Wall clock time and date at job start Mon Mar 30 2020 01:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47316 * 2 1 4 4 C 1.53002 * 109.47249 * 119.99596 * 2 1 3 5 5 H 1.09007 * 109.47063 * 59.99997 * 4 2 1 6 6 C 1.47194 * 109.47502 * 179.97438 * 4 2 1 7 7 N 3.43555 * 155.17256 * 119.99605 * 2 1 3 8 8 O 1.45197 * 109.47341 * 300.00736 * 4 2 1 9 9 C 1.34701 * 117.00250 * 150.00002 * 8 4 2 10 10 O 1.21459 * 120.00176 * 359.97438 * 9 8 4 11 11 C 1.47774 * 120.00002 * 179.97438 * 9 8 4 12 12 C 1.39969 * 120.02999 * 0.27322 * 11 9 8 13 13 C 1.38315 * 120.35508 * 180.27271 * 12 11 9 14 14 C 1.37764 * 120.41428 * 359.44717 * 13 12 11 15 15 C 1.40752 * 120.05057 * 0.27893 * 14 13 12 16 16 C 1.41435 * 120.17319 * 179.97438 * 15 14 13 17 17 H 1.08004 * 119.99991 * 334.94416 * 16 15 14 18 18 C 1.39942 * 120.00025 * 154.95189 * 16 15 14 19 19 N 1.30824 * 119.99558 * 342.58077 * 18 16 15 20 20 Si 1.86802 * 120.00211 * 162.58605 * 18 16 15 21 21 H 1.48496 * 109.47224 * 89.99341 * 20 18 16 22 22 H 1.48493 * 109.47202 * 209.99864 * 20 18 16 23 23 H 1.48497 * 109.46810 * 329.99641 * 20 18 16 24 24 C 1.39044 * 120.03245 * 179.97438 * 11 9 8 25 25 H 1.09000 * 109.47243 * 300.00144 * 1 2 3 26 26 H 1.08992 * 109.46801 * 60.00135 * 1 2 3 27 27 H 1.09001 * 109.46676 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47243 * 239.99856 * 2 1 3 29 29 H 1.08996 * 109.47755 * 179.97438 * 3 2 1 30 30 H 1.09007 * 109.46963 * 300.00164 * 3 2 1 31 31 H 1.09000 * 109.47083 * 59.99757 * 3 2 1 32 32 H 1.08005 * 119.82459 * 0.02562 * 12 11 9 33 33 H 1.08004 * 119.79155 * 179.72259 * 13 12 11 34 34 H 1.08002 * 119.97475 * 180.25029 * 14 13 12 35 35 H 0.97003 * 119.99685 * 180.02562 * 19 18 16 36 36 H 1.08004 * 120.20525 * 359.97438 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2494 6 6 3.5120 -0.7217 1.2490 7 7 4.6480 -0.7212 1.2493 8 8 1.5560 -0.0368 2.4348 9 6 1.3522 -0.7879 3.5342 10 8 1.5723 -1.9819 3.5034 11 6 0.8607 -0.1591 4.7780 12 6 0.6013 1.2159 4.8126 13 6 0.1465 1.8124 5.9747 14 6 -0.0673 1.0587 7.1079 15 6 0.1825 -0.3263 7.0908 16 6 -0.0356 -1.1025 8.2529 17 1 0.0048 -0.6387 9.2274 18 6 -0.3035 -2.4713 8.1400 19 7 -0.6879 -2.9701 6.9933 20 14 -0.1125 -3.5862 9.6266 21 1 -1.3982 -3.6486 10.3671 22 1 0.2666 -4.9498 9.1772 23 1 0.9460 -3.0465 10.5173 24 6 0.6496 -0.9339 5.9131 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 0.7609 1.8151 3.9283 33 1 -0.0465 2.8749 5.9925 34 1 -0.4264 1.5311 8.0103 35 1 -0.8740 -3.9189 6.9151 36 1 0.8433 -1.9961 5.8897 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080389299.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:21 Heat of formation + Delta-G solvation = -66.379294 kcal Electronic energy + Delta-G solvation = -20279.203269 eV Core-core repulsion = 17113.329463 eV Total energy + Delta-G solvation = -3165.873807 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.80501 -39.48231 -38.53136 -37.22768 -35.84836 -35.55782 -32.23793 -31.36270 -29.14121 -28.01303 -27.25060 -25.06626 -22.85998 -21.82897 -21.71677 -19.83752 -19.45843 -18.20042 -17.73684 -16.86000 -16.52664 -16.32029 -15.88207 -15.55422 -15.15853 -15.01304 -14.66484 -14.49256 -14.31881 -13.98529 -13.63195 -13.50979 -13.26127 -12.97673 -12.82759 -12.79297 -12.59262 -12.34698 -12.22435 -12.12218 -11.96220 -11.83961 -11.78412 -11.54626 -11.31727 -11.07738 -9.61971 -9.43037 -8.68484 -6.39260 0.09022 0.91902 0.97865 1.38272 1.43394 1.44979 1.53070 1.73527 1.98152 2.19304 2.56320 2.73918 3.51862 3.63645 3.73518 3.86446 4.18388 4.33477 4.44347 4.59470 4.64873 4.82084 4.91390 4.96159 5.03178 5.05903 5.10590 5.13359 5.21449 5.28301 5.42998 5.44865 5.52067 5.81001 5.89777 6.01620 6.15984 6.23913 6.53157 6.70763 6.86658 6.88896 8.29169 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.023483 B = 0.004722 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.079461 B = 5928.099085 C = 6410.927740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.073 4.073 3 C -0.152 4.152 4 C 0.181 3.819 5 H 0.131 0.869 6 C 0.211 3.789 7 N -0.442 5.442 8 O -0.319 6.319 9 C 0.517 3.483 10 O -0.536 6.536 11 C -0.128 4.128 12 C -0.176 4.176 13 C -0.100 4.100 14 C -0.202 4.202 15 C 0.066 3.934 16 C -0.496 4.496 17 H 0.086 0.914 18 C 0.033 3.967 19 N -0.825 5.825 20 Si 0.980 3.020 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.257 1.257 24 C -0.122 4.122 25 H 0.054 0.946 26 H 0.090 0.910 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.114 0.886 35 H 0.288 0.712 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 5.665 -11.554 12.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.093 4.093 3 C -0.209 4.209 4 C 0.122 3.878 5 H 0.149 0.851 6 C -0.107 4.107 7 N -0.121 5.121 8 O -0.234 6.234 9 C 0.364 3.636 10 O -0.427 6.427 11 C -0.129 4.129 12 C -0.196 4.196 13 C -0.117 4.117 14 C -0.222 4.222 15 C 0.063 3.937 16 C -0.525 4.525 17 H 0.104 0.896 18 C -0.182 4.182 19 N -0.451 5.451 20 Si 0.800 3.200 21 H -0.181 1.181 22 H -0.198 1.198 23 H -0.181 1.181 24 C -0.142 4.142 25 H 0.073 0.927 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.142 0.858 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.156 0.844 33 H 0.159 0.841 34 H 0.132 0.868 35 H 0.099 0.901 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.786 5.106 -11.695 12.785 hybrid contribution -0.178 -1.060 0.811 1.346 sum 0.608 4.046 -10.884 11.628 Atomic orbital electron populations 1.21850 0.92080 1.03038 1.03649 1.21405 0.98239 0.97335 0.92281 1.21892 1.00053 0.95054 1.03888 1.20607 0.79462 1.01529 0.86190 0.85126 1.29733 0.95633 0.92134 0.93243 1.81151 1.13830 1.09612 1.07493 1.86799 1.76247 1.40850 1.19529 1.21804 0.72987 0.84738 0.84047 1.90770 1.50108 1.17370 1.84446 1.19015 1.08057 0.95598 0.90270 1.20997 1.07033 0.92103 0.99444 1.20977 0.98704 0.99800 0.92263 1.21525 1.07381 0.94133 0.99175 1.17878 0.90014 0.92900 0.92859 1.19852 1.44427 0.93901 0.94318 0.89616 1.26789 0.91237 1.00068 1.00146 1.69847 1.31572 1.15796 1.27843 0.85231 0.80029 0.76867 0.77848 1.18136 1.19751 1.18056 1.21470 1.00632 0.99337 0.92754 0.92718 0.89161 0.91961 0.85762 0.94089 0.89330 0.92034 0.84421 0.84095 0.86823 0.90121 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.05 71.98 0.65 -1.63 16 2 C -0.07 -1.21 2.79 -10.79 -0.03 -1.24 16 3 C -0.15 -2.51 8.80 71.98 0.63 -1.88 16 4 C 0.18 4.59 2.15 28.79 0.06 4.65 16 5 H 0.13 3.28 7.16 -2.38 -0.02 3.26 16 6 C 0.21 6.27 13.73 89.44 1.23 7.50 16 7 N -0.44 -14.92 18.54 20.00 0.37 -14.55 16 8 O -0.32 -10.20 7.74 -56.10 -0.43 -10.64 16 9 C 0.52 21.51 7.85 70.34 0.55 22.06 16 10 O -0.54 -25.01 15.59 19.97 0.31 -24.70 16 11 C -0.13 -5.87 5.87 -20.14 -0.12 -5.99 16 12 C -0.18 -6.92 9.62 22.71 0.22 -6.70 16 13 C -0.10 -3.82 10.01 22.18 0.22 -3.60 16 14 C -0.20 -9.06 9.78 22.77 0.22 -8.83 16 15 C 0.07 3.43 5.57 -21.32 -0.12 3.31 16 16 C -0.50 -25.98 9.05 23.47 0.21 -25.77 16 17 H 0.09 4.23 7.90 -2.91 -0.02 4.21 16 18 C 0.03 1.65 5.14 85.26 0.44 2.09 16 19 N -0.82 -43.92 10.97 21.83 0.24 -43.68 16 20 Si 0.98 38.24 29.59 68.60 2.03 40.27 16 21 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 22 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 24 C -0.12 -6.48 8.24 23.02 0.19 -6.29 16 25 H 0.05 1.05 7.68 -2.39 -0.02 1.03 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.04 0.77 7.23 -2.39 -0.02 0.76 16 30 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 31 H 0.06 1.17 7.68 -2.39 -0.02 1.15 16 32 H 0.14 4.46 7.59 -2.91 -0.02 4.44 16 33 H 0.14 4.20 8.06 -2.91 -0.02 4.18 16 34 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 35 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 36 H 0.11 6.17 5.76 -2.91 -0.02 6.15 16 Total: -1.00 -63.81 319.37 7.98 -55.83 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 1.09 Total: 19.81 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 4.36 Total: -22.34 kcal Atomic # 7 Polarization: -58.85 SS G_CDS: 0.61 Total: -58.24 kcal Atomic # 8 Polarization: -35.21 SS G_CDS: -0.12 Total: -35.33 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -63.81 7.98 -55.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080389299.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.548 kcal (2) G-P(sol) polarization free energy of solvation -63.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds