Wall clock time and date at job start Mon Mar 30 2020 01:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30909 * 1 3 3 Si 1.86799 * 120.00031 * 2 1 4 4 H 1.48501 * 109.47224 * 239.99803 * 3 2 1 5 5 H 1.48504 * 109.46992 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47315 * 119.99792 * 3 2 1 7 7 C 1.39862 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00386 * 197.95244 * 7 2 1 9 9 C 1.41142 * 119.99787 * 17.95322 * 7 2 1 10 10 C 1.40887 * 120.15677 * 204.59947 * 9 7 2 11 11 C 1.36339 * 119.83816 * 180.02562 * 10 9 7 12 12 C 1.39567 * 120.15778 * 0.02562 * 11 10 9 13 13 N 1.38861 * 119.83838 * 179.97438 * 12 11 10 14 14 C 1.46498 * 119.99928 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47012 * 180.02562 * 14 13 12 16 16 C 1.34515 * 125.78637 * 90.00838 * 15 14 13 17 17 C 1.41385 * 106.83825 * 179.76932 * 16 15 14 18 18 C 1.34509 * 106.84082 * 0.22360 * 17 16 15 19 19 C 1.50703 * 125.79184 * 179.97438 * 18 17 16 20 20 O 1.42902 * 109.47076 * 89.99759 * 19 18 17 21 21 O 1.34301 * 125.79027 * 270.16145 * 15 14 13 22 22 C 1.39567 * 120.32014 * 0.25761 * 12 11 10 23 23 C 1.36337 * 120.15742 * 359.48123 * 22 12 11 24 24 H 0.96993 * 119.99654 * 0.02562 * 1 2 3 25 25 H 1.07998 * 120.07982 * 0.02562 * 10 9 7 26 26 H 1.07991 * 119.91841 * 179.97438 * 11 10 9 27 27 H 0.97000 * 120.00159 * 0.02562 * 13 12 11 28 28 H 1.09006 * 109.47082 * 60.00767 * 14 13 12 29 29 H 1.09000 * 109.47586 * 300.00592 * 14 13 12 30 30 H 1.08000 * 126.58067 * 0.02851 * 16 15 14 31 31 H 1.07995 * 126.57875 * 180.25577 * 17 16 15 32 32 H 1.08995 * 109.47780 * 209.99921 * 19 18 17 33 33 H 1.08999 * 109.46940 * 330.00622 * 19 18 17 34 34 H 0.96693 * 113.99992 * 180.02562 * 20 19 18 35 35 H 1.07995 * 119.91962 * 179.71740 * 22 12 11 36 36 H 1.08001 * 120.08143 * 180.23948 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 3.0969 1.6964 -1.2125 5 1 1.2780 2.7465 -0.0006 6 1 3.0968 1.6965 1.2125 7 6 2.0084 -1.2112 0.0005 8 1 3.0490 -1.2339 0.2888 9 6 1.3543 -2.4039 -0.3757 10 6 1.8267 -3.6472 0.0890 11 6 1.1901 -4.7954 -0.2789 12 6 0.0734 -4.7411 -1.1142 13 7 -0.5696 -5.9147 -1.4853 14 6 -1.7425 -5.8618 -2.3615 15 6 -2.2479 -7.2597 -2.6091 16 6 -3.1609 -7.9095 -1.8649 17 6 -3.3402 -9.1816 -2.4553 18 6 -2.5226 -9.2349 -3.5220 19 6 -2.3734 -10.4046 -4.4605 20 8 -3.3075 -10.2759 -5.5342 21 8 -1.8612 -8.0692 -3.6085 22 6 -0.3967 -3.5135 -1.5832 23 6 0.2267 -2.3570 -1.2192 24 1 -0.4849 0.8400 -0.0004 25 1 2.6910 -3.6907 0.7351 26 1 1.5514 -5.7491 0.0762 27 1 -0.2426 -6.7694 -1.1637 28 1 -1.4667 -5.4014 -3.3103 29 1 -2.5255 -5.2717 -1.8853 30 1 -3.6637 -7.5304 -0.9875 31 1 -4.0064 -9.9607 -2.1154 32 1 -1.3598 -10.4222 -4.8609 33 1 -2.5667 -11.3311 -3.9199 34 1 -3.2680 -10.9960 -6.1783 35 1 -1.2587 -3.4794 -2.2330 36 1 -0.1405 -1.4074 -1.5797 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083924400.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:51 Heat of formation + Delta-G solvation = -29.489169 kcal Electronic energy + Delta-G solvation = -19341.636905 eV Core-core repulsion = 16177.362774 eV Total energy + Delta-G solvation = -3164.274131 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.67694 -39.78169 -37.84445 -36.89464 -34.97247 -34.05500 -32.31772 -31.36429 -30.45162 -28.38169 -26.08221 -24.91091 -23.05968 -22.75097 -21.88207 -21.15816 -19.15467 -18.62895 -18.38436 -17.45925 -17.08402 -16.74418 -16.20661 -15.73387 -15.70023 -15.42947 -14.92740 -14.46256 -14.39079 -14.06429 -13.88999 -13.82485 -13.53540 -13.33123 -12.87528 -12.73497 -12.72412 -12.60034 -12.26558 -11.60083 -11.21361 -11.12336 -11.08938 -10.95180 -10.36509 -9.57107 -9.41671 -8.55576 -8.22266 -6.02015 0.47264 1.10353 1.18093 1.40973 1.47185 1.51769 1.59931 1.79194 2.27820 2.83967 2.95670 3.36894 3.72667 3.84448 3.97301 4.03230 4.21400 4.32855 4.41308 4.47373 4.49634 4.54191 4.75114 4.98057 5.00208 5.03740 5.10417 5.26424 5.44451 5.48894 5.65109 5.78097 5.93922 6.10992 6.18194 6.36801 6.62489 6.82321 6.84762 7.06219 7.08301 7.24666 8.47971 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.048169 B = 0.002912 C = 0.002872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.143909 B = 9612.484530 C = 9746.216199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.032 3.968 3 Si 0.977 3.023 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.506 4.506 8 H 0.069 0.931 9 C 0.038 3.962 10 C -0.196 4.196 11 C -0.160 4.160 12 C 0.108 3.892 13 N -0.749 5.749 14 C 0.219 3.781 15 C -0.031 4.031 16 C -0.193 4.193 17 C -0.191 4.191 18 C -0.035 4.035 19 C 0.159 3.841 20 O -0.591 6.591 21 O -0.187 6.187 22 C -0.172 4.172 23 C -0.144 4.144 24 H 0.283 0.717 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.396 0.604 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.165 0.835 31 H 0.176 0.824 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.409 0.591 35 H 0.108 0.892 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.617 -18.331 -6.980 20.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.186 1.186 7 C -0.537 4.537 8 H 0.087 0.913 9 C 0.035 3.965 10 C -0.217 4.217 11 C -0.182 4.182 12 C 0.009 3.991 13 N -0.385 5.385 14 C 0.095 3.905 15 C -0.081 4.081 16 C -0.213 4.213 17 C -0.210 4.210 18 C -0.085 4.085 19 C 0.082 3.918 20 O -0.402 6.402 21 O -0.084 6.084 22 C -0.194 4.194 23 C -0.165 4.165 24 H 0.093 0.907 25 H 0.117 0.883 26 H 0.135 0.865 27 H 0.230 0.770 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.182 0.818 31 H 0.194 0.806 32 H 0.092 0.908 33 H 0.132 0.868 34 H 0.261 0.739 35 H 0.126 0.874 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.902 -17.493 -6.994 20.064 hybrid contribution 0.469 0.206 0.105 0.523 sum -6.433 -17.287 -6.890 19.690 Atomic orbital electron populations 1.69909 1.08738 1.29929 1.38174 1.26624 0.95477 1.04123 0.91816 0.85341 0.78766 0.76264 0.79792 1.18816 1.19453 1.18600 1.19581 0.98078 0.92725 1.43282 0.91298 1.17843 0.93483 0.93058 0.92126 1.20755 1.03145 0.92764 1.04992 1.20084 0.97586 0.97714 1.02863 1.17391 0.95190 0.86090 1.00423 1.43853 1.32514 1.05453 1.56683 1.19397 0.88968 0.87461 0.94714 1.22463 1.00686 0.94143 0.90782 1.21971 1.01354 0.95257 1.02714 1.21978 1.02437 0.99206 0.97358 1.22860 0.97798 0.87577 1.00283 1.20500 0.93768 0.90888 0.86663 1.86499 1.60647 1.53950 1.39093 1.83972 1.55633 1.23523 1.45308 1.20268 1.02257 0.91733 1.05189 1.20873 0.98972 0.96730 0.99883 0.90681 0.88330 0.86511 0.76951 0.92142 0.89420 0.81777 0.80623 0.90779 0.86840 0.73893 0.87383 0.88119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.93 10.97 21.82 0.24 -45.69 16 2 C 0.03 1.68 5.13 85.22 0.44 2.12 16 3 Si 0.98 40.21 29.60 68.60 2.03 42.24 16 4 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 5 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 6 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 7 C -0.51 -28.51 9.03 23.38 0.21 -28.30 16 8 H 0.07 3.76 7.91 -2.91 -0.02 3.73 16 9 C 0.04 2.11 5.57 -21.27 -0.12 2.00 16 10 C -0.20 -9.89 9.74 22.48 0.22 -9.68 16 11 C -0.16 -7.11 9.82 22.15 0.22 -6.89 16 12 C 0.11 4.62 6.67 38.67 0.26 4.88 16 13 N -0.75 -25.76 5.69 -342.69 -1.95 -27.71 16 14 C 0.22 6.67 5.42 85.63 0.46 7.13 16 15 C -0.03 -0.86 6.69 24.83 0.17 -0.69 16 16 C -0.19 -4.69 10.81 22.19 0.24 -4.45 16 17 C -0.19 -4.05 10.81 22.19 0.24 -3.81 16 18 C -0.04 -0.80 6.95 24.83 0.17 -0.63 16 19 C 0.16 2.21 7.58 71.24 0.54 2.75 16 20 O -0.59 -9.08 13.64 -148.98 -2.03 -11.12 16 21 O -0.19 -5.41 10.65 -2.50 -0.03 -5.43 16 22 C -0.17 -8.11 9.23 22.15 0.20 -7.91 16 23 C -0.14 -7.83 8.64 22.48 0.19 -7.64 16 24 H 0.28 14.10 8.30 -92.71 -0.77 13.33 16 25 H 0.10 4.69 8.06 -2.91 -0.02 4.67 16 26 H 0.12 4.40 8.06 -2.92 -0.02 4.38 16 27 H 0.40 12.36 8.46 -92.71 -0.78 11.57 16 28 H 0.06 1.91 7.92 -2.38 -0.02 1.89 16 29 H 0.09 2.58 7.94 -2.39 -0.02 2.56 16 30 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.18 2.61 8.06 -2.91 -0.02 2.59 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.41 1.54 9.12 -74.06 -0.68 0.86 16 35 H 0.11 4.54 6.68 -2.91 -0.02 4.52 16 36 H 0.10 5.73 6.16 -2.91 -0.02 5.71 16 Total: -1.00 -68.73 314.94 1.37 -67.36 By element: Atomic # 1 Polarization: 31.78 SS G_CDS: -0.34 Total: 31.44 kcal Atomic # 6 Polarization: -54.55 SS G_CDS: 3.44 Total: -51.10 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.71 Total: -73.39 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -2.06 Total: -16.55 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Total: -68.73 1.37 -67.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083924400.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.875 kcal (2) G-P(sol) polarization free energy of solvation -68.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds