8.06 -52.49 -0.42 0.25 16 35 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.47 8.12 -51.93 -0.42 0.05 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 319.55 15.07 4.82 4.82 Total: -1.00 -35.14 319.55 -9.52 -44.66 By element: Atomic # 1 Polarization: 6.09 SS G_CDS: -5.94 Total: 0.14 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: -1.84 Total: -29.25 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.75 Total: -38.08 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -2.04 Total: -34.86 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 16 Polarization: 36.47 SS G_CDS: -0.58 Total: 35.88 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -35.14 -9.52 -44.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076306927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.046 kcal (2) G-P(sol) polarization free energy of solvation -35.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds