Wall clock time and date at job start Mon Mar 30 2020 01:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86810 * 119.99957 * 2 1 4 4 H 1.48500 * 109.47213 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46899 * 299.99995 * 3 2 1 6 6 H 1.48495 * 109.47098 * 59.99645 * 3 2 1 7 7 C 1.37874 * 120.00371 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00091 * 175.03643 * 7 2 1 9 9 C 1.50704 * 119.99920 * 354.76892 * 7 2 1 10 10 C 1.52997 * 115.54596 * 279.47431 * 9 7 2 11 11 N 1.46903 * 109.46929 * 294.80334 * 10 9 7 12 12 C 1.46899 * 111.00226 * 185.34582 * 11 10 9 13 13 H 1.09005 * 109.38639 * 324.79446 * 12 11 10 14 14 C 1.52586 * 109.38909 * 205.00137 * 12 11 10 15 15 C 1.52585 * 110.64502 * 169.85457 * 14 12 11 16 16 C 1.53032 * 109.98644 * 69.98774 * 15 14 12 17 17 S 1.81673 * 108.99801 * 296.35326 * 16 15 14 18 18 O 1.42107 * 108.66001 * 168.62920 * 17 16 15 19 19 O 1.42095 * 108.66178 * 299.96273 * 17 16 15 20 20 C 1.53039 * 109.38555 * 84.47373 * 12 11 10 21 21 C 1.52995 * 117.50330 * 133.76252 * 9 7 2 22 22 C 1.53000 * 117.49809 * 65.13704 * 9 7 2 23 23 H 0.97003 * 120.00446 * 4.99925 * 1 2 3 24 24 H 1.09000 * 109.47950 * 54.80505 * 10 9 7 25 25 H 1.09004 * 109.47078 * 174.81317 * 10 9 7 26 26 H 1.00902 * 111.00088 * 61.39609 * 11 10 9 27 27 H 1.09000 * 109.24358 * 290.15524 * 14 12 11 28 28 H 1.09007 * 109.23932 * 49.55705 * 14 12 11 29 29 H 1.09006 * 109.38686 * 190.14726 * 15 14 12 30 30 H 1.09002 * 109.38415 * 309.82834 * 15 14 12 31 31 H 1.09001 * 109.55069 * 56.20507 * 16 15 14 32 32 H 1.09002 * 109.55185 * 176.40004 * 16 15 14 33 33 H 1.08997 * 109.55275 * 303.66433 * 20 12 11 34 34 H 1.09002 * 109.54799 * 63.95352 * 20 12 11 35 35 H 1.09005 * 117.49781 * 359.97438 * 21 9 7 36 36 H 1.08998 * 117.50155 * 145.01996 * 21 9 7 37 37 H 1.09000 * 117.49677 * 214.98251 * 22 9 7 38 38 H 1.09001 * 117.50031 * 0.02562 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0815 -1.1957 -0.0804 9 6 1.2558 -2.4964 0.1201 10 6 0.8392 -2.8900 1.5386 11 7 2.0382 -3.1427 2.3488 12 6 1.6772 -3.6458 3.6809 13 1 0.7535 -3.1693 4.0095 14 6 2.7949 -3.3175 4.6665 15 6 2.3493 -3.5990 6.0984 16 6 2.2209 -5.1079 6.3191 17 16 0.9130 -5.7547 5.2369 18 8 0.9750 -7.1744 5.2472 19 8 -0.3093 -5.1081 5.5643 20 6 1.4683 -5.1603 3.6125 21 6 1.6386 -3.6224 -0.8424 22 6 0.3145 -2.8777 -1.0242 23 1 -0.4851 0.8368 -0.0732 24 1 0.2624 -2.0805 1.9859 25 1 0.2294 -3.7928 1.5009 26 1 2.6092 -2.3137 2.4180 27 1 3.6682 -3.9275 4.4355 28 1 3.0583 -2.2639 4.5728 29 1 3.0852 -3.1931 6.7927 30 1 1.3848 -3.1238 6.2773 31 1 3.1667 -5.5935 6.0786 32 1 1.9648 -5.3037 7.3604 33 1 0.7123 -5.3908 2.8618 34 1 2.4073 -5.6464 3.3477 35 1 2.4318 -3.4210 -1.5625 36 1 1.5939 -4.6440 -0.4651 37 1 -0.6014 -3.4094 -0.7664 38 1 0.2370 -2.1868 -1.8637 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854399.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:46 Heat of formation + Delta-G solvation = -76.776452 kcal Electronic energy + Delta-G solvation = -19800.225497 eV Core-core repulsion = 16769.344787 eV Total energy + Delta-G solvation = -3030.880710 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.43296 -38.23080 -37.72915 -37.06277 -34.78194 -33.95539 -31.16970 -28.71067 -27.64471 -26.09008 -23.29609 -22.79413 -21.73436 -20.85627 -19.78006 -17.94000 -17.89905 -17.35329 -16.69055 -16.58185 -16.23560 -15.98460 -15.62185 -15.38711 -14.67814 -14.51731 -14.15409 -13.76130 -13.53910 -13.35994 -13.18159 -13.08084 -13.02488 -12.86949 -12.74608 -12.32755 -12.26754 -12.15505 -11.97665 -11.79920 -11.64032 -11.26343 -10.99147 -10.81141 -10.38923 -9.94112 -9.19374 -8.07013 -6.19734 -0.88723 1.41002 1.45231 1.55141 1.77022 2.44036 2.73676 2.97194 3.20548 3.27413 3.65410 3.69470 3.75210 3.84231 3.96284 4.13520 4.34931 4.42769 4.50250 4.64126 4.68500 4.72814 4.77806 4.89022 4.98457 5.04109 5.06925 5.09691 5.21899 5.28959 5.33986 5.64325 5.67593 5.83168 6.27876 6.47910 6.66259 6.90594 7.49085 9.00218 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.025141 B = 0.005110 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.458521 B = 5478.441347 C = 6050.513520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.023 3.977 3 Si 0.949 3.051 4 H -0.262 1.262 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.498 4.498 8 H 0.057 0.943 9 C 0.026 3.974 10 C 0.115 3.885 11 N -0.664 5.664 12 C 0.089 3.911 13 H 0.041 0.959 14 C -0.140 4.140 15 C -0.109 4.109 16 C -0.575 4.575 17 S 2.417 3.583 18 O -0.984 6.984 19 O -0.986 6.986 20 C -0.586 4.586 21 C -0.176 4.176 22 C -0.172 4.172 23 H 0.258 0.742 24 H 0.004 0.996 25 H 0.044 0.956 26 H 0.350 0.650 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.119 0.881 30 H 0.073 0.927 31 H 0.167 0.833 32 H 0.156 0.844 33 H 0.117 0.883 34 H 0.160 0.840 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.065 0.935 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.591 -7.869 13.153 17.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.775 3.225 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.209 1.209 7 C -0.536 4.536 8 H 0.075 0.925 9 C 0.025 3.975 10 C -0.014 4.014 11 N -0.296 5.296 12 C -0.022 4.022 13 H 0.059 0.941 14 C -0.178 4.178 15 C -0.147 4.147 16 C -0.708 4.708 17 S 2.604 3.396 18 O -0.981 6.981 19 O -0.983 6.983 20 C -0.717 4.717 21 C -0.213 4.213 22 C -0.211 4.211 23 H 0.067 0.933 24 H 0.022 0.978 25 H 0.062 0.938 26 H 0.170 0.830 27 H 0.123 0.877 28 H 0.105 0.895 29 H 0.138 0.862 30 H 0.092 0.908 31 H 0.185 0.815 32 H 0.174 0.826 33 H 0.135 0.865 34 H 0.178 0.822 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.084 0.916 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.756 -8.900 13.161 17.264 hybrid contribution -0.041 2.183 -0.466 2.232 sum 6.715 -6.717 12.695 15.855 Atomic orbital electron populations 1.70129 1.07256 1.27095 1.50498 1.25696 0.95422 1.01923 0.94651 0.85652 0.79482 0.80144 0.77235 1.18644 1.21457 1.20881 1.20728 0.92771 0.89835 1.50293 0.92475 1.18927 0.98140 0.92844 0.87554 1.21242 0.90603 0.95810 0.93794 1.60403 1.19144 1.38198 1.11890 1.21261 0.98684 0.91255 0.91006 0.94135 1.21938 0.98334 1.04804 0.92701 1.21315 1.04775 0.91405 0.97250 1.30022 1.18215 1.06865 1.15664 1.07778 0.77869 0.74474 0.79500 1.93532 1.88171 1.29586 1.86783 1.93526 1.43781 1.77688 1.83317 1.30335 1.14022 1.05857 1.21456 1.22816 0.97505 0.96448 1.04516 1.22453 0.92604 1.02804 1.03204 0.93335 0.97804 0.93790 0.83002 0.87700 0.89516 0.86242 0.90783 0.81510 0.82595 0.86469 0.82182 0.90853 0.89634 0.91598 0.92517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.34 12.85 21.45 0.28 -51.06 16 2 C 0.02 1.21 5.44 84.65 0.46 1.67 16 3 Si 0.95 41.70 29.54 68.60 2.03 43.73 16 4 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 5 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.50 -25.77 8.31 25.60 0.21 -25.56 16 8 H 0.06 2.93 7.82 -2.91 -0.02 2.91 16 9 C 0.03 1.24 1.57 -52.93 -0.08 1.16 16 10 C 0.12 4.96 5.32 86.30 0.46 5.42 16 11 N -0.66 -22.79 6.27 -492.20 -3.09 -25.87 16 12 C 0.09 2.36 2.32 44.79 0.10 2.46 16 13 H 0.04 1.23 7.72 -2.38 -0.02 1.21 16 14 C -0.14 -2.44 5.02 30.32 0.15 -2.29 16 15 C -0.11 -1.41 5.73 30.47 0.17 -1.24 16 16 C -0.57 -6.49 6.35 71.99 0.46 -6.03 16 17 S 2.42 52.40 5.31 -56.49 -0.30 52.10 16 18 O -0.98 -27.44 18.10 -127.40 -2.31 -29.74 16 19 O -0.99 -30.13 17.93 -127.40 -2.28 -32.41 16 20 C -0.59 -13.48 5.85 72.00 0.42 -13.06 16 21 C -0.18 -7.51 9.96 30.59 0.30 -7.20 16 22 C -0.17 -8.21 9.39 30.59 0.29 -7.92 16 23 H 0.26 13.95 8.32 -92.71 -0.77 13.18 16 24 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.04 1.81 7.19 -2.38 -0.02 1.80 16 26 H 0.35 12.31 7.75 -89.69 -0.70 11.62 16 27 H 0.10 1.38 8.09 -2.39 -0.02 1.36 16 28 H 0.09 1.55 7.87 -2.38 -0.02 1.53 16 29 H 0.12 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.07 1.17 8.01 -2.39 -0.02 1.15 16 31 H 0.17 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.16 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.12 3.07 7.28 -2.39 -0.02 3.06 16 34 H 0.16 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 36 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 38 H 0.06 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -71.40 319.93 -2.38 -73.78 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.35 Total: 22.07 kcal Atomic # 6 Polarization: -55.53 SS G_CDS: 2.95 Total: -52.58 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -2.81 Total: -76.94 kcal Atomic # 8 Polarization: -57.57 SS G_CDS: -4.59 Total: -62.16 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Atomic # 16 Polarization: 52.40 SS G_CDS: -0.30 Total: 52.10 kcal Total: -71.40 -2.38 -73.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854399.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.998 kcal (2) G-P(sol) polarization free energy of solvation -71.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds