Wall clock time and date at job start Mon Mar 30 2020 01:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99701 * 2 1 4 4 H 1.48494 * 109.47307 * 269.99795 * 3 2 1 5 5 H 1.48504 * 109.46906 * 29.99946 * 3 2 1 6 6 H 1.48503 * 109.47030 * 149.99904 * 3 2 1 7 7 C 1.37876 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99435 * 173.45618 * 7 2 1 9 9 C 1.50697 * 120.00224 * 353.45930 * 7 2 1 10 10 C 1.52999 * 115.55004 * 85.30222 * 9 7 2 11 11 N 1.46899 * 109.47241 * 65.04804 * 10 9 7 12 12 C 1.46899 * 110.99722 * 185.42688 * 11 10 9 13 13 H 1.08993 * 109.38587 * 35.21875 * 12 11 10 14 14 C 1.52598 * 109.38171 * 155.00468 * 12 11 10 15 15 C 1.52592 * 110.64192 * 190.14598 * 14 12 11 16 16 C 1.53037 * 109.98149 * 290.01314 * 15 14 12 17 17 S 1.81665 * 109.00410 * 63.64860 * 16 15 14 18 18 O 1.42100 * 108.66358 * 60.02801 * 17 16 15 19 19 O 1.42097 * 108.66677 * 191.37402 * 17 16 15 20 20 C 1.53037 * 109.38439 * 275.52326 * 12 11 10 21 21 C 1.53002 * 117.49762 * 230.97227 * 9 7 2 22 22 C 1.52999 * 117.49884 * 299.63023 * 9 7 2 23 23 H 0.97001 * 120.00709 * 359.97438 * 1 2 3 24 24 H 1.09005 * 109.46905 * 305.04742 * 10 9 7 25 25 H 1.08998 * 109.47201 * 185.05150 * 10 9 7 26 26 H 1.00898 * 110.99944 * 61.47551 * 11 10 9 27 27 H 1.09000 * 109.23944 * 310.44110 * 14 12 11 28 28 H 1.08999 * 109.24216 * 69.88242 * 14 12 11 29 29 H 1.08996 * 109.38464 * 50.16399 * 15 14 12 30 30 H 1.08990 * 109.38527 * 169.85347 * 15 14 12 31 31 H 1.09005 * 109.54901 * 183.50603 * 16 15 14 32 32 H 1.09000 * 109.54835 * 303.68930 * 16 15 14 33 33 H 1.08995 * 109.55358 * 296.05070 * 20 12 11 34 34 H 1.08997 * 109.54747 * 56.34416 * 20 12 11 35 35 H 1.08999 * 117.49679 * 215.00421 * 21 9 7 36 36 H 1.08998 * 117.49969 * 0.02562 * 21 9 7 37 37 H 1.09006 * 117.49665 * 359.97438 * 22 9 7 38 38 H 1.09001 * 117.50078 * 144.97466 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0792 -1.1970 -0.1061 9 6 1.2584 -2.4948 0.1498 10 6 0.6984 -3.0867 -1.1452 11 7 1.8078 -3.4588 -2.0334 12 6 1.3080 -3.9117 -3.3384 13 1 0.4204 -3.3380 -3.6048 14 6 2.3866 -3.6964 -4.3962 15 6 1.8199 -3.9193 -5.7954 16 6 1.5182 -5.4047 -6.0068 17 16 0.2237 -5.9173 -4.8399 18 8 -0.9422 -5.1429 -5.0852 19 8 0.1343 -7.3354 -4.8541 20 6 0.9452 -5.3962 -3.2561 21 6 1.7504 -3.4728 1.2187 22 6 0.4459 -2.7003 1.4298 23 1 -0.4851 0.8400 0.0004 24 1 0.0690 -2.3471 -1.6403 25 1 0.1057 -3.9717 -0.9137 26 1 2.3926 -4.1615 -1.6065 27 1 2.7657 -2.6772 -4.3204 28 1 3.2034 -4.3972 -4.2242 29 1 0.9014 -3.3438 -5.9096 30 1 2.5469 -3.5886 -6.5370 31 1 1.1728 -5.5649 -7.0282 32 1 2.4215 -5.9889 -5.8316 33 1 1.8429 -5.9805 -3.0544 34 1 0.2204 -5.5507 -2.4567 35 1 1.6752 -4.5378 0.9993 36 1 2.6134 -3.1751 1.8142 37 1 0.4513 -1.8948 2.1641 38 1 -0.4879 -3.2569 1.3493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854398.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:44 Heat of formation + Delta-G solvation = -75.355407 kcal Electronic energy + Delta-G solvation = -19789.845792 eV Core-core repulsion = 16759.026703 eV Total energy + Delta-G solvation = -3030.819089 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.47621 -38.24822 -37.74467 -37.07945 -34.87854 -33.87309 -31.05234 -28.58463 -27.62050 -26.04496 -23.52913 -22.84455 -21.71776 -20.81911 -19.81146 -18.11863 -17.75809 -17.40245 -16.82487 -16.55216 -16.21335 -15.74028 -15.50827 -15.31115 -14.84408 -14.56951 -14.19036 -13.85686 -13.56075 -13.26536 -13.19986 -13.09137 -12.84984 -12.81115 -12.64732 -12.35650 -12.28853 -12.20940 -12.01115 -11.84238 -11.69169 -11.35894 -11.01773 -10.71732 -10.35796 -9.91697 -9.11144 -8.02156 -6.08688 -0.91302 1.44410 1.46215 1.54942 1.75812 2.49181 2.71610 2.97996 3.20845 3.28495 3.58719 3.62553 3.77924 3.84412 3.93985 4.16744 4.35097 4.40341 4.51499 4.58888 4.65774 4.71311 4.78135 4.82312 4.89429 4.99621 5.06382 5.12791 5.28714 5.33835 5.43233 5.63889 5.76019 5.89616 6.29040 6.50894 6.76433 6.95554 7.57073 9.06980 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.024971 B = 0.005071 C = 0.004637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.040290 B = 5520.391651 C = 6036.573831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.020 3.980 3 Si 0.945 3.055 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.478 4.478 8 H 0.052 0.948 9 C 0.025 3.975 10 C 0.116 3.884 11 N -0.658 5.658 12 C 0.096 3.904 13 H 0.069 0.931 14 C -0.127 4.127 15 C -0.111 4.111 16 C -0.573 4.573 17 S 2.417 3.583 18 O -0.986 6.986 19 O -0.985 6.985 20 C -0.631 4.631 21 C -0.185 4.185 22 C -0.172 4.172 23 H 0.255 0.745 24 H 0.041 0.959 25 H 0.007 0.993 26 H 0.346 0.654 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.155 0.845 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.121 0.879 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.278 -11.082 -11.477 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.179 4.179 3 Si 0.772 3.228 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.194 1.194 7 C -0.516 4.516 8 H 0.071 0.929 9 C 0.025 3.975 10 C -0.013 4.013 11 N -0.289 5.289 12 C -0.016 4.016 13 H 0.087 0.913 14 C -0.165 4.165 15 C -0.149 4.149 16 C -0.706 4.706 17 S 2.604 3.396 18 O -0.983 6.983 19 O -0.982 6.982 20 C -0.762 4.762 21 C -0.222 4.222 22 C -0.210 4.210 23 H 0.064 0.936 24 H 0.059 0.941 25 H 0.025 0.975 26 H 0.165 0.835 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.135 0.865 31 H 0.172 0.828 32 H 0.186 0.814 33 H 0.184 0.816 34 H 0.139 0.861 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.075 0.925 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.386 -10.748 -11.824 16.863 hybrid contribution 0.057 0.592 0.880 1.062 sum 5.443 -10.156 -10.945 15.892 Atomic orbital electron populations 1.70118 1.07050 1.26612 1.51630 1.25608 0.95422 1.01705 0.95174 0.85765 0.78825 0.80264 0.77965 1.20438 1.21671 1.19393 1.20546 0.92651 0.89840 1.48540 0.92943 1.18952 0.98047 0.94099 0.86449 1.21283 0.91292 0.95229 0.93495 1.60273 1.20524 1.45080 1.02982 1.21474 0.98761 0.88686 0.92659 0.91319 1.21726 0.97980 1.05282 0.91485 1.21332 1.03907 0.91554 0.98149 1.30019 1.17863 1.06782 1.15964 1.07803 0.78066 0.73942 0.79770 1.93535 1.47258 1.72782 1.84747 1.93525 1.87586 1.30285 1.86821 1.30980 1.15000 1.08155 1.22085 1.22983 0.96929 0.96443 1.05822 1.22452 0.93598 1.01471 1.03522 0.93598 0.94050 0.97468 0.83515 0.89930 0.88222 0.90978 0.86532 0.82753 0.81427 0.81587 0.86084 0.89125 0.90456 0.92546 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.61 12.93 21.45 0.28 -52.33 16 2 C 0.02 1.07 5.39 84.65 0.46 1.53 16 3 Si 0.95 43.47 29.54 68.60 2.03 45.49 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.48 -25.34 8.74 25.60 0.22 -25.12 16 8 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 9 C 0.03 1.19 1.55 -52.93 -0.08 1.11 16 10 C 0.12 4.94 5.33 86.30 0.46 5.40 16 11 N -0.66 -22.18 6.11 -492.21 -3.01 -25.19 16 12 C 0.10 2.53 2.29 44.79 0.10 2.63 16 13 H 0.07 2.15 7.57 -2.39 -0.02 2.14 16 14 C -0.13 -2.40 5.23 30.33 0.16 -2.24 16 15 C -0.11 -1.59 5.73 30.47 0.17 -1.41 16 16 C -0.57 -6.59 6.35 71.99 0.46 -6.13 16 17 S 2.42 51.23 5.31 -56.49 -0.30 50.94 16 18 O -0.99 -30.30 17.93 -127.40 -2.28 -32.58 16 19 O -0.99 -26.78 18.10 -127.40 -2.31 -29.09 16 20 C -0.63 -13.09 5.60 71.99 0.40 -12.68 16 21 C -0.18 -7.43 9.96 30.62 0.30 -7.13 16 22 C -0.17 -7.99 9.43 30.62 0.29 -7.70 16 23 H 0.26 14.19 8.31 -92.71 -0.77 13.41 16 24 H 0.04 2.06 7.92 -2.38 -0.02 2.04 16 25 H 0.01 0.29 7.42 -2.39 -0.02 0.27 16 26 H 0.35 10.14 8.54 -89.70 -0.77 9.38 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.10 1.31 8.09 -2.39 -0.02 1.29 16 29 H 0.07 1.26 8.01 -2.39 -0.02 1.24 16 30 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.15 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.17 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.17 2.25 8.14 -2.39 -0.02 2.23 16 34 H 0.12 2.81 7.43 -2.39 -0.02 2.79 16 35 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 37 H 0.06 2.86 8.14 -2.38 -0.02 2.84 16 38 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 Total: -1.00 -73.40 321.23 -2.37 -75.77 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.28 Total: 18.75 kcal Atomic # 6 Polarization: -54.70 SS G_CDS: 2.95 Total: -51.75 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -2.73 Total: -77.52 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -4.59 Total: -61.67 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 51.23 SS G_CDS: -0.30 Total: 50.94 kcal Total: -73.40 -2.37 -75.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854398.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.415 kcal (2) G-P(sol) polarization free energy of solvation -73.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds