Wall clock time and date at job start Mon Mar 30 2020 01:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86810 * 119.99957 * 2 1 4 4 H 1.48500 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46899 * 299.99995 * 3 2 1 6 6 H 1.48495 * 109.47098 * 59.99645 * 3 2 1 7 7 C 1.37874 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00091 * 175.03643 * 7 2 1 9 9 C 1.50704 * 119.99920 * 354.76892 * 7 2 1 10 10 C 1.52997 * 115.54596 * 279.47431 * 9 7 2 11 11 N 1.46903 * 109.46929 * 294.80334 * 10 9 7 12 12 C 1.46899 * 111.00226 * 185.34582 * 11 10 9 13 13 H 1.09005 * 109.38639 * 324.79446 * 12 11 10 14 14 C 1.52586 * 109.38909 * 205.00137 * 12 11 10 15 15 C 1.52585 * 110.64502 * 169.85457 * 14 12 11 16 16 C 1.53032 * 109.98644 * 69.98774 * 15 14 12 17 17 S 1.81673 * 108.99801 * 296.35326 * 16 15 14 18 18 O 1.42107 * 108.66001 * 168.62920 * 17 16 15 19 19 O 1.42095 * 108.66178 * 299.96273 * 17 16 15 20 20 C 1.53039 * 109.38555 * 84.47373 * 12 11 10 21 21 C 1.52995 * 117.50330 * 133.76252 * 9 7 2 22 22 C 1.53000 * 117.49809 * 65.13704 * 9 7 2 23 23 H 0.97003 * 120.00446 * 4.99925 * 1 2 3 24 24 H 1.09000 * 109.47950 * 54.80505 * 10 9 7 25 25 H 1.09004 * 109.47078 * 174.81317 * 10 9 7 26 26 H 1.00902 * 111.00088 * 61.39609 * 11 10 9 27 27 H 1.09000 * 109.24358 * 290.15524 * 14 12 11 28 28 H 1.09007 * 109.23932 * 49.55705 * 14 12 11 29 29 H 1.09006 * 109.38686 * 190.14726 * 15 14 12 30 30 H 1.09002 * 109.38415 * 309.82834 * 15 14 12 31 31 H 1.09001 * 109.55069 * 56.20507 * 16 15 14 32 32 H 1.09002 * 109.55185 * 176.40004 * 16 15 14 33 33 H 1.08997 * 109.55275 * 303.66433 * 20 12 11 34 34 H 1.09002 * 109.54799 * 63.95352 * 20 12 11 35 35 H 1.09005 * 117.49781 * 359.97438 * 21 9 7 36 36 H 1.08998 * 117.50155 * 145.01996 * 21 9 7 37 37 H 1.09000 * 117.49677 * 214.98251 * 22 9 7 38 38 H 1.09001 * 117.50031 * 0.02562 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0815 -1.1957 -0.0804 9 6 1.2558 -2.4964 0.1201 10 6 0.8392 -2.8900 1.5386 11 7 2.0382 -3.1427 2.3488 12 6 1.6772 -3.6458 3.6809 13 1 0.7535 -3.1693 4.0095 14 6 2.7949 -3.3175 4.6665 15 6 2.3493 -3.5990 6.0984 16 6 2.2209 -5.1079 6.3191 17 16 0.9130 -5.7547 5.2369 18 8 0.9750 -7.1744 5.2472 19 8 -0.3093 -5.1081 5.5643 20 6 1.4683 -5.1603 3.6125 21 6 1.6386 -3.6224 -0.8424 22 6 0.3145 -2.8777 -1.0242 23 1 -0.4851 0.8368 -0.0732 24 1 0.2624 -2.0805 1.9859 25 1 0.2294 -3.7928 1.5009 26 1 2.6092 -2.3137 2.4180 27 1 3.6682 -3.9275 4.4355 28 1 3.0583 -2.2639 4.5728 29 1 3.0852 -3.1931 6.7927 30 1 1.3848 -3.1238 6.2773 31 1 3.1667 -5.5935 6.0786 32 1 1.9648 -5.3037 7.3604 33 1 0.7123 -5.3908 2.8618 34 1 2.4073 -5.6464 3.3477 35 1 2.4318 -3.4210 -1.5625 36 1 1.5939 -4.6440 -0.4651 37 1 -0.6014 -3.4094 -0.7664 38 1 0.2370 -2.1868 -1.8637 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:46 Heat of formation + Delta-G solvation = -52.788383 kcal Electronic energy + Delta-G solvation = -19799.185297 eV Core-core repulsion = 16769.344787 eV Total energy + Delta-G solvation = -3029.840509 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.22286 -36.98032 -36.37570 -36.02811 -33.66629 -31.95983 -30.01328 -27.83965 -25.73386 -24.62222 -22.27581 -21.03418 -20.63235 -19.05035 -18.85840 -16.91295 -16.44534 -16.02231 -15.68177 -15.30302 -14.74725 -14.64205 -14.28937 -13.79432 -13.61724 -13.43520 -12.94048 -12.58849 -12.30157 -12.07395 -12.02884 -11.74635 -11.52363 -11.44343 -11.29455 -11.02047 -10.96065 -10.74376 -10.64991 -10.46057 -10.25026 -10.11547 -9.36337 -8.88175 -8.46335 -8.13204 -7.67973 -6.06157 -4.13776 0.00651 2.63387 3.22617 3.32371 3.35202 3.61584 3.86345 4.33686 4.36165 4.47858 4.63988 4.68936 4.81240 4.98222 5.21423 5.25866 5.32536 5.41076 5.57471 5.67349 5.69196 5.77793 6.04863 6.09553 6.13771 6.42420 6.52426 6.77636 6.79587 6.87309 7.16409 7.44330 7.53546 7.81798 7.85515 8.12146 8.45266 8.90180 9.52264 11.01231 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025141 B = 0.005110 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.458521 B = 5478.441347 C = 6050.513520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.069 3.931 3 Si 0.886 3.114 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.493 4.493 8 H 0.061 0.939 9 C 0.048 3.952 10 C 0.102 3.898 11 N -0.668 5.668 12 C 0.097 3.903 13 H 0.060 0.940 14 C -0.143 4.143 15 C -0.107 4.107 16 C -0.604 4.604 17 S 2.411 3.589 18 O -0.951 6.951 19 O -0.940 6.940 20 C -0.583 4.583 21 C -0.200 4.200 22 C -0.160 4.160 23 H 0.259 0.741 24 H 0.038 0.962 25 H 0.039 0.961 26 H 0.353 0.647 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.137 0.863 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.041 -7.452 11.447 14.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.134 4.134 3 Si 0.714 3.286 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.531 4.531 8 H 0.079 0.921 9 C 0.047 3.953 10 C -0.027 4.027 11 N -0.301 5.301 12 C -0.015 4.015 13 H 0.078 0.922 14 C -0.180 4.180 15 C -0.146 4.146 16 C -0.733 4.733 17 S 2.594 3.406 18 O -0.947 6.947 19 O -0.937 6.937 20 C -0.715 4.715 21 C -0.237 4.237 22 C -0.199 4.199 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.174 0.826 27 H 0.100 0.900 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.150 0.850 32 H 0.148 0.852 33 H 0.152 0.848 34 H 0.155 0.845 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.224 -8.451 11.481 14.869 hybrid contribution 0.713 2.069 0.048 2.189 sum 4.938 -6.382 11.529 14.072 Atomic orbital electron populations 1.70005 1.05854 1.26560 1.49124 1.25019 0.94778 0.98850 0.94753 0.86631 0.80283 0.84044 0.77622 1.19668 1.21079 1.21082 1.20501 0.92840 0.88719 1.51036 0.92127 1.18736 0.97834 0.92521 0.86205 1.21548 0.89509 0.97023 0.94636 1.60438 1.21074 1.38754 1.09863 1.21077 0.97789 0.90602 0.92072 0.92231 1.21916 0.99182 1.04272 0.92661 1.21249 1.04274 0.91129 0.97963 1.30234 1.19515 1.07475 1.16099 1.08131 0.77413 0.75504 0.79537 1.93579 1.87370 1.27453 1.86345 1.93586 1.40066 1.77245 1.82803 1.30334 1.13322 1.06979 1.20821 1.22842 0.99017 0.96024 1.05859 1.22538 0.91363 1.02299 1.03672 0.93077 0.94355 0.94212 0.82578 0.89987 0.89468 0.89533 0.89778 0.84956 0.85207 0.84796 0.84458 0.90911 0.91750 0.92253 0.90125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.15 12.85 55.43 0.71 -23.44 16 2 C 0.07 1.81 5.44 -17.82 -0.10 1.71 16 3 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.49 -12.69 8.31 -34.44 -0.29 -12.97 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.05 1.13 1.57 -155.66 -0.25 0.88 16 10 C 0.10 2.15 5.32 -3.82 -0.02 2.13 16 11 N -0.67 -11.63 6.27 -106.93 -0.67 -12.31 16 12 C 0.10 1.32 2.32 -67.91 -0.16 1.16 16 13 H 0.06 0.87 7.72 -51.93 -0.40 0.47 16 14 C -0.14 -1.45 5.02 -27.16 -0.14 -1.59 16 15 C -0.11 -0.91 5.73 -26.93 -0.15 -1.06 16 16 C -0.60 -4.73 6.35 37.17 0.24 -4.50 16 17 S 2.41 27.58 5.31 -107.50 -0.57 27.01 16 18 O -0.95 -13.73 18.10 -57.81 -1.05 -14.77 16 19 O -0.94 -14.20 17.93 -57.81 -1.04 -15.24 16 20 C -0.58 -7.01 5.85 37.18 0.22 -6.79 16 21 C -0.20 -4.35 9.96 -26.73 -0.27 -4.62 16 22 C -0.16 -3.76 9.39 -26.73 -0.25 -4.01 16 23 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 24 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.80 7.19 -51.93 -0.37 0.43 16 26 H 0.35 6.31 7.75 -39.29 -0.30 6.01 16 27 H 0.08 0.73 8.09 -51.93 -0.42 0.31 16 28 H 0.09 0.89 7.87 -51.92 -0.41 0.48 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.76 8.01 -51.93 -0.42 0.34 16 31 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.13 1.73 7.28 -51.93 -0.38 1.35 16 34 H 0.14 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.08 2.02 8.14 -51.93 -0.42 1.60 16 LS Contribution 319.93 15.07 4.82 4.82 Total: -1.00 -32.37 319.93 -10.03 -42.40 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.05 Total: 6.00 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: -1.16 Total: -29.66 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.04 Total: -35.74 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -2.08 Total: -30.01 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Atomic # 16 Polarization: 27.58 SS G_CDS: -0.57 Total: 27.01 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.37 -10.03 -42.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.390 kcal (2) G-P(sol) polarization free energy of solvation -32.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds