Wall clock time and date at job start Mon Mar 30 2020 01:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99701 * 2 1 4 4 H 1.48494 * 109.47307 * 269.99795 * 3 2 1 5 5 H 1.48504 * 109.46906 * 29.99946 * 3 2 1 6 6 H 1.48503 * 109.47030 * 149.99904 * 3 2 1 7 7 C 1.37876 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99435 * 173.45618 * 7 2 1 9 9 C 1.50697 * 120.00224 * 353.45930 * 7 2 1 10 10 C 1.52999 * 115.55004 * 85.30222 * 9 7 2 11 11 N 1.46899 * 109.47241 * 65.04804 * 10 9 7 12 12 C 1.46899 * 110.99722 * 185.42688 * 11 10 9 13 13 H 1.08993 * 109.38587 * 35.21875 * 12 11 10 14 14 C 1.52598 * 109.38171 * 155.00468 * 12 11 10 15 15 C 1.52592 * 110.64192 * 190.14598 * 14 12 11 16 16 C 1.53037 * 109.98149 * 290.01314 * 15 14 12 17 17 S 1.81665 * 109.00410 * 63.64860 * 16 15 14 18 18 O 1.42100 * 108.66358 * 60.02801 * 17 16 15 19 19 O 1.42097 * 108.66677 * 191.37402 * 17 16 15 20 20 C 1.53037 * 109.38439 * 275.52326 * 12 11 10 21 21 C 1.53002 * 117.49762 * 230.97227 * 9 7 2 22 22 C 1.52999 * 117.49884 * 299.63023 * 9 7 2 23 23 H 0.97001 * 120.00709 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46905 * 305.04742 * 10 9 7 25 25 H 1.08998 * 109.47201 * 185.05150 * 10 9 7 26 26 H 1.00898 * 110.99944 * 61.47551 * 11 10 9 27 27 H 1.09000 * 109.23944 * 310.44110 * 14 12 11 28 28 H 1.08999 * 109.24216 * 69.88242 * 14 12 11 29 29 H 1.08996 * 109.38464 * 50.16399 * 15 14 12 30 30 H 1.08990 * 109.38527 * 169.85347 * 15 14 12 31 31 H 1.09005 * 109.54901 * 183.50603 * 16 15 14 32 32 H 1.09000 * 109.54835 * 303.68930 * 16 15 14 33 33 H 1.08995 * 109.55358 * 296.05070 * 20 12 11 34 34 H 1.08997 * 109.54747 * 56.34416 * 20 12 11 35 35 H 1.08999 * 117.49679 * 215.00421 * 21 9 7 36 36 H 1.08998 * 117.49969 * 0.02562 * 21 9 7 37 37 H 1.09006 * 117.49665 * 359.97438 * 22 9 7 38 38 H 1.09001 * 117.50078 * 144.97466 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0792 -1.1970 -0.1061 9 6 1.2584 -2.4948 0.1498 10 6 0.6984 -3.0867 -1.1452 11 7 1.8078 -3.4588 -2.0334 12 6 1.3080 -3.9117 -3.3384 13 1 0.4204 -3.3380 -3.6048 14 6 2.3866 -3.6964 -4.3962 15 6 1.8199 -3.9193 -5.7954 16 6 1.5182 -5.4047 -6.0068 17 16 0.2237 -5.9173 -4.8399 18 8 -0.9422 -5.1429 -5.0852 19 8 0.1343 -7.3354 -4.8541 20 6 0.9452 -5.3962 -3.2561 21 6 1.7504 -3.4728 1.2187 22 6 0.4459 -2.7003 1.4298 23 1 -0.4851 0.8400 0.0004 24 1 0.0690 -2.3471 -1.6403 25 1 0.1057 -3.9717 -0.9137 26 1 2.3926 -4.1615 -1.6065 27 1 2.7657 -2.6772 -4.3204 28 1 3.2034 -4.3972 -4.2242 29 1 0.9014 -3.3438 -5.9096 30 1 2.5469 -3.5886 -6.5370 31 1 1.1728 -5.5649 -7.0282 32 1 2.4215 -5.9889 -5.8316 33 1 1.8429 -5.9805 -3.0544 34 1 0.2204 -5.5507 -2.4567 35 1 1.6752 -4.5378 0.9993 36 1 2.6134 -3.1751 1.8142 37 1 0.4513 -1.8948 2.1641 38 1 -0.4879 -3.2569 1.3493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:44 Heat of formation + Delta-G solvation = -50.741291 kcal Electronic energy + Delta-G solvation = -19788.778444 eV Core-core repulsion = 16759.026703 eV Total energy + Delta-G solvation = -3029.751741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.25517 -37.02893 -36.40993 -36.06163 -33.77516 -31.85476 -29.90597 -27.74510 -25.70282 -24.53591 -22.48519 -21.15406 -20.64022 -19.05513 -18.84913 -16.87194 -16.63857 -16.08964 -15.73515 -15.14829 -14.67300 -14.52909 -14.30647 -13.96440 -13.47288 -13.36458 -13.00057 -12.87714 -12.19042 -12.06180 -11.99500 -11.68829 -11.52517 -11.37742 -11.30002 -10.93911 -10.89780 -10.77706 -10.65842 -10.46306 -10.27543 -10.16868 -9.47137 -8.82967 -8.39272 -8.09861 -7.73303 -5.97104 -3.99156 -0.03992 2.59866 3.33003 3.40019 3.43178 3.57809 3.85015 4.34850 4.42248 4.46344 4.61052 4.69117 4.77930 4.93787 5.26928 5.32747 5.33523 5.40344 5.49865 5.58931 5.70944 5.83536 6.09054 6.15893 6.24890 6.33975 6.45154 6.56774 6.70413 6.81854 7.09976 7.44192 7.51642 7.79926 7.95500 8.01654 8.52506 9.00011 9.64336 11.12756 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024971 B = 0.005071 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.040290 B = 5520.391651 C = 6036.573831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.472 4.472 8 H 0.059 0.941 9 C 0.052 3.948 10 C 0.102 3.898 11 N -0.649 5.649 12 C 0.101 3.899 13 H 0.095 0.905 14 C -0.130 4.130 15 C -0.109 4.109 16 C -0.602 4.602 17 S 2.415 3.585 18 O -0.937 6.937 19 O -0.953 6.953 20 C -0.634 4.634 21 C -0.216 4.216 22 C -0.158 4.158 23 H 0.258 0.742 24 H 0.081 0.919 25 H -0.003 1.003 26 H 0.335 0.665 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.059 0.941 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.867 -9.797 -10.126 14.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.509 4.509 8 H 0.078 0.922 9 C 0.051 3.949 10 C -0.027 4.027 11 N -0.278 5.278 12 C -0.012 4.012 13 H 0.113 0.887 14 C -0.168 4.168 15 C -0.148 4.148 16 C -0.731 4.731 17 S 2.597 3.403 18 O -0.934 6.934 19 O -0.950 6.950 20 C -0.766 4.766 21 C -0.254 4.254 22 C -0.196 4.196 23 H 0.068 0.932 24 H 0.099 0.901 25 H 0.015 0.985 26 H 0.153 0.847 27 H 0.117 0.883 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.150 0.850 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.990 -9.439 -10.495 14.428 hybrid contribution 0.752 0.202 0.483 0.916 sum 3.742 -9.236 -10.012 14.126 Atomic orbital electron populations 1.69998 1.05821 1.26276 1.50127 1.24944 0.94748 0.98752 0.95004 0.86665 0.79887 0.83779 0.78017 1.20767 1.21471 1.20036 1.20279 0.92815 0.88336 1.49519 0.92247 1.18817 0.97199 0.93774 0.85123 1.21689 0.90651 0.96033 0.94310 1.60385 1.21447 1.43690 1.02308 1.21423 0.98514 0.87525 0.93698 0.88660 1.21741 0.98273 1.05340 0.91449 1.21293 1.03723 0.91039 0.98769 1.30227 1.18854 1.07295 1.16772 1.08108 0.77620 0.75177 0.79388 1.93595 1.43564 1.72189 1.84032 1.93568 1.86647 1.28539 1.86260 1.31071 1.13785 1.09672 1.22086 1.23001 0.98577 0.95351 1.08426 1.22529 0.92002 1.01182 1.03935 0.93229 0.90076 0.98482 0.84744 0.88272 0.91176 0.89665 0.89504 0.85195 0.85080 0.84949 0.84950 0.92250 0.90483 0.90009 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.70 12.93 55.43 0.72 -23.98 16 2 C 0.07 1.81 5.39 -17.82 -0.10 1.72 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.47 -12.41 8.74 -34.44 -0.30 -12.71 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 9 C 0.05 1.21 1.55 -155.66 -0.24 0.97 16 10 C 0.10 2.13 5.33 -3.83 -0.02 2.11 16 11 N -0.65 -11.19 6.11 -106.93 -0.65 -11.85 16 12 C 0.10 1.37 2.29 -67.90 -0.16 1.22 16 13 H 0.10 1.43 7.57 -51.93 -0.39 1.04 16 14 C -0.13 -1.40 5.23 -27.15 -0.14 -1.55 16 15 C -0.11 -0.97 5.73 -26.92 -0.15 -1.12 16 16 C -0.60 -4.74 6.35 37.18 0.24 -4.51 16 17 S 2.41 27.21 5.31 -107.50 -0.57 26.64 16 18 O -0.94 -14.14 17.93 -57.81 -1.04 -15.17 16 19 O -0.95 -13.60 18.10 -57.81 -1.05 -14.64 16 20 C -0.63 -7.10 5.60 37.18 0.21 -6.89 16 21 C -0.22 -4.52 9.96 -26.69 -0.27 -4.79 16 22 C -0.16 -3.64 9.43 -26.69 -0.25 -3.89 16 23 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 24 H 0.08 1.93 7.92 -51.93 -0.41 1.52 16 25 H 0.00 -0.06 7.42 -51.93 -0.39 -0.44 16 26 H 0.33 5.27 8.54 -39.29 -0.34 4.93 16 27 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.07 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.08 0.81 8.01 -51.93 -0.42 0.39 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.13 0.83 8.14 -51.92 -0.42 0.41 16 32 H 0.13 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.13 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.13 1.57 7.43 -51.93 -0.39 1.18 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 321.23 15.07 4.84 4.84 Total: -1.00 -32.86 321.23 -10.05 -42.92 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.10 Total: 4.77 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: -1.18 Total: -29.44 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: 0.06 Total: -35.83 kcal Atomic # 8 Polarization: -27.73 SS G_CDS: -2.08 Total: -29.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Atomic # 16 Polarization: 27.21 SS G_CDS: -0.57 Total: 26.64 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.86 -10.05 -42.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.825 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds