Wall clock time and date at job start Mon Mar 30 2020 01:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 S 1.81408 * 109.46799 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54035 * 291.62208 * 11 10 9 13 13 O 1.42098 * 110.54418 * 68.37375 * 11 10 9 14 14 N 1.65603 * 104.44779 * 180.02562 * 11 10 9 15 15 C 1.46493 * 120.00153 * 64.99496 * 14 11 10 16 16 C 1.53000 * 109.47319 * 165.00136 * 15 14 11 17 17 H 1.09001 * 109.63817 * 304.58173 * 16 15 14 18 18 C 1.53024 * 109.64314 * 64.99787 * 16 15 14 19 19 C 1.50064 * 110.15022 * 169.11986 * 18 16 15 20 20 C 1.29439 * 124.07401 * 342.88057 * 19 18 16 21 21 C 1.50065 * 124.07843 * 0.47683 * 20 19 18 22 22 C 1.53034 * 110.14076 * 342.84322 * 21 20 19 23 23 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 25 25 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 26 26 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 27 27 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 28 28 H 0.96997 * 119.99647 * 245.00334 * 14 11 10 29 29 H 1.09005 * 109.47343 * 285.00229 * 15 14 11 30 30 H 1.08999 * 109.47569 * 45.00366 * 15 14 11 31 31 H 1.09003 * 109.36103 * 289.33622 * 18 16 15 32 32 H 1.09011 * 109.35597 * 49.05440 * 18 16 15 33 33 H 1.08006 * 117.96465 * 162.89315 * 19 18 16 34 34 H 1.08001 * 117.96046 * 180.46577 * 20 19 18 35 35 H 1.09010 * 109.35377 * 103.06154 * 21 20 19 36 36 H 1.08994 * 109.36257 * 222.77788 * 21 20 19 37 37 H 1.08999 * 109.65427 * 289.77373 * 22 21 20 38 38 H 1.08999 * 109.63947 * 169.13530 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 16 1.3383 -5.2331 -0.0013 12 8 0.6640 -5.4201 1.2355 13 8 0.6647 -5.4194 -1.2385 14 7 2.5206 -6.3927 -0.0005 15 6 3.4182 -6.5229 1.1499 16 6 4.1493 -7.8650 1.0770 17 1 3.4228 -8.6746 1.0082 18 6 5.0623 -7.8874 -0.1508 19 6 5.9766 -9.0759 -0.0936 20 6 6.2101 -9.7601 0.9801 21 6 5.5914 -9.4667 2.3154 22 6 5.0158 -8.0488 2.3293 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8897 26 1 2.8720 -3.6043 -0.8905 27 1 2.8720 -3.6043 0.8894 28 1 2.6187 -6.9857 -0.7618 29 1 4.1459 -5.7115 1.1366 30 1 2.8375 -6.4752 2.0711 31 1 4.4532 -7.9431 -1.0531 32 1 5.6594 -6.9756 -0.1738 33 1 6.4706 -9.3792 -1.0048 34 1 6.8927 -10.5942 0.9106 35 1 4.7928 -10.1831 2.5087 36 1 6.3507 -9.5538 3.0925 37 1 5.8289 -7.3230 2.3221 38 1 4.4047 -7.9103 3.2212 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111333858.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:43 Heat of formation + Delta-G solvation = -111.816226 kcal Electronic energy + Delta-G solvation = -19014.276857 eV Core-core repulsion = 15981.876709 eV Total energy + Delta-G solvation = -3032.400149 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.80256 -38.12628 -36.99617 -36.09458 -35.87663 -33.10600 -32.02379 -31.38081 -27.57414 -26.46863 -23.86968 -23.55081 -22.06520 -20.25043 -19.06860 -18.78436 -18.27200 -17.44807 -17.01906 -16.71189 -16.49836 -15.93258 -15.27864 -15.09715 -14.83653 -14.49014 -14.40706 -13.95579 -13.70529 -13.33712 -13.19557 -13.16480 -13.09188 -12.92010 -12.90510 -12.76033 -12.58589 -12.22344 -12.11401 -11.73589 -11.61244 -11.34729 -11.17660 -10.95915 -10.63655 -10.29475 -9.80283 -8.24963 -6.38928 -0.64076 1.41825 1.43631 1.47756 1.54725 1.90308 2.39012 2.84179 3.08561 3.29820 3.70926 3.81104 3.93231 4.04423 4.17443 4.24554 4.35775 4.50926 4.54624 4.62790 4.75036 4.77977 4.83263 4.87094 5.05279 5.08867 5.13915 5.21106 5.29593 5.30460 5.39253 5.52557 5.69735 5.84254 6.07487 6.13338 6.16472 6.75068 7.31283 8.87333 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026024 B = 0.003919 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.660759 B = 7143.218605 C = 7681.944321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.538 4.538 8 H 0.077 0.923 9 C 0.018 3.982 10 C -0.587 4.587 11 S 2.622 3.378 12 O -0.999 6.999 13 O -1.002 7.002 14 N -1.108 6.108 15 C 0.108 3.892 16 C -0.088 4.088 17 H 0.077 0.923 18 C -0.093 4.093 19 C -0.164 4.164 20 C -0.164 4.164 21 C -0.092 4.092 22 C -0.117 4.117 23 H 0.267 0.733 24 H 0.006 0.994 25 H 0.007 0.993 26 H 0.143 0.857 27 H 0.143 0.857 28 H 0.423 0.577 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.977 -18.038 2.677 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.577 4.577 8 H 0.095 0.905 9 C -0.021 4.021 10 C -0.719 4.719 11 S 2.718 3.282 12 O -0.989 6.989 13 O -0.992 6.992 14 N -0.870 5.870 15 C -0.017 4.017 16 C -0.109 4.109 17 H 0.095 0.905 18 C -0.130 4.130 19 C -0.182 4.182 20 C -0.182 4.182 21 C -0.129 4.129 22 C -0.155 4.155 23 H 0.076 0.924 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.161 0.839 27 H 0.161 0.839 28 H 0.260 0.740 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 13.868 -18.023 2.842 22.918 hybrid contribution 0.466 0.938 -0.500 1.161 sum 14.334 -17.085 2.342 22.424 Atomic orbital electron populations 1.70105 1.08095 1.28298 1.50964 1.26129 0.95852 1.03919 0.94432 0.85305 0.78667 0.77645 0.78586 1.19680 1.20926 1.18049 1.21532 0.94018 0.90789 1.51385 0.90525 1.18836 0.93685 0.93178 0.96363 1.30325 1.12745 1.16419 1.12422 1.04375 0.74691 0.76515 0.72594 1.93495 1.72843 1.85468 1.47104 1.93498 1.73252 1.85865 1.46587 1.55274 1.52398 1.50617 1.28688 1.21666 0.92740 0.99663 0.87674 1.21366 0.97010 0.95941 0.96536 0.90482 1.20589 0.96838 0.97564 0.97977 1.22166 0.99836 0.97592 0.98591 1.22230 1.00680 1.00290 0.95006 1.20479 1.00273 0.96597 0.95506 1.21658 0.99331 0.97533 0.96989 0.92428 0.97612 0.97466 0.83866 0.83869 0.74032 0.89723 0.90655 0.90572 0.89954 0.87421 0.87311 0.90673 0.89929 0.90879 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.96 13.29 21.45 0.28 -56.68 16 2 C -0.01 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 43.09 29.54 68.60 2.03 45.11 16 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 7 C -0.54 -29.65 9.11 25.60 0.23 -29.42 16 8 H 0.08 3.87 7.74 -2.91 -0.02 3.85 16 9 C 0.02 0.95 4.98 29.85 0.15 1.10 16 10 C -0.59 -21.56 6.01 71.98 0.43 -21.13 16 11 S 2.62 91.50 5.46 -56.49 -0.31 91.20 16 12 O -1.00 -41.47 17.49 -127.65 -2.23 -43.70 16 13 O -1.00 -41.65 18.08 -127.65 -2.31 -43.96 16 14 N -1.11 -25.95 5.77 -187.50 -1.08 -27.03 16 15 C 0.11 2.10 5.53 86.38 0.48 2.58 16 16 C -0.09 -1.40 2.35 -10.66 -0.03 -1.42 16 17 H 0.08 1.30 8.13 -2.39 -0.02 1.28 16 18 C -0.09 -1.36 5.17 29.66 0.15 -1.20 16 19 C -0.16 -2.33 9.80 27.04 0.27 -2.07 16 20 C -0.16 -2.20 9.80 27.04 0.27 -1.94 16 21 C -0.09 -1.13 6.12 29.66 0.18 -0.95 16 22 C -0.12 -1.59 5.31 30.74 0.16 -1.43 16 23 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 24 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 25 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.14 4.57 8.14 -2.39 -0.02 4.56 16 27 H 0.14 4.50 8.14 -2.39 -0.02 4.48 16 28 H 0.42 8.23 7.54 -96.75 -0.73 7.50 16 29 H 0.08 1.36 8.11 -2.38 -0.02 1.34 16 30 H 0.08 1.59 7.69 -2.39 -0.02 1.58 16 31 H 0.08 1.06 7.21 -2.39 -0.02 1.04 16 32 H 0.08 1.15 8.08 -2.38 -0.02 1.13 16 33 H 0.11 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.11 1.23 8.06 -2.91 -0.02 1.21 16 35 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 38 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -74.66 324.63 -0.56 -75.22 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.30 Total: 15.53 kcal Atomic # 6 Polarization: -58.45 SS G_CDS: 2.76 Total: -55.69 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -0.80 Total: -83.71 kcal Atomic # 8 Polarization: -83.12 SS G_CDS: -4.54 Total: -87.66 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 91.50 SS G_CDS: -0.31 Total: 91.20 kcal Total: -74.66 -0.56 -75.22 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111333858.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.595 kcal (2) G-P(sol) polarization free energy of solvation -74.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds