Wall clock time and date at job start Mon Mar 30 2020 01:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00212 * 2 1 4 4 C 1.53045 * 109.46042 * 240.00040 * 3 2 1 5 5 C 1.53192 * 109.31029 * 178.62847 * 4 3 2 6 6 N 1.46923 * 108.77662 * 54.63529 * 5 4 3 7 7 S 1.65606 * 120.62889 * 126.36777 * 6 5 4 8 8 O 1.42094 * 104.27817 * 333.92814 * 7 6 5 9 9 O 1.42106 * 104.27580 * 206.07045 * 7 6 5 10 10 C 1.81396 * 104.45103 * 90.00030 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.46931 * 118.74107 * 306.64334 * 6 5 4 21 21 C 1.52760 * 109.00482 * 53.30564 * 20 6 5 22 22 H 1.07997 * 119.99526 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.00070 * 179.97438 * 1 2 3 24 24 H 1.08005 * 119.99684 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.45921 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.49463 * 58.67649 * 4 3 2 27 27 H 1.08998 * 109.51984 * 298.59451 * 4 3 2 28 28 H 1.09004 * 109.58820 * 294.84560 * 5 4 3 29 29 H 1.08997 * 109.70082 * 174.49376 * 5 4 3 30 30 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 31 31 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 32 32 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 33 33 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.58620 * 173.14734 * 20 6 5 36 36 H 1.09000 * 109.58287 * 293.56713 * 20 6 5 37 37 H 1.09000 * 109.55779 * 185.55242 * 21 20 6 38 38 H 1.09003 * 109.35959 * 65.50545 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9433 1.3858 -1.2497 5 6 3.6815 2.7281 -1.2636 6 7 4.4143 2.8779 0.0009 7 16 6.0370 3.2085 0.0017 8 8 6.5019 2.6850 -1.2348 9 8 6.5006 2.6858 1.2391 10 6 6.1300 5.0201 0.0011 11 6 7.5966 5.4556 0.0024 12 6 7.6738 6.9606 0.0012 13 1 6.7674 7.5478 0.0002 14 6 8.9016 7.5880 0.0026 15 7 10.0053 6.8729 0.0044 16 14 8.9972 9.4535 0.0020 17 1 8.3219 9.9842 1.2135 18 1 10.4208 9.8762 0.0031 19 1 8.3250 9.9832 -1.2116 20 6 3.6814 2.7228 1.2649 21 6 2.9421 1.3862 1.2505 22 1 -0.5399 0.9353 0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3551 2.1334 -0.0005 26 1 2.3193 1.3044 -2.1397 27 1 3.6683 0.5720 -1.2379 28 1 2.9616 3.5400 -1.3672 29 1 4.3829 2.7530 -2.0976 30 1 5.6349 5.4096 0.8907 31 1 5.6358 5.4089 -0.8892 32 1 8.0921 5.0661 -0.8870 33 1 8.0903 5.0667 0.8930 34 1 10.8691 7.3143 0.0050 35 1 4.3830 2.7419 2.0988 36 1 2.9615 3.5343 1.3717 37 1 2.3173 1.3051 2.1400 38 1 3.6671 0.5723 1.2392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111348859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:18 Heat of formation + Delta-G solvation = -71.441726 kcal Electronic energy + Delta-G solvation = -19418.444182 eV Core-core repulsion = 16387.794803 eV Total energy + Delta-G solvation = -3030.649379 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -38.88814 -36.65063 -35.43678 -34.76500 -33.87987 -31.15597 -31.15112 -30.72282 -25.60620 -24.60585 -23.40303 -21.59396 -20.64719 -20.00768 -18.45180 -17.60313 -16.53397 -15.86312 -15.46656 -15.14368 -14.61353 -14.56970 -14.55870 -14.21633 -13.90599 -13.35591 -13.03237 -12.54369 -12.48847 -12.33964 -11.75066 -11.61098 -11.55360 -11.46934 -11.22660 -11.06462 -10.98825 -10.96249 -10.94637 -10.45829 -10.36969 -10.36883 -9.75068 -9.50894 -9.32724 -8.74849 -8.50017 -6.12198 -4.17934 0.77135 2.05994 3.04219 3.27224 3.31989 3.33854 4.29800 4.38714 4.49049 4.56784 4.57615 4.87690 4.97863 5.09169 5.09944 5.22785 5.26805 5.30174 5.53150 5.59397 5.61517 5.62667 5.74454 5.77179 5.81730 5.88522 5.99100 6.18044 6.22137 6.40870 6.50043 6.58216 6.72053 7.30252 7.36504 7.80574 8.17913 8.85286 9.46740 10.98819 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041831 B = 0.003937 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.205929 B = 7109.913374 C = 7261.160595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.061 4.061 4 C -0.122 4.122 5 C 0.118 3.882 6 N -1.007 6.007 7 S 2.590 3.410 8 O -0.965 6.965 9 O -0.965 6.965 10 C -0.589 4.589 11 C 0.028 3.972 12 C -0.521 4.521 13 H 0.061 0.939 14 C 0.058 3.942 15 N -0.891 5.891 16 Si 0.901 3.099 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.275 1.275 20 C 0.118 3.882 21 C -0.123 4.123 22 H 0.095 0.905 23 H 0.095 0.905 24 H 0.107 0.893 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.118 0.882 31 H 0.118 0.882 32 H 0.033 0.967 33 H 0.033 0.967 34 H 0.266 0.734 35 H 0.096 0.904 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.087 -10.294 -0.007 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.161 4.161 3 C -0.080 4.080 4 C -0.161 4.161 5 C -0.008 4.008 6 N -0.843 5.843 7 S 2.689 3.311 8 O -0.955 6.955 9 O -0.955 6.955 10 C -0.722 4.722 11 C -0.011 4.011 12 C -0.561 4.561 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.529 5.529 16 Si 0.728 3.272 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.201 1.201 20 C -0.008 4.008 21 C -0.162 4.162 22 H 0.113 0.887 23 H 0.113 0.887 24 H 0.125 0.875 25 H 0.094 0.906 26 H 0.091 0.909 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.211 -10.966 -0.006 20.408 hybrid contribution -0.283 1.561 -0.001 1.586 sum -17.494 -9.405 -0.006 19.862 Atomic orbital electron populations 1.23821 0.95903 1.01664 1.02069 1.22993 0.95847 0.98366 0.98861 1.20347 0.96692 0.95430 0.95506 1.21862 0.98657 0.98201 0.97398 1.21400 0.96487 0.97120 0.85770 1.57952 1.28317 1.86887 1.11191 1.05680 0.72102 0.79216 0.74068 1.93522 1.78430 1.78130 1.45424 1.93524 1.78468 1.78164 1.45350 1.30493 1.10335 1.21427 1.09980 1.18960 0.84503 0.98816 0.98827 1.20975 0.92588 0.90251 1.52267 0.92103 1.25071 0.95658 0.98859 0.94893 1.69945 0.97694 1.35745 1.49485 0.86524 0.77145 0.84854 0.78704 1.20071 1.21062 1.20076 1.21314 0.96487 0.97164 0.85806 1.21793 0.98667 0.98276 0.97422 0.88672 0.88707 0.87479 0.90633 0.90866 0.91185 0.91624 0.88623 0.86311 0.86314 0.94887 0.94884 0.92462 0.88611 0.91645 0.90829 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 14.32 29.01 0.42 -1.07 16 2 C -0.14 -1.20 8.77 -36.03 -0.32 -1.52 16 3 C -0.06 -0.56 2.44 -91.73 -0.22 -0.78 16 4 C -0.12 -1.23 5.34 -26.61 -0.14 -1.37 16 5 C 0.12 1.35 6.43 -3.71 -0.02 1.33 16 6 N -1.01 -13.69 3.23 -113.77 -0.37 -14.06 16 7 S 2.59 47.00 5.45 -107.50 -0.59 46.42 16 8 O -0.96 -20.00 16.59 -57.54 -0.95 -20.96 16 9 O -0.96 -20.00 16.58 -57.54 -0.95 -20.96 16 10 C -0.59 -11.36 6.12 37.16 0.23 -11.13 16 11 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 12 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 16 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 20 C 0.12 1.36 6.40 -3.93 -0.03 1.33 16 21 C -0.12 -1.23 5.33 -26.83 -0.14 -1.37 16 22 H 0.09 0.66 7.83 -52.49 -0.41 0.25 16 23 H 0.09 0.62 8.06 -52.49 -0.42 0.19 16 24 H 0.11 0.88 8.06 -52.48 -0.42 0.45 16 25 H 0.08 0.64 7.78 -51.93 -0.40 0.24 16 26 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.10 1.18 6.86 -51.93 -0.36 0.83 16 30 H 0.12 2.06 8.14 -51.92 -0.42 1.64 16 31 H 0.12 2.06 8.14 -51.93 -0.42 1.64 16 32 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.10 1.18 6.85 -51.93 -0.36 0.83 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 323.61 15.07 4.88 4.88 Total: -1.00 -33.73 323.61 -9.19 -42.93 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.14 Total: -1.32 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: -0.78 Total: -27.27 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.37 Total: -39.93 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.91 Total: -41.91 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 47.00 SS G_CDS: -0.59 Total: 46.42 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.73 -9.19 -42.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111348859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.514 kcal (2) G-P(sol) polarization free energy of solvation -33.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds