Wall clock time and date at job start Mon Mar 30 2020 01:17:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86792 * 119.99986 * 2 1 4 4 H 1.48495 * 109.47682 * 0.02562 * 3 2 1 5 5 H 1.48502 * 109.47114 * 120.00243 * 3 2 1 6 6 H 1.48501 * 109.47055 * 239.99799 * 3 2 1 7 7 C 1.37878 * 119.99559 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99699 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00111 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.46960 * 179.97438 * 9 7 2 11 11 N 1.46902 * 109.47261 * 182.34680 * 10 9 7 12 12 C 1.46903 * 110.99667 * 60.91316 * 11 10 9 13 13 C 1.53004 * 117.49606 * 135.58372 * 12 11 10 14 14 C 1.52992 * 60.00000 * 252.51300 * 13 12 11 15 15 C 1.46908 * 110.99795 * 296.96368 * 11 10 9 16 16 H 1.08997 * 109.64082 * 64.38248 * 15 11 10 17 17 C 1.53877 * 109.64133 * 184.67576 * 15 11 10 18 18 C 1.55050 * 106.61780 * 167.03453 * 17 15 11 19 19 S 1.83282 * 102.56849 * 317.56441 * 18 17 15 20 20 O 1.42108 * 109.35507 * 269.81803 * 19 18 17 21 21 O 1.42100 * 109.47749 * 136.64792 * 19 18 17 22 22 C 1.54160 * 109.64344 * 303.95161 * 15 11 10 23 23 H 0.96999 * 120.00454 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.47577 * 299.99653 * 9 7 2 25 25 H 1.09002 * 109.47260 * 60.00043 * 9 7 2 26 26 H 1.08998 * 109.47428 * 302.34526 * 10 9 7 27 27 H 1.09000 * 109.47185 * 62.34890 * 10 9 7 28 28 H 1.08998 * 115.55019 * 281.29008 * 12 11 10 29 29 H 1.09006 * 117.49459 * 0.02562 * 13 12 11 30 30 H 1.08998 * 117.49737 * 145.01949 * 13 12 11 31 31 H 1.09001 * 117.49737 * 252.51490 * 14 13 12 32 32 H 1.08997 * 117.50280 * 107.49229 * 14 13 12 33 33 H 1.08995 * 110.02955 * 286.32358 * 17 15 11 34 34 H 1.08994 * 110.03245 * 47.74351 * 17 15 11 35 35 H 1.09004 * 110.78688 * 199.30051 * 18 17 15 36 36 H 1.08992 * 110.79184 * 75.83800 * 18 17 15 37 37 H 1.08992 * 110.32166 * 331.13905 * 22 15 11 38 38 H 1.09000 * 110.32039 * 93.23870 * 22 15 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5115 -4.9336 -0.0562 12 6 0.7087 -5.0238 -1.2831 13 6 0.7405 -6.3459 -2.0525 14 6 1.4592 -5.1172 -2.6131 15 6 0.6722 -5.1107 1.1364 16 1 -0.0983 -4.3401 1.1599 17 6 0.0102 -6.4994 1.1015 18 6 -0.5763 -6.7467 2.5153 19 16 0.7576 -6.1347 3.6131 20 8 1.6476 -7.2013 3.9127 21 8 0.1899 -5.3694 4.6673 22 6 1.5444 -5.0104 2.4036 23 1 -0.4851 -0.8400 0.0004 24 1 0.6239 -2.5568 0.8903 25 1 0.6246 -2.5571 -0.8897 26 1 2.8992 -3.5811 -0.8676 27 1 2.8438 -3.6284 0.9108 28 1 -0.2299 -4.4697 -1.2726 29 1 1.3568 -7.1489 -1.6479 30 1 -0.1774 -6.6619 -2.5482 31 1 1.0142 -4.6247 -3.4777 32 1 2.5486 -5.1116 -2.5778 33 1 -0.7872 -6.5142 0.3586 34 1 0.7534 -7.2614 0.8671 35 1 -0.7553 -7.8094 2.6794 36 1 -1.4911 -6.1722 2.6606 37 1 2.5619 -5.3370 2.1895 38 1 1.5473 -3.9879 2.7812 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109767367.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:53 Heat of formation + Delta-G solvation = -72.469258 kcal Electronic energy + Delta-G solvation = -20002.241904 eV Core-core repulsion = 16971.547968 eV Total energy + Delta-G solvation = -3030.693936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.35348 -38.12286 -37.16153 -36.78581 -35.98253 -34.06160 -30.79642 -29.85643 -26.74865 -25.08845 -23.63639 -23.08744 -22.57753 -20.44296 -19.81559 -18.97436 -18.01524 -17.80840 -16.84745 -16.61592 -16.29804 -15.88262 -15.65923 -15.44875 -14.97521 -14.62278 -14.19805 -14.08725 -13.60314 -13.37221 -13.26592 -13.22503 -13.10074 -12.64895 -12.57725 -12.52418 -12.32039 -12.16522 -11.98045 -11.83549 -11.65444 -11.42013 -11.14714 -10.94772 -10.77323 -10.55912 -9.31958 -8.70562 -6.42303 -0.93586 1.49258 1.54785 1.56729 1.75857 2.52031 2.60052 2.71367 2.92277 3.09875 3.12721 3.39929 3.64229 3.75866 3.94838 4.03859 4.08309 4.12495 4.33466 4.37049 4.51434 4.57319 4.69195 4.74182 4.79568 4.81048 4.85760 4.99376 5.07860 5.12317 5.31530 5.33534 5.37676 5.74643 6.09094 6.15189 6.17647 6.56695 7.38835 8.69002 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.016673 B = 0.006150 C = 0.004900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.961332 B = 4551.973888 C = 5712.384930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.037 4.037 3 Si 1.113 2.887 4 H -0.285 1.285 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.617 4.617 8 H 0.050 0.950 9 C -0.011 4.011 10 C 0.076 3.924 11 N -0.489 5.489 12 C -0.016 4.016 13 C -0.131 4.131 14 C -0.177 4.177 15 C 0.084 3.916 16 H 0.047 0.953 17 C -0.107 4.107 18 C -0.556 4.556 19 S 2.403 3.597 20 O -0.966 6.966 21 O -0.984 6.984 22 C -0.589 4.589 23 H 0.254 0.746 24 H -0.010 1.010 25 H -0.009 1.009 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.173 0.827 36 H 0.152 0.848 37 H 0.152 0.848 38 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.557 -16.338 -0.700 16.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.235 4.235 3 Si 0.934 3.066 4 H -0.210 1.210 5 H -0.196 1.196 6 H -0.193 1.193 7 C -0.655 4.655 8 H 0.068 0.932 9 C -0.049 4.049 10 C -0.052 4.052 11 N -0.212 5.212 12 C -0.125 4.125 13 C -0.169 4.169 14 C -0.214 4.214 15 C -0.026 4.026 16 H 0.065 0.935 17 C -0.146 4.146 18 C -0.689 4.689 19 S 2.590 3.410 20 O -0.964 6.964 21 O -0.982 6.982 22 C -0.718 4.718 23 H 0.064 0.936 24 H 0.008 0.992 25 H 0.010 0.990 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.191 0.809 36 H 0.170 0.830 37 H 0.171 0.829 38 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.130 -15.300 0.279 15.303 hybrid contribution -0.621 -0.091 -0.680 0.925 sum -0.751 -15.391 -0.400 15.415 Atomic orbital electron populations 1.70937 1.07940 1.29729 1.48862 1.27331 0.96589 1.06735 0.92806 0.82984 0.74210 0.71370 0.78011 1.21018 1.19574 1.19348 1.22438 0.94675 0.93504 1.54907 0.93188 1.19648 0.95780 0.95329 0.94130 1.22004 0.95803 0.86010 1.01378 1.62328 1.25743 1.32969 1.00182 1.22309 0.97502 1.03503 0.89199 1.23170 1.02732 0.90567 1.00401 1.22985 0.99807 1.03260 0.95384 1.22041 0.93126 0.98642 0.88748 0.93543 1.22289 1.01820 0.95042 0.95404 1.30447 1.15199 1.14629 1.08653 1.08499 0.78820 0.76203 0.77470 1.93560 1.64723 1.53802 1.84266 1.93553 1.78405 1.72054 1.54142 1.30628 1.12753 1.16170 1.12254 0.93641 0.99166 0.99031 0.91863 0.91241 0.91454 0.87001 0.86849 0.88912 0.88952 0.86939 0.87078 0.80923 0.82958 0.82950 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.75 13.65 21.45 0.29 -57.46 16 2 C -0.04 -2.13 5.46 84.65 0.46 -1.66 16 3 Si 1.11 50.20 29.90 68.60 2.05 52.25 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 7 C -0.62 -34.58 9.11 25.60 0.23 -34.35 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 9 C -0.01 -0.52 3.69 29.85 0.11 -0.41 16 10 C 0.08 2.95 4.92 86.31 0.42 3.38 16 11 N -0.49 -14.89 4.67 -841.86 -3.93 -18.82 16 12 C -0.02 -0.46 3.05 44.92 0.14 -0.33 16 13 C -0.13 -2.61 9.92 30.59 0.30 -2.31 16 14 C -0.18 -4.61 9.90 30.59 0.30 -4.31 16 15 C 0.08 2.29 1.90 45.60 0.09 2.37 16 16 H 0.05 1.48 6.67 -2.39 -0.02 1.46 16 17 C -0.11 -1.87 5.05 31.59 0.16 -1.72 16 18 C -0.56 -8.11 7.31 72.68 0.53 -7.57 16 19 S 2.40 56.33 6.10 -56.49 -0.34 55.99 16 20 O -0.97 -27.41 18.15 -127.47 -2.31 -29.72 16 21 O -0.98 -31.52 18.15 -127.47 -2.31 -33.83 16 22 C -0.59 -15.57 5.38 72.37 0.39 -15.18 16 23 H 0.25 15.77 7.22 -92.71 -0.67 15.11 16 24 H -0.01 -0.52 6.56 -2.39 -0.02 -0.53 16 25 H -0.01 -0.45 6.69 -2.39 -0.02 -0.47 16 26 H 0.06 2.52 7.55 -2.39 -0.02 2.50 16 27 H 0.07 2.67 6.64 -2.39 -0.02 2.65 16 28 H 0.07 2.20 7.61 -2.39 -0.02 2.18 16 29 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 30 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.09 2.49 7.94 -2.39 -0.02 2.47 16 33 H 0.11 1.71 7.66 -2.39 -0.02 1.69 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.64 16 35 H 0.17 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.15 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.15 3.76 7.72 -2.39 -0.02 3.75 16 38 H 0.12 3.72 8.13 -2.39 -0.02 3.70 16 Total: -1.00 -76.53 314.61 -2.28 -78.81 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 1.14 Total: 14.87 kcal Atomic # 6 Polarization: -65.23 SS G_CDS: 3.14 Total: -62.09 kcal Atomic # 7 Polarization: -72.64 SS G_CDS: -3.64 Total: -76.28 kcal Atomic # 8 Polarization: -58.92 SS G_CDS: -4.63 Total: -63.55 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.05 Total: 52.25 kcal Atomic # 16 Polarization: 56.33 SS G_CDS: -0.34 Total: 55.99 kcal Total: -76.53 -2.28 -78.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109767367.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.342 kcal (2) G-P(sol) polarization free energy of solvation -76.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds