Wall clock time and date at job start Mon Mar 30 2020 01:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38443 * 119.82450 * 2 1 4 4 C 1.37866 * 120.16689 * 179.72174 * 3 2 1 5 5 C 1.39868 * 119.82630 * 0.25426 * 4 3 2 6 6 C 1.47473 * 120.16698 * 180.02562 * 5 4 3 7 7 O 1.21526 * 119.99811 * 354.74009 * 6 5 4 8 8 C 1.48401 * 119.99828 * 174.74443 * 6 5 4 9 9 O 1.21558 * 120.00093 * 87.00179 * 8 6 5 10 10 N 1.34779 * 119.99643 * 267.00010 * 8 6 5 11 11 C 1.35168 * 120.00147 * 184.84056 * 10 8 6 12 12 H 1.08003 * 119.99496 * 18.60416 * 11 10 8 13 13 C 1.39980 * 120.00260 * 198.61467 * 11 10 8 14 14 N 1.30777 * 120.00133 * 12.92767 * 13 11 10 15 15 Si 1.86800 * 119.99946 * 192.93361 * 13 11 10 16 16 H 1.48500 * 109.47106 * 89.99449 * 15 13 11 17 17 H 1.48492 * 109.47076 * 209.99406 * 15 13 11 18 18 H 1.48495 * 109.47083 * 329.99851 * 15 13 11 19 19 C 1.46505 * 120.00002 * 4.83926 * 10 8 6 20 20 C 1.53001 * 117.50067 * 306.92540 * 19 10 8 21 21 C 1.53003 * 117.49695 * 238.26363 * 19 10 8 22 22 C 1.39871 * 119.66531 * 359.97438 * 5 4 3 23 23 C 1.37866 * 119.82367 * 0.02562 * 22 5 4 24 24 H 1.09004 * 109.46754 * 90.00693 * 1 2 3 25 25 H 1.08999 * 109.46882 * 209.99829 * 1 2 3 26 26 H 1.08995 * 109.47400 * 329.99875 * 1 2 3 27 27 H 1.07990 * 119.91162 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.08514 * 180.27268 * 4 3 2 29 29 H 0.96991 * 120.00116 * 180.02562 * 14 13 11 30 30 H 1.09000 * 115.55045 * 92.59776 * 19 10 8 31 31 H 1.09004 * 117.49517 * 0.02562 * 20 19 10 32 32 H 1.08993 * 117.49691 * 145.02007 * 20 19 10 33 33 H 1.09001 * 117.49494 * 214.98099 * 21 19 10 34 34 H 1.08997 * 117.50085 * 359.97438 * 21 19 10 35 35 H 1.08003 * 120.09006 * 179.97438 * 22 5 4 36 36 H 1.07998 * 119.91071 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2011 0.0000 4 6 3.5742 1.2093 0.0058 5 6 4.2771 0.0001 0.0063 6 6 5.7518 0.0001 0.0130 7 8 6.3598 1.0484 -0.0783 8 6 6.4933 -1.2799 0.1313 9 8 6.7541 -1.9255 -0.8651 10 7 6.8776 -1.7265 1.3435 11 6 7.6367 -2.8404 1.4439 12 1 8.1824 -3.2012 0.5845 13 6 7.7153 -3.5264 2.6615 14 7 6.8730 -3.2506 3.6231 15 14 9.0236 -4.8358 2.9130 16 1 10.2494 -4.2101 3.4708 17 1 8.5192 -5.8644 3.8577 18 1 9.3424 -5.4737 1.6105 19 6 6.4725 -1.0047 2.5523 20 6 6.7763 0.4935 2.6157 21 6 7.5812 -0.4879 3.4714 22 6 3.5743 -1.2092 0.0014 23 6 2.1956 -1.2010 -0.0043 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6513 2.1338 -0.0004 28 1 4.1099 2.1470 0.0102 29 1 6.9277 -3.7256 4.4669 30 1 5.5515 -1.3517 3.0207 31 1 7.2771 0.9422 1.7578 32 1 6.0553 1.1320 3.1260 33 1 7.3894 -0.4946 4.5443 34 1 8.6119 -0.6854 3.1769 35 1 4.1101 -2.1469 0.0014 36 1 1.6515 -2.1339 -0.0076 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096999834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:47 Heat of formation + Delta-G solvation = -3.779762 kcal Electronic energy + Delta-G solvation = -21027.891389 eV Core-core repulsion = 17864.732101 eV Total energy + Delta-G solvation = -3163.159287 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.08407 -38.67939 -37.40570 -36.09563 -33.21130 -32.75968 -31.35208 -30.85709 -27.91302 -25.85329 -23.64098 -22.43269 -21.94451 -21.43245 -20.88768 -18.71195 -17.12868 -16.95371 -16.13728 -15.24189 -15.12926 -14.89662 -14.54577 -14.27173 -13.92022 -13.83078 -13.44555 -13.35759 -13.24418 -12.63033 -12.26009 -12.13584 -11.73843 -11.56968 -11.41622 -11.19769 -10.86633 -10.69623 -10.50430 -10.44077 -10.32555 -9.92096 -9.45242 -8.94830 -8.82101 -8.55108 -8.25452 -7.98036 -6.46201 -3.94843 0.87814 1.56444 2.65843 3.06618 3.19581 3.24360 3.56473 3.89550 4.04378 4.31484 4.65057 4.82596 4.90711 4.93640 5.11974 5.16692 5.27431 5.49098 5.50068 5.61241 5.75061 5.77536 5.80064 5.94764 6.08505 6.14821 6.21426 6.37127 6.49939 6.61073 6.64479 6.68990 6.94473 7.06031 7.12439 7.41722 7.81751 7.87337 8.33153 8.99001 9.22498 9.76866 10.55832 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022699 B = 0.005819 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.215138 B = 4810.579706 C = 5072.685229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.062 4.062 3 C -0.141 4.141 4 C -0.058 4.058 5 C -0.158 4.158 6 C 0.413 3.587 7 O -0.445 6.445 8 C 0.403 3.597 9 O -0.573 6.573 10 N -0.381 5.381 11 C -0.323 4.323 12 H 0.105 0.895 13 C 0.046 3.954 14 N -0.854 5.854 15 Si 0.924 3.076 16 H -0.276 1.276 17 H -0.282 1.282 18 H -0.267 1.267 19 C 0.120 3.880 20 C -0.232 4.232 21 C -0.143 4.143 22 C -0.049 4.049 23 C -0.135 4.135 24 H 0.071 0.929 25 H 0.068 0.932 26 H 0.066 0.934 27 H 0.125 0.875 28 H 0.132 0.868 29 H 0.272 0.728 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.137 0.863 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 5.897 -0.031 12.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.062 4.062 3 C -0.159 4.159 4 C -0.076 4.076 5 C -0.159 4.159 6 C 0.287 3.713 7 O -0.319 6.319 8 C 0.190 3.810 9 O -0.459 6.459 10 N -0.098 5.098 11 C -0.451 4.451 12 H 0.123 0.877 13 C -0.162 4.162 14 N -0.490 5.490 15 Si 0.751 3.249 16 H -0.201 1.201 17 H -0.208 1.208 18 H -0.191 1.191 19 C 0.015 3.985 20 C -0.270 4.270 21 C -0.181 4.181 22 C -0.067 4.067 23 C -0.153 4.153 24 H 0.090 0.910 25 H 0.087 0.913 26 H 0.085 0.915 27 H 0.143 0.857 28 H 0.150 0.850 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.155 0.845 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.064 6.056 -0.336 11.750 hybrid contribution 0.629 -0.717 0.449 1.054 sum -9.435 5.339 0.113 10.841 Atomic orbital electron populations 1.20842 0.91156 1.02903 1.02384 1.20169 0.96083 0.93256 0.96685 1.20922 0.93811 0.97550 1.03587 1.21346 0.93946 0.97577 0.94717 1.20452 0.94359 0.94397 1.06735 1.22536 0.88725 0.89782 0.70247 1.90493 1.71360 1.34095 1.35925 1.19640 0.87498 0.88588 0.85231 1.90676 1.60976 1.58232 1.36027 1.42635 1.42359 1.22239 1.02576 1.19562 1.23967 1.02905 0.98623 0.87716 1.25399 0.97308 0.97945 0.95499 1.69643 1.33300 1.40706 1.05339 0.85946 0.80438 0.79891 0.78673 1.20133 1.20761 1.19110 1.21375 0.99742 0.88106 0.89295 1.23922 1.05137 0.93539 1.04416 1.22746 0.97416 1.01289 0.96636 1.21607 0.94231 0.98085 0.92818 1.20999 0.93915 0.97686 1.02677 0.90987 0.91312 0.91457 0.85722 0.85024 0.91716 0.86406 0.88009 0.89364 0.89452 0.89308 0.84519 0.85507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 10.00 36.01 0.36 -0.66 16 2 C -0.06 -0.77 5.89 -104.47 -0.62 -1.38 16 3 C -0.14 -1.79 9.68 -39.64 -0.38 -2.18 16 4 C -0.06 -0.89 9.60 -39.11 -0.38 -1.27 16 5 C -0.16 -2.94 5.88 -104.91 -0.62 -3.55 16 6 C 0.41 9.12 4.68 -31.64 -0.15 8.97 16 7 O -0.44 -10.02 14.71 5.34 0.08 -9.94 16 8 C 0.40 10.34 5.92 -12.07 -0.07 10.27 16 9 O -0.57 -16.40 16.77 5.31 0.09 -16.31 16 10 N -0.38 -9.79 2.89 -108.77 -0.31 -10.11 16 11 C -0.32 -8.75 9.15 -15.43 -0.14 -8.89 16 12 H 0.11 3.00 7.37 -52.48 -0.39 2.61 16 13 C 0.05 1.16 4.93 -17.35 -0.09 1.07 16 14 N -0.85 -21.22 10.30 55.55 0.57 -20.65 16 15 Si 0.92 19.90 29.58 -169.99 -5.03 14.87 16 16 H -0.28 -5.87 7.11 56.52 0.40 -5.46 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 19 C 0.12 2.72 3.69 -67.93 -0.25 2.47 16 20 C -0.23 -4.65 8.66 -26.69 -0.23 -4.88 16 21 C -0.14 -3.00 8.93 -26.69 -0.24 -3.24 16 22 C -0.05 -0.87 9.46 -39.11 -0.37 -1.24 16 23 C -0.13 -1.91 9.68 -39.64 -0.38 -2.29 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 27 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 28 H 0.13 1.92 7.66 -52.49 -0.40 1.51 16 29 H 0.27 6.39 8.29 -40.82 -0.34 6.05 16 30 H 0.12 2.74 7.70 -51.93 -0.40 2.34 16 31 H 0.10 2.20 5.77 -51.93 -0.30 1.90 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.09 1.98 8.14 -51.93 -0.42 1.55 16 35 H 0.14 2.66 7.16 -52.48 -0.38 2.29 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 LS Contribution 310.52 15.07 4.68 4.68 Total: -1.00 -29.97 310.52 -7.85 -37.81 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -4.37 Total: 6.44 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.55 Total: -6.79 kcal Atomic # 7 Polarization: -31.01 SS G_CDS: 0.26 Total: -30.75 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: 0.17 Total: -26.26 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.03 Total: 14.87 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -29.97 -7.85 -37.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096999834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.035 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds