Wall clock time and date at job start Mon Mar 30 2020 01:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00003 * 2 1 4 4 H 1.48500 * 109.47569 * 270.00363 * 3 2 1 5 5 H 1.48503 * 109.46982 * 30.00557 * 3 2 1 6 6 H 1.48505 * 109.47046 * 150.00147 * 3 2 1 7 7 C 1.37877 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99522 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00066 * 0.27450 * 7 2 1 10 10 C 1.52994 * 109.46883 * 179.72321 * 9 7 2 11 11 N 1.46902 * 109.46966 * 180.12093 * 10 9 7 12 12 C 1.46908 * 110.99864 * 77.99429 * 11 10 9 13 13 C 1.52996 * 117.50071 * 357.10138 * 12 11 10 14 14 C 1.52993 * 117.50177 * 288.43758 * 12 11 10 15 15 C 1.46899 * 111.00053 * 201.94844 * 11 10 9 16 16 H 1.09000 * 109.63919 * 185.49325 * 15 11 10 17 17 C 1.53875 * 109.64538 * 65.06555 * 15 11 10 18 18 C 1.55044 * 106.62546 * 192.96478 * 17 15 11 19 19 S 1.83289 * 102.56736 * 42.43495 * 18 17 15 20 20 O 1.42098 * 109.35664 * 90.18099 * 19 18 17 21 21 O 1.42093 * 109.35475 * 223.25685 * 19 18 17 22 22 C 1.54160 * 109.64769 * 305.79157 * 15 11 10 23 23 H 0.97003 * 120.00096 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47126 * 299.72403 * 9 7 2 25 25 H 1.09002 * 109.46877 * 59.72007 * 9 7 2 26 26 H 1.08997 * 109.47391 * 300.11680 * 10 9 7 27 27 H 1.08999 * 109.47262 * 60.12425 * 10 9 7 28 28 H 1.09000 * 115.54412 * 142.76752 * 12 11 10 29 29 H 1.09009 * 117.49619 * 359.97438 * 13 12 11 30 30 H 1.08999 * 117.50148 * 145.01375 * 13 12 11 31 31 H 1.08994 * 117.50192 * 214.97710 * 14 12 11 32 32 H 1.09004 * 117.49475 * 359.97438 * 14 12 11 33 33 H 1.08999 * 110.03010 * 312.26104 * 17 15 11 34 34 H 1.09003 * 110.02528 * 73.67521 * 17 15 11 35 35 H 1.09001 * 110.79185 * 160.70381 * 18 17 15 36 36 H 1.09000 * 110.78993 * 284.16462 * 18 17 15 37 37 H 1.08999 * 110.32033 * 266.66255 * 22 15 11 38 38 H 1.08997 * 110.32080 * 28.85336 * 22 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0074 10 6 2.2452 -3.6620 -0.0135 11 7 1.5107 -4.9342 -0.0231 12 6 1.0025 -5.2385 -1.3675 13 6 1.2459 -4.2020 -2.4662 14 6 -0.1599 -4.3931 -1.8915 15 6 2.3483 -6.0295 0.4836 16 1 1.8182 -6.9758 0.3762 17 6 2.6769 -5.7859 1.9669 18 6 3.8114 -6.7752 2.3383 19 16 4.9202 -6.6752 0.8822 20 8 5.8860 -5.6548 1.0949 21 8 5.3406 -7.9832 0.5197 22 6 3.6673 -6.0842 -0.3125 23 1 -0.4850 0.8401 0.0004 24 1 0.6244 -2.5616 0.8823 25 1 0.6243 -2.5522 -0.8976 26 1 2.8732 -3.5984 -0.9021 27 1 2.8704 -3.6102 0.8778 28 1 1.0288 -6.2902 -1.6529 29 1 1.7828 -3.2939 -2.1914 30 1 1.4319 -4.5716 -3.4746 31 1 -0.8982 -4.8883 -2.5221 32 1 -0.5480 -3.6113 -1.2385 33 1 3.0146 -4.7595 2.1108 34 1 1.7972 -5.9793 2.5808 35 1 4.3283 -6.4500 3.2412 36 1 3.4201 -7.7854 2.4579 37 1 3.5786 -6.7828 -1.1445 38 1 3.9307 -5.0915 -0.6773 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109767363.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:51 Heat of formation + Delta-G solvation = -25.411597 kcal Electronic energy + Delta-G solvation = -20066.350115 eV Core-core repulsion = 17037.696752 eV Total energy + Delta-G solvation = -3028.653363 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.44443 -37.06887 -36.19527 -35.90863 -33.30447 -32.03421 -30.15181 -28.47300 -25.15339 -24.59852 -22.12503 -21.32206 -20.94690 -19.21640 -18.80039 -17.05551 -16.81289 -16.25224 -16.03908 -15.65939 -14.82111 -14.57983 -14.30461 -14.16460 -13.88542 -12.80937 -12.57008 -12.52178 -12.42509 -12.16466 -12.09162 -12.05524 -11.78987 -11.31202 -11.11135 -10.89328 -10.81098 -10.73457 -10.61579 -10.54166 -10.26792 -9.91612 -9.60832 -9.46185 -9.05746 -8.34270 -7.77466 -6.03793 -4.06049 -0.01087 2.47138 3.29921 3.36865 3.40193 3.50144 3.80318 4.02716 4.28798 4.43613 4.45738 4.55184 4.71695 4.81397 4.93192 5.28699 5.31642 5.32885 5.36600 5.42201 5.54478 5.58647 5.82429 5.92103 5.94444 6.13064 6.18994 6.31907 6.60319 6.77146 6.91561 7.28101 7.41339 7.71979 7.82948 8.01859 8.37287 9.01046 9.58072 11.07126 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020353 B = 0.005649 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.379407 B = 4955.839401 C = 5723.127358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.054 0.946 9 C 0.016 3.984 10 C 0.041 3.959 11 N -0.488 5.488 12 C 0.015 3.985 13 C -0.216 4.216 14 C -0.171 4.171 15 C 0.097 3.903 16 H 0.098 0.902 17 C -0.118 4.118 18 C -0.584 4.584 19 S 2.384 3.616 20 O -0.937 6.937 21 O -0.949 6.949 22 C -0.631 4.631 23 H 0.260 0.740 24 H 0.023 0.977 25 H 0.040 0.960 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.105 0.895 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.137 0.863 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.409 -14.434 0.829 14.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.072 0.928 9 C -0.021 4.021 10 C -0.085 4.085 11 N -0.209 5.209 12 C -0.094 4.094 13 C -0.254 4.254 14 C -0.208 4.208 15 C -0.014 4.014 16 H 0.116 0.884 17 C -0.157 4.157 18 C -0.715 4.715 19 S 2.568 3.432 20 O -0.934 6.934 21 O -0.945 6.945 22 C -0.763 4.763 23 H 0.070 0.930 24 H 0.041 0.959 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.084 0.916 28 H 0.122 0.878 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.123 0.877 35 H 0.156 0.844 36 H 0.154 0.846 37 H 0.155 0.845 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.834 -14.475 1.055 15.011 hybrid contribution 0.293 1.053 -0.542 1.220 sum 4.127 -13.421 0.513 14.051 Atomic orbital electron populations 1.69958 1.05964 1.26608 1.50501 1.24948 0.94792 0.99073 0.95229 0.86642 0.79939 0.83611 0.78113 1.20708 1.21229 1.19852 1.21196 0.92997 0.91053 1.51166 0.92822 1.19432 0.94178 0.89569 0.98910 1.22775 0.97481 0.88458 0.99775 1.62159 1.35650 1.02041 1.21072 1.22489 1.03889 0.95375 0.87652 1.23695 1.01311 1.03180 0.97263 1.23350 0.91036 1.03312 1.03123 1.22229 0.89463 0.97500 0.92229 0.88389 1.22363 0.98563 0.99507 0.95238 1.30582 1.13637 1.08466 1.18778 1.09144 0.78256 0.75517 0.80308 1.93630 1.56519 1.58708 1.84515 1.93583 1.80734 1.38087 1.82144 1.31279 1.15462 1.14240 1.15288 0.92992 0.95873 0.94222 0.94255 0.91629 0.87809 0.85973 0.89978 0.89766 0.86372 0.88354 0.87674 0.84429 0.84617 0.84508 0.83615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.81 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.14 9.11 -34.44 -0.31 -14.45 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.02 0.39 4.11 -27.88 -0.11 0.27 16 10 C 0.04 0.77 3.20 -3.83 -0.01 0.75 16 11 N -0.49 -7.56 4.60 -217.46 -1.00 -8.56 16 12 C 0.01 0.22 5.57 -67.71 -0.38 -0.16 16 13 C -0.22 -3.46 8.93 -26.70 -0.24 -3.69 16 14 C -0.17 -2.76 9.64 -26.70 -0.26 -3.02 16 15 C 0.10 1.12 2.53 -66.65 -0.17 0.95 16 16 H 0.10 0.92 7.99 -51.93 -0.42 0.50 16 17 C -0.12 -1.26 5.88 -25.19 -0.15 -1.41 16 18 C -0.58 -4.91 7.31 38.24 0.28 -4.63 16 19 S 2.38 26.79 6.10 -107.50 -0.66 26.14 16 20 O -0.94 -14.41 18.15 -57.73 -1.05 -15.46 16 21 O -0.95 -13.13 18.15 -57.73 -1.05 -14.17 16 22 C -0.63 -6.93 6.17 37.76 0.23 -6.70 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.04 0.97 3.86 -51.93 -0.20 0.77 16 26 H 0.04 0.73 5.01 -51.93 -0.26 0.47 16 27 H 0.07 1.20 5.71 -51.93 -0.30 0.90 16 28 H 0.10 1.26 7.87 -51.93 -0.41 0.85 16 29 H 0.12 2.32 4.82 -51.92 -0.25 2.07 16 30 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.12 2.31 5.95 -51.93 -0.31 2.00 16 33 H 0.10 1.21 5.95 -51.93 -0.31 0.90 16 34 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.14 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.14 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.15 1.83 5.76 -51.93 -0.30 1.53 16 LS Contribution 304.99 15.07 4.60 4.60 Total: -1.00 -33.69 304.99 -9.90 -43.59 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.25 Total: 3.21 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: -1.22 Total: -30.48 kcal Atomic # 7 Polarization: -33.36 SS G_CDS: -0.26 Total: -33.63 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -2.10 Total: -29.63 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 26.79 SS G_CDS: -0.66 Total: 26.14 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.69 -9.90 -43.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109767363.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.181 kcal (2) G-P(sol) polarization free energy of solvation -33.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds