Wall clock time and date at job start Mon Mar 30 2020 01:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38443 * 119.82450 * 2 1 4 4 C 1.37866 * 120.16689 * 179.72174 * 3 2 1 5 5 C 1.39868 * 119.82630 * 0.25426 * 4 3 2 6 6 C 1.47473 * 120.16698 * 180.02562 * 5 4 3 7 7 O 1.21526 * 119.99811 * 354.74009 * 6 5 4 8 8 C 1.48401 * 119.99828 * 174.74443 * 6 5 4 9 9 O 1.21558 * 120.00093 * 87.00179 * 8 6 5 10 10 N 1.34779 * 119.99643 * 267.00010 * 8 6 5 11 11 C 1.35168 * 120.00147 * 184.84056 * 10 8 6 12 12 H 1.08003 * 119.99496 * 18.60416 * 11 10 8 13 13 C 1.39980 * 120.00260 * 198.61467 * 11 10 8 14 14 N 1.30777 * 120.00133 * 12.92767 * 13 11 10 15 15 Si 1.86800 * 119.99946 * 192.93361 * 13 11 10 16 16 H 1.48500 * 109.47106 * 89.99449 * 15 13 11 17 17 H 1.48492 * 109.47076 * 209.99406 * 15 13 11 18 18 H 1.48495 * 109.47083 * 329.99851 * 15 13 11 19 19 C 1.46505 * 120.00002 * 4.83926 * 10 8 6 20 20 C 1.53001 * 117.50067 * 306.92540 * 19 10 8 21 21 C 1.53003 * 117.49695 * 238.26363 * 19 10 8 22 22 C 1.39871 * 119.66531 * 359.97438 * 5 4 3 23 23 C 1.37866 * 119.82367 * 0.02562 * 22 5 4 24 24 H 1.09004 * 109.46754 * 90.00693 * 1 2 3 25 25 H 1.08999 * 109.46882 * 209.99829 * 1 2 3 26 26 H 1.08995 * 109.47400 * 329.99875 * 1 2 3 27 27 H 1.07990 * 119.91162 * 359.97438 * 3 2 1 28 28 H 1.07994 * 120.08514 * 180.27268 * 4 3 2 29 29 H 0.96991 * 120.00116 * 180.02562 * 14 13 11 30 30 H 1.09000 * 115.55045 * 92.59776 * 19 10 8 31 31 H 1.09004 * 117.49517 * 0.02562 * 20 19 10 32 32 H 1.08993 * 117.49691 * 145.02007 * 20 19 10 33 33 H 1.09001 * 117.49494 * 214.98099 * 21 19 10 34 34 H 1.08997 * 117.50085 * 359.97438 * 21 19 10 35 35 H 1.08003 * 120.09006 * 179.97438 * 22 5 4 36 36 H 1.07998 * 119.91071 * 180.02562 * 23 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1956 1.2011 0.0000 4 6 3.5742 1.2093 0.0058 5 6 4.2771 0.0001 0.0063 6 6 5.7518 0.0001 0.0130 7 8 6.3598 1.0484 -0.0783 8 6 6.4933 -1.2799 0.1313 9 8 6.7541 -1.9255 -0.8651 10 7 6.8776 -1.7265 1.3435 11 6 7.6367 -2.8404 1.4439 12 1 8.1824 -3.2012 0.5845 13 6 7.7153 -3.5264 2.6615 14 7 6.8730 -3.2506 3.6231 15 14 9.0236 -4.8358 2.9130 16 1 10.2494 -4.2101 3.4708 17 1 8.5192 -5.8644 3.8577 18 1 9.3424 -5.4737 1.6105 19 6 6.4725 -1.0047 2.5523 20 6 6.7763 0.4935 2.6157 21 6 7.5812 -0.4879 3.4714 22 6 3.5743 -1.2092 0.0014 23 6 2.1956 -1.2010 -0.0043 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3634 0.8899 0.5138 27 1 1.6513 2.1338 -0.0004 28 1 4.1099 2.1470 0.0102 29 1 6.9277 -3.7256 4.4669 30 1 5.5515 -1.3517 3.0207 31 1 7.2771 0.9422 1.7578 32 1 6.0553 1.1320 3.1260 33 1 7.3894 -0.4946 4.5443 34 1 8.6119 -0.6854 3.1769 35 1 4.1101 -2.1469 0.0014 36 1 1.6515 -2.1339 -0.0076 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096999834.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:47 Heat of formation + Delta-G solvation = -20.663046 kcal Electronic energy + Delta-G solvation = -21028.623503 eV Core-core repulsion = 17864.732101 eV Total energy + Delta-G solvation = -3163.891402 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.75648 -40.10101 -39.07246 -38.02771 -35.14069 -33.88179 -33.33037 -32.02696 -29.20410 -27.55682 -25.28689 -23.64141 -23.59309 -23.16864 -22.30483 -20.38685 -19.05415 -18.62740 -17.81128 -17.13541 -16.63163 -16.23378 -16.07204 -15.91999 -15.37350 -15.29289 -14.96264 -14.64767 -14.51561 -14.30612 -13.91233 -13.38279 -12.99357 -12.98192 -12.86501 -12.68645 -12.53391 -12.31760 -12.16357 -12.12860 -11.96199 -11.76318 -11.22379 -10.78194 -10.18654 -9.98835 -9.97379 -9.69705 -8.42840 -6.02454 -0.48223 0.40539 1.15980 1.27081 1.40707 1.51185 1.68121 2.16184 2.52922 2.77643 2.87479 3.05288 3.29871 3.73042 3.90713 4.00121 4.03641 4.06259 4.21521 4.35718 4.40736 4.46057 4.73150 4.78180 4.80602 4.91382 4.98305 5.07010 5.23602 5.26226 5.30085 5.33971 5.37068 5.37791 5.56895 5.82047 5.94981 6.16373 6.33398 6.97377 7.22301 7.77964 8.57366 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.022699 B = 0.005819 C = 0.005518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.215138 B = 4810.579706 C = 5072.685229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.044 4.044 3 C -0.130 4.130 4 C -0.056 4.056 5 C -0.187 4.187 6 C 0.419 3.581 7 O -0.461 6.461 8 C 0.382 3.618 9 O -0.623 6.623 10 N -0.384 5.384 11 C -0.366 4.366 12 H 0.074 0.926 13 C 0.025 3.975 14 N -0.855 5.855 15 Si 0.986 3.014 16 H -0.265 1.265 17 H -0.265 1.265 18 H -0.277 1.277 19 C 0.099 3.901 20 C -0.204 4.204 21 C -0.136 4.136 22 C -0.070 4.070 23 C -0.136 4.136 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.088 0.912 27 H 0.167 0.833 28 H 0.140 0.860 29 H 0.282 0.718 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.175 7.119 1.641 15.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.045 4.045 3 C -0.148 4.148 4 C -0.074 4.074 5 C -0.188 4.188 6 C 0.296 3.704 7 O -0.337 6.337 8 C 0.171 3.829 9 O -0.514 6.514 10 N -0.099 5.099 11 C -0.494 4.494 12 H 0.092 0.908 13 C -0.184 4.184 14 N -0.489 5.489 15 Si 0.808 3.192 16 H -0.190 1.190 17 H -0.189 1.189 18 H -0.202 1.202 19 C -0.005 4.005 20 C -0.242 4.242 21 C -0.174 4.174 22 C -0.088 4.088 23 C -0.154 4.154 24 H 0.108 0.892 25 H 0.097 0.903 26 H 0.107 0.893 27 H 0.185 0.815 28 H 0.158 0.842 29 H 0.093 0.907 30 H 0.129 0.871 31 H 0.104 0.896 32 H 0.140 0.860 33 H 0.128 0.872 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -12.780 7.296 1.383 14.780 hybrid contribution 1.333 -1.134 -0.037 1.750 sum -11.447 6.161 1.346 13.069 Atomic orbital electron populations 1.20962 0.87702 1.04566 1.03919 1.20683 0.98392 0.92156 0.93227 1.21386 0.92551 0.99478 1.01363 1.21513 0.95325 0.96340 0.94236 1.20202 0.91841 0.96222 1.10583 1.22338 0.90453 0.87799 0.69822 1.90462 1.72070 1.33686 1.37455 1.20472 0.87588 0.90087 0.84781 1.90599 1.62987 1.60312 1.37486 1.42816 1.41346 1.22116 1.03623 1.19490 1.25911 1.05120 0.98891 0.90823 1.26071 0.98670 0.99185 0.94425 1.69687 1.33140 1.40645 1.05465 0.85061 0.78235 0.77622 0.78246 1.19037 1.18919 1.20248 1.21383 1.00197 0.89926 0.89005 1.23876 1.04692 0.92168 1.03438 1.22754 0.95974 1.01082 0.97599 1.21449 0.95903 0.96470 0.95005 1.21258 0.92302 0.99841 1.02024 0.89248 0.90305 0.89271 0.81536 0.84232 0.90706 0.87082 0.89633 0.85991 0.87239 0.91069 0.88099 0.83405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.41 10.00 71.24 0.71 -0.70 16 2 C -0.04 -0.94 5.89 -19.77 -0.12 -1.05 16 3 C -0.13 -2.80 9.68 22.23 0.22 -2.59 16 4 C -0.06 -1.64 9.60 22.58 0.22 -1.42 16 5 C -0.19 -7.12 5.88 -20.05 -0.12 -7.24 16 6 C 0.42 19.52 4.68 27.42 0.13 19.65 16 7 O -0.46 -21.58 14.71 -3.80 -0.06 -21.64 16 8 C 0.38 21.10 5.92 86.95 0.52 21.62 16 9 O -0.62 -38.98 16.77 -3.90 -0.07 -39.04 16 10 N -0.38 -20.90 2.89 -616.33 -1.78 -22.68 16 11 C -0.37 -21.05 9.15 84.60 0.77 -20.28 16 12 H 0.07 4.59 7.37 -2.91 -0.02 4.56 16 13 C 0.02 1.25 4.93 85.27 0.42 1.67 16 14 N -0.86 -42.38 10.30 21.83 0.22 -42.16 16 15 Si 0.99 41.09 29.58 68.60 2.03 43.12 16 16 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 17 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 19 C 0.10 4.61 3.69 44.99 0.17 4.77 16 20 C -0.20 -8.10 8.66 30.62 0.27 -7.84 16 21 C -0.14 -5.69 8.93 30.62 0.27 -5.42 16 22 C -0.07 -2.55 9.46 22.58 0.21 -2.34 16 23 C -0.14 -3.67 9.68 22.23 0.22 -3.46 16 24 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 25 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 26 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 27 H 0.17 2.25 8.06 -2.92 -0.02 2.23 16 28 H 0.14 3.82 7.66 -2.91 -0.02 3.79 16 29 H 0.28 12.87 8.29 -92.71 -0.77 12.10 16 30 H 0.11 5.27 7.70 -2.39 -0.02 5.25 16 31 H 0.09 3.75 5.77 -2.38 -0.01 3.74 16 32 H 0.12 4.00 8.14 -2.39 -0.02 3.98 16 33 H 0.11 4.04 8.14 -2.39 -0.02 4.02 16 34 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 35 H 0.10 4.34 7.16 -2.91 -0.02 4.32 16 36 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -70.24 310.52 5.33 -64.92 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 1.09 Total: 22.10 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 3.88 Total: -4.61 kcal Atomic # 7 Polarization: -63.28 SS G_CDS: -1.56 Total: -64.84 kcal Atomic # 8 Polarization: -60.56 SS G_CDS: -0.12 Total: -60.68 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.12 kcal Total: -70.24 5.33 -64.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096999834.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.254 kcal (2) G-P(sol) polarization free energy of solvation -70.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds