Wall clock time and date at job start Mon Mar 30 2020 01:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48499 * 109.46667 * 269.99814 * 3 2 1 5 5 H 1.48495 * 109.47327 * 29.99481 * 3 2 1 6 6 H 1.48495 * 109.47175 * 149.99976 * 3 2 1 7 7 C 1.38635 * 119.99530 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00212 * 0.02562 * 7 2 1 9 9 O 1.34820 * 119.99755 * 179.97438 * 7 2 1 10 10 C 1.35772 * 117.00103 * 185.35847 * 9 7 2 11 11 C 1.38907 * 119.99992 * 185.85365 * 10 9 7 12 12 C 1.38007 * 120.00106 * 180.25326 * 11 10 9 13 13 C 1.38920 * 119.99788 * 359.49736 * 12 11 10 14 14 N 1.39991 * 120.00040 * 180.23167 * 13 12 11 15 15 C 1.34773 * 119.99960 * 325.27955 * 14 13 12 16 16 O 1.21292 * 120.00073 * 354.56128 * 15 14 13 17 17 C 1.50698 * 119.99794 * 174.55158 * 15 14 13 18 18 C 1.54633 * 111.04172 * 292.02614 * 17 15 14 19 19 C 1.51099 * 104.72949 * 217.33769 * 18 17 15 20 20 C 1.30528 * 111.10494 * 16.43523 * 19 18 17 21 21 C 1.51104 * 111.10390 * 359.97438 * 20 19 18 22 22 C 1.38925 * 119.99714 * 0.25454 * 13 12 11 23 23 C 1.38001 * 119.99704 * 359.97438 * 22 13 12 24 24 H 0.97007 * 119.99694 * 0.02562 * 1 2 3 25 25 H 1.07997 * 120.00223 * 0.02562 * 11 10 9 26 26 H 1.07996 * 119.99725 * 179.77749 * 12 11 10 27 27 H 0.96998 * 119.99783 * 145.28771 * 14 13 12 28 28 H 1.09001 * 110.91721 * 56.04161 * 17 15 14 29 29 H 1.09007 * 110.38229 * 336.14986 * 18 17 15 30 30 H 1.08999 * 110.38562 * 98.52081 * 18 17 15 31 31 H 1.08001 * 124.44764 * 196.46213 * 19 18 17 32 32 H 1.07998 * 124.44599 * 180.02562 * 20 19 18 33 33 H 1.08998 * 110.38734 * 224.75522 * 21 20 19 34 34 H 1.09000 * 110.47977 * 102.42081 * 21 20 19 35 35 H 1.07997 * 120.00181 * 180.02562 * 22 13 12 36 36 H 1.08002 * 119.99809 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 2.4973 2.0463 -1.4001 5 1 1.4473 2.6527 0.6999 6 1 3.5473 1.4401 0.7000 7 6 2.0088 -1.2007 0.0005 8 1 1.4688 -2.1360 0.0005 9 8 3.3570 -1.2007 0.0000 10 6 3.9733 -2.4053 -0.1124 11 6 5.3550 -2.4919 0.0022 12 6 5.9819 -3.7155 -0.1172 13 6 5.2303 -4.8621 -0.3417 14 7 5.8658 -6.1040 -0.4580 15 6 7.0799 -6.1880 -1.0371 16 8 7.5787 -5.2062 -1.5454 17 6 7.8178 -7.5019 -1.0530 18 6 8.2573 -7.9090 0.3726 19 6 9.6149 -8.5464 0.1887 20 6 10.1198 -8.2488 -0.9777 21 6 9.1827 -7.3639 -1.7663 22 6 3.8481 -4.7761 -0.4512 23 6 3.2217 -3.5518 -0.3364 24 1 -0.4850 0.8401 -0.0004 25 1 5.9389 -1.6012 0.1812 26 1 7.0564 -3.7823 -0.0317 27 1 5.4323 -6.9040 -0.1220 28 1 7.2128 -8.2824 -1.5144 29 1 8.3342 -7.0295 1.0119 30 1 7.5550 -8.6270 0.7960 31 1 10.1033 -9.1671 0.9254 32 1 11.0806 -8.5909 -1.3327 33 1 9.1099 -7.7111 -2.7970 34 1 9.5220 -6.3284 -1.7383 35 1 3.2637 -5.6674 -0.6253 36 1 2.1471 -3.4850 -0.4211 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000077733998.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:33 Heat of formation + Delta-G solvation = -16.154825 kcal Electronic energy + Delta-G solvation = -19776.228353 eV Core-core repulsion = 16612.532442 eV Total energy + Delta-G solvation = -3163.695910 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.57263 -39.11080 -37.92968 -36.48498 -34.05828 -32.34069 -30.33114 -30.14931 -28.45071 -27.82737 -25.26167 -23.01946 -22.34648 -20.95828 -19.80956 -19.05339 -17.94788 -17.58356 -17.33980 -16.65770 -16.20642 -15.23517 -14.71717 -14.42772 -13.98104 -13.72019 -13.63826 -13.08870 -12.85560 -12.75331 -12.43613 -12.31126 -12.28192 -12.01981 -11.86820 -11.61001 -11.48779 -11.38400 -10.94629 -10.75343 -10.17817 -9.81751 -9.65317 -9.31621 -9.16747 -8.78231 -8.31444 -7.07067 -6.42714 -4.08384 1.95557 1.97895 2.08959 2.77832 3.21642 3.22794 3.27218 3.41640 4.20598 4.23938 4.32955 4.48042 4.67437 4.88616 4.91909 5.00030 5.08310 5.29551 5.36504 5.47222 5.50466 5.59663 5.67266 5.72427 5.92159 6.04765 6.10481 6.18157 6.23563 6.58284 6.64790 6.73135 6.91122 7.06215 7.21517 7.55934 7.62825 7.77066 8.01176 8.29963 8.92745 9.55259 10.64879 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.050602 B = 0.003301 C = 0.003192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 553.207708 B = 8479.245648 C = 8770.840166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.389 4.389 8 H 0.106 0.894 9 O -0.216 6.216 10 C 0.152 3.848 11 C -0.177 4.177 12 C -0.069 4.069 13 C 0.045 3.955 14 N -0.661 5.661 15 C 0.515 3.485 16 O -0.524 6.524 17 C -0.115 4.115 18 C -0.089 4.089 19 C -0.172 4.172 20 C -0.160 4.160 21 C -0.089 4.089 22 C -0.092 4.092 23 C -0.206 4.206 24 H 0.279 0.721 25 H 0.121 0.879 26 H 0.124 0.876 27 H 0.403 0.597 28 H 0.105 0.895 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.074 0.926 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.730 -16.927 0.258 22.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.465 4.465 8 H 0.123 0.877 9 O -0.121 6.121 10 C 0.100 3.900 11 C -0.197 4.197 12 C -0.089 4.089 13 C -0.047 4.047 14 N -0.305 5.305 15 C 0.302 3.698 16 O -0.400 6.400 17 C -0.137 4.137 18 C -0.126 4.126 19 C -0.189 4.189 20 C -0.178 4.178 21 C -0.126 4.126 22 C -0.112 4.112 23 C -0.225 4.225 24 H 0.090 0.910 25 H 0.139 0.861 26 H 0.142 0.858 27 H 0.237 0.763 28 H 0.123 0.877 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.093 0.907 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 14.981 -15.857 -0.077 21.815 hybrid contribution -0.169 0.128 0.105 0.237 sum 14.813 -15.729 0.028 21.606 Atomic orbital electron populations 1.69656 1.05572 1.28517 1.48005 1.24469 0.95033 0.98879 0.95633 0.86176 0.80357 0.81364 0.79012 1.19876 1.20783 1.18281 1.20756 0.76920 0.96608 1.52170 0.87654 1.83598 1.22563 1.25592 1.80335 1.19151 0.91575 0.85669 0.93636 1.20116 0.91829 0.97717 1.10001 1.20561 0.99218 0.90816 0.98340 1.17306 0.91422 0.85037 1.10972 1.43272 1.18949 1.08999 1.59281 1.20416 0.81405 0.90430 0.77547 1.90713 1.66842 1.38289 1.44117 1.22160 0.97518 0.95540 0.98448 1.21314 0.95536 1.00585 0.95201 1.23202 0.97095 1.00681 0.97969 1.23326 0.99643 0.98391 0.96479 1.21300 0.91284 1.01275 0.98759 1.20545 0.92243 0.97516 1.00886 1.21108 1.01203 0.91555 1.08660 0.91043 0.86109 0.85834 0.76252 0.87732 0.90086 0.90326 0.85594 0.85603 0.90706 0.88541 0.86852 0.84462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.32 13.96 55.48 0.77 -24.54 16 2 C 0.06 1.77 5.49 -17.52 -0.10 1.67 16 3 Si 0.91 21.75 28.62 -169.99 -4.86 16.89 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.26 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.39 -10.91 9.90 30.88 0.31 -10.60 16 8 H 0.11 2.99 5.52 -52.49 -0.29 2.70 16 9 O -0.22 -5.71 8.58 0.01 0.00 -5.71 16 10 C 0.15 3.53 6.65 -39.08 -0.26 3.27 16 11 C -0.18 -3.66 9.99 -39.42 -0.39 -4.05 16 12 C -0.07 -1.30 8.64 -39.41 -0.34 -1.64 16 13 C 0.04 0.77 6.25 -83.62 -0.52 0.25 16 14 N -0.66 -8.56 5.34 -9.82 -0.05 -8.61 16 15 C 0.52 6.89 6.79 -10.99 -0.07 6.82 16 16 O -0.52 -9.16 13.29 5.55 0.07 -9.08 16 17 C -0.12 -1.08 3.55 -90.06 -0.32 -1.40 16 18 C -0.09 -0.72 6.37 -26.83 -0.17 -0.89 16 19 C -0.17 -1.31 10.77 -35.70 -0.38 -1.70 16 20 C -0.16 -1.29 10.78 -35.70 -0.38 -1.68 16 21 C -0.09 -0.86 6.18 -26.83 -0.17 -1.02 16 22 C -0.09 -1.61 9.96 -39.41 -0.39 -2.01 16 23 C -0.21 -4.36 9.13 -39.42 -0.36 -4.72 16 24 H 0.28 7.43 8.31 -40.82 -0.34 7.09 16 25 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 26 H 0.12 2.25 6.52 -52.49 -0.34 1.90 16 27 H 0.40 3.75 8.82 -40.82 -0.36 3.39 16 28 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.75 7.88 -51.93 -0.41 0.34 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 32 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 1.14 6.95 -51.93 -0.36 0.78 16 35 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 36 H 0.14 3.02 5.70 -52.49 -0.30 2.72 16 LS Contribution 307.93 15.07 4.64 4.64 Total: -1.00 -31.60 307.93 -7.14 -38.74 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -4.16 Total: 5.39 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -3.56 Total: -17.71 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.72 Total: -33.16 kcal Atomic # 8 Polarization: -14.87 SS G_CDS: 0.07 Total: -14.80 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.86 Total: 16.89 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.60 -7.14 -38.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000077733998.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.585 kcal (2) G-P(sol) polarization free energy of solvation -31.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds