Wall clock time and date at job start Mon Mar 30 2020 01:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86799 * 120.00031 * 2 1 4 4 H 1.48501 * 109.47224 * 239.99803 * 3 2 1 5 5 H 1.48504 * 109.46992 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47315 * 119.99792 * 3 2 1 7 7 C 1.39862 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00386 * 197.95244 * 7 2 1 9 9 C 1.41142 * 119.99787 * 17.95322 * 7 2 1 10 10 C 1.40887 * 120.15677 * 204.59947 * 9 7 2 11 11 C 1.36339 * 119.83816 * 180.02562 * 10 9 7 12 12 C 1.39567 * 120.15778 * 0.02562 * 11 10 9 13 13 N 1.38861 * 119.83838 * 179.97438 * 12 11 10 14 14 C 1.46498 * 119.99928 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47012 * 180.02562 * 14 13 12 16 16 C 1.34515 * 125.78637 * 90.00838 * 15 14 13 17 17 C 1.41385 * 106.83825 * 179.76932 * 16 15 14 18 18 C 1.34509 * 106.84082 * 0.22360 * 17 16 15 19 19 C 1.50703 * 125.79184 * 179.97438 * 18 17 16 20 20 O 1.42902 * 109.47076 * 89.99759 * 19 18 17 21 21 O 1.34301 * 125.79027 * 270.16145 * 15 14 13 22 22 C 1.39567 * 120.32014 * 0.25761 * 12 11 10 23 23 C 1.36337 * 120.15742 * 359.48123 * 22 12 11 24 24 H 0.96993 * 119.99654 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.07982 * 0.02562 * 10 9 7 26 26 H 1.07991 * 119.91841 * 179.97438 * 11 10 9 27 27 H 0.97000 * 120.00159 * 0.02562 * 13 12 11 28 28 H 1.09006 * 109.47082 * 60.00767 * 14 13 12 29 29 H 1.09000 * 109.47586 * 300.00592 * 14 13 12 30 30 H 1.08000 * 126.58067 * 0.02851 * 16 15 14 31 31 H 1.07995 * 126.57875 * 180.25577 * 17 16 15 32 32 H 1.08995 * 109.47780 * 209.99921 * 19 18 17 33 33 H 1.08999 * 109.46940 * 330.00622 * 19 18 17 34 34 H 0.96693 * 113.99992 * 180.02562 * 20 19 18 35 35 H 1.07995 * 119.91962 * 179.71740 * 22 12 11 36 36 H 1.08001 * 120.08143 * 180.23948 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0968 1.6965 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0490 -1.2339 0.2888 9 6 1.3543 -2.4039 -0.3757 10 6 1.8267 -3.6472 0.0890 11 6 1.1901 -4.7954 -0.2789 12 6 0.0734 -4.7411 -1.1142 13 7 -0.5696 -5.9147 -1.4853 14 6 -1.7425 -5.8618 -2.3615 15 6 -2.2479 -7.2597 -2.6091 16 6 -3.1609 -7.9095 -1.8649 17 6 -3.3402 -9.1816 -2.4553 18 6 -2.5226 -9.2349 -3.5220 19 6 -2.3734 -10.4046 -4.4605 20 8 -3.3075 -10.2759 -5.5342 21 8 -1.8612 -8.0692 -3.6085 22 6 -0.3967 -3.5135 -1.5832 23 6 0.2267 -2.3570 -1.2192 24 1 -0.4849 0.8400 -0.0004 25 1 2.6910 -3.6907 0.7351 26 1 1.5514 -5.7491 0.0762 27 1 -0.2426 -6.7694 -1.1637 28 1 -1.4667 -5.4014 -3.3103 29 1 -2.5255 -5.2717 -1.8853 30 1 -3.6637 -7.5304 -0.9875 31 1 -4.0064 -9.9607 -2.1154 32 1 -1.3598 -10.4222 -4.8609 33 1 -2.5667 -11.3311 -3.9199 34 1 -3.2680 -10.9960 -6.1783 35 1 -1.2587 -3.4794 -2.2330 36 1 -0.1405 -1.4074 -1.5797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083924400.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:52 Heat of formation + Delta-G solvation = -8.399465 kcal Electronic energy + Delta-G solvation = -19340.722387 eV Core-core repulsion = 16177.362774 eV Total energy + Delta-G solvation = -3163.359613 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.67789 -37.98412 -37.20274 -35.26439 -33.28363 -32.95739 -31.08148 -29.47481 -28.92199 -27.06707 -24.55504 -23.56960 -21.87795 -21.13762 -20.31757 -19.88331 -17.99326 -17.21135 -17.10229 -16.16890 -15.88549 -15.07185 -14.97367 -14.82724 -14.37350 -13.82914 -13.57127 -13.27555 -12.90020 -12.70187 -12.63921 -12.20908 -12.02909 -11.78051 -11.68495 -11.19731 -11.00926 -10.87341 -10.55772 -10.47692 -9.98399 -9.72245 -9.31510 -9.24949 -8.57638 -8.55754 -7.50389 -6.65004 -6.42347 -4.04238 1.46872 2.43401 2.72708 2.92713 3.09736 3.14748 3.17966 3.35485 4.05537 4.07585 4.40668 4.57610 4.70612 4.75967 4.85057 4.98696 5.00921 5.54087 5.67514 5.71517 5.82206 5.94852 6.00270 6.26145 6.30293 6.41903 6.87491 6.92845 7.10536 7.16312 7.19194 7.35133 7.52106 7.68013 7.82281 8.14405 8.26167 8.45613 8.65474 8.77656 9.05580 9.14051 10.37084 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.048169 B = 0.002912 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.143909 B = 9612.484530 C = 9746.216199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.075 3.925 3 Si 0.904 3.096 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.467 4.467 8 H 0.073 0.927 9 C 0.076 3.924 10 C -0.187 4.187 11 C -0.154 4.154 12 C 0.088 3.912 13 N -0.758 5.758 14 C 0.217 3.783 15 C -0.004 4.004 16 C -0.199 4.199 17 C -0.184 4.184 18 C -0.027 4.027 19 C 0.160 3.840 20 O -0.567 6.567 21 O -0.164 6.164 22 C -0.163 4.163 23 C -0.125 4.125 24 H 0.277 0.723 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.387 0.613 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.149 0.851 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.385 0.615 35 H 0.089 0.911 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.039 -16.399 -6.666 18.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.141 4.141 3 Si 0.729 3.271 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.073 3.927 10 C -0.208 4.208 11 C -0.176 4.176 12 C -0.008 4.008 13 N -0.396 5.396 14 C 0.092 3.908 15 C -0.055 4.055 16 C -0.219 4.219 17 C -0.204 4.204 18 C -0.077 4.077 19 C 0.083 3.917 20 O -0.374 6.374 21 O -0.061 6.061 22 C -0.185 4.185 23 C -0.145 4.145 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.105 0.895 27 H 0.220 0.780 28 H 0.084 0.916 29 H 0.100 0.900 30 H 0.170 0.830 31 H 0.166 0.834 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.234 0.766 35 H 0.107 0.893 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.309 -15.501 -6.661 18.012 hybrid contribution 0.390 -0.129 0.077 0.418 sum -5.918 -15.629 -6.584 17.962 Atomic orbital electron populations 1.69846 1.07365 1.28777 1.37391 1.25804 0.94669 1.00913 0.92686 0.86453 0.80131 0.80792 0.79749 1.19075 1.20575 1.19257 1.19345 0.97928 0.91363 1.41157 0.90929 1.17507 0.92357 0.91993 0.90806 1.20545 1.02744 0.92564 1.04918 1.19793 0.97658 0.97120 1.03043 1.17303 0.95964 0.85235 1.02293 1.43824 1.32324 1.06384 1.57045 1.19425 0.89838 0.86008 0.95494 1.22730 0.99019 0.94239 0.89481 1.21684 1.02441 0.94858 1.02922 1.21610 1.02090 0.99053 0.97624 1.21921 0.98661 0.87728 0.99419 1.20254 0.93276 0.91478 0.86737 1.86578 1.60463 1.52087 1.38229 1.83995 1.54677 1.22445 1.44936 1.20096 1.01706 0.91914 1.04798 1.20932 0.98230 0.96427 0.98887 0.91224 0.88963 0.89545 0.78036 0.91619 0.90012 0.83004 0.83366 0.91694 0.90268 0.76637 0.89320 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.43 10.97 55.54 0.61 -20.82 16 2 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 3 Si 0.90 19.27 29.60 -169.99 -5.03 14.24 16 4 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 7 C -0.47 -12.71 9.03 -37.87 -0.34 -13.05 16 8 H 0.07 1.90 7.91 -52.49 -0.41 1.49 16 9 C 0.08 2.07 5.57 -106.79 -0.60 1.47 16 10 C -0.19 -4.67 9.74 -39.26 -0.38 -5.05 16 11 C -0.15 -3.49 9.82 -39.77 -0.39 -3.88 16 12 C 0.09 1.94 6.67 -83.69 -0.56 1.38 16 13 N -0.76 -13.66 5.69 -59.67 -0.34 -14.00 16 14 C 0.22 3.43 5.42 -5.19 -0.03 3.40 16 15 C 0.00 -0.06 6.69 -35.62 -0.24 -0.29 16 16 C -0.20 -2.63 10.81 -39.70 -0.43 -3.05 16 17 C -0.18 -2.21 10.81 -39.70 -0.43 -2.64 16 18 C -0.03 -0.34 6.95 -35.63 -0.25 -0.58 16 19 C 0.16 1.35 7.58 36.01 0.27 1.62 16 20 O -0.57 -5.09 13.64 -35.23 -0.48 -5.57 16 21 O -0.16 -2.48 10.65 5.71 0.06 -2.42 16 22 C -0.16 -3.82 9.23 -39.77 -0.37 -4.19 16 23 C -0.12 -3.28 8.64 -39.26 -0.34 -3.62 16 24 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 25 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 26 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.39 6.45 8.46 -40.82 -0.35 6.10 16 28 H 0.07 1.06 7.92 -51.93 -0.41 0.65 16 29 H 0.08 1.25 7.94 -51.93 -0.41 0.84 16 30 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.39 1.25 9.12 45.56 0.42 1.66 16 35 H 0.09 1.87 6.68 -52.49 -0.35 1.52 16 36 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 LS Contribution 314.94 15.07 4.75 4.75 Total: -1.00 -31.24 314.94 -8.11 -39.35 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -3.51 Total: 11.11 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -4.16 Total: -26.63 kcal Atomic # 7 Polarization: -35.08 SS G_CDS: 0.27 Total: -34.82 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.42 Total: -7.99 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.24 -8.11 -39.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083924400.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.948 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds