Wall clock time and date at job start Mon Mar 30 2020 01:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50693 * 120.00212 * 2 1 4 4 C 1.53045 * 109.46042 * 240.00040 * 3 2 1 5 5 C 1.53192 * 109.31029 * 178.62847 * 4 3 2 6 6 N 1.46923 * 108.77662 * 54.63529 * 5 4 3 7 7 S 1.65606 * 120.62889 * 126.36777 * 6 5 4 8 8 O 1.42094 * 104.27817 * 333.92814 * 7 6 5 9 9 O 1.42106 * 104.27580 * 206.07045 * 7 6 5 10 10 C 1.81396 * 104.45103 * 90.00030 * 7 6 5 11 11 C 1.52997 * 109.47360 * 179.97438 * 10 7 6 12 12 C 1.50701 * 109.47212 * 179.97438 * 11 10 7 13 13 H 1.07998 * 120.00129 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99861 * 179.97438 * 12 11 10 15 15 N 1.31510 * 119.99913 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99734 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47294 * 60.00559 * 16 14 12 18 18 H 1.48503 * 109.46954 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47431 * 300.00157 * 16 14 12 20 20 C 1.46931 * 118.74107 * 306.64334 * 6 5 4 21 21 C 1.52760 * 109.00482 * 53.30564 * 20 6 5 22 22 H 1.07997 * 119.99526 * 359.97438 * 1 2 3 23 23 H 1.07998 * 120.00070 * 179.97438 * 1 2 3 24 24 H 1.08005 * 119.99684 * 179.97438 * 2 1 3 25 25 H 1.09002 * 109.45921 * 359.97438 * 3 2 1 26 26 H 1.08998 * 109.49463 * 58.67649 * 4 3 2 27 27 H 1.08998 * 109.51984 * 298.59451 * 4 3 2 28 28 H 1.09004 * 109.58820 * 294.84560 * 5 4 3 29 29 H 1.08997 * 109.70082 * 174.49376 * 5 4 3 30 30 H 1.09002 * 109.47134 * 59.99751 * 10 7 6 31 31 H 1.08998 * 109.46953 * 300.00489 * 10 7 6 32 32 H 1.09002 * 109.47153 * 59.99820 * 11 10 7 33 33 H 1.09001 * 109.46832 * 300.00011 * 11 10 7 34 34 H 0.97002 * 119.99768 * 179.97438 * 15 14 12 35 35 H 1.08996 * 109.58620 * 173.14734 * 20 6 5 36 36 H 1.09000 * 109.58287 * 293.56713 * 20 6 5 37 37 H 1.09000 * 109.55779 * 185.55242 * 21 20 6 38 38 H 1.09003 * 109.35959 * 65.50545 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9433 1.3858 -1.2497 5 6 3.6815 2.7281 -1.2636 6 7 4.4143 2.8779 0.0009 7 16 6.0370 3.2085 0.0017 8 8 6.5019 2.6850 -1.2348 9 8 6.5006 2.6858 1.2391 10 6 6.1300 5.0201 0.0011 11 6 7.5966 5.4556 0.0024 12 6 7.6738 6.9606 0.0012 13 1 6.7674 7.5478 0.0002 14 6 8.9016 7.5880 0.0026 15 7 10.0053 6.8729 0.0044 16 14 8.9972 9.4535 0.0020 17 1 8.3219 9.9842 1.2135 18 1 10.4208 9.8762 0.0031 19 1 8.3250 9.9832 -1.2116 20 6 3.6814 2.7228 1.2649 21 6 2.9421 1.3862 1.2505 22 1 -0.5399 0.9353 0.0004 23 1 -0.5400 -0.9353 -0.0004 24 1 1.8500 -0.9354 0.0004 25 1 1.3551 2.1334 -0.0005 26 1 2.3193 1.3044 -2.1397 27 1 3.6683 0.5720 -1.2379 28 1 2.9616 3.5400 -1.3672 29 1 4.3829 2.7530 -2.0976 30 1 5.6349 5.4096 0.8907 31 1 5.6358 5.4089 -0.8892 32 1 8.0921 5.0661 -0.8870 33 1 8.0903 5.0667 0.8930 34 1 10.8691 7.3143 0.0050 35 1 4.3830 2.7419 2.0988 36 1 2.9615 3.5343 1.3717 37 1 2.3173 1.3051 2.1400 38 1 3.6671 0.5723 1.2392 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111348859.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:18 Heat of formation + Delta-G solvation = -94.267377 kcal Electronic energy + Delta-G solvation = -19419.433977 eV Core-core repulsion = 16387.794803 eV Total energy + Delta-G solvation = -3031.639173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.73983 -38.22870 -37.00979 -35.90090 -35.57994 -33.12840 -32.01510 -31.51754 -27.59367 -25.51106 -24.26958 -23.50103 -21.57166 -20.64379 -19.74939 -19.08470 -18.37128 -17.21534 -17.05074 -16.55025 -15.86568 -15.80729 -15.31576 -15.14879 -15.08205 -14.74624 -14.48277 -13.95150 -13.71850 -13.57547 -13.19581 -13.12421 -12.91459 -12.89582 -12.80490 -12.56918 -12.24083 -12.15893 -12.09811 -11.77108 -11.76785 -11.67494 -11.26761 -11.09013 -10.64745 -10.13312 -9.88320 -8.26554 -6.41232 -0.70574 1.40552 1.44317 1.47141 1.52530 1.76205 2.37893 2.86598 3.06517 3.18344 3.64164 3.80835 4.01170 4.01550 4.13454 4.24015 4.26816 4.44395 4.48713 4.52205 4.74619 4.79284 4.84900 4.86425 4.92371 5.03900 5.15195 5.20081 5.25599 5.26305 5.30246 5.45814 5.67303 5.73214 5.82690 5.97126 6.05301 6.72356 7.29115 8.85577 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041831 B = 0.003937 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.205929 B = 7109.913374 C = 7261.160595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.158 4.158 3 C -0.056 4.056 4 C -0.121 4.121 5 C 0.108 3.892 6 N -0.997 5.997 7 S 2.611 3.389 8 O -0.995 6.995 9 O -0.995 6.995 10 C -0.586 4.586 11 C 0.020 3.980 12 C -0.542 4.542 13 H 0.076 0.924 14 C -0.005 4.005 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.262 1.262 18 H -0.284 1.284 19 H -0.262 1.262 20 C 0.108 3.892 21 C -0.122 4.122 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.005 0.995 33 H 0.005 0.995 34 H 0.268 0.732 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.162 -9.183 -0.008 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.176 4.176 3 C -0.075 4.075 4 C -0.160 4.160 5 C -0.016 4.016 6 N -0.836 5.836 7 S 2.710 3.290 8 O -0.986 6.986 9 O -0.986 6.986 10 C -0.718 4.718 11 C -0.019 4.019 12 C -0.580 4.580 13 H 0.094 0.906 14 C -0.203 4.203 15 N -0.574 5.574 16 Si 0.799 3.201 17 H -0.187 1.187 18 H -0.210 1.210 19 H -0.187 1.187 20 C -0.016 4.016 21 C -0.161 4.161 22 H 0.123 0.877 23 H 0.122 0.878 24 H 0.121 0.879 25 H 0.110 0.890 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.159 0.841 31 H 0.159 0.841 32 H 0.023 0.977 33 H 0.023 0.977 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.115 0.885 37 H 0.112 0.888 38 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -20.294 -9.851 -0.007 22.558 hybrid contribution 0.582 1.120 0.000 1.262 sum -19.712 -8.730 -0.007 21.559 Atomic orbital electron populations 1.23991 0.95550 1.02592 1.00153 1.22932 0.96219 0.97908 1.00591 1.20316 0.96509 0.96455 0.94174 1.21877 0.98580 0.96542 0.99039 1.21709 0.96624 0.99228 0.84066 1.57580 1.26633 1.86278 1.13135 1.04717 0.73286 0.78333 0.72672 1.93475 1.80035 1.78415 1.46647 1.93477 1.80072 1.78449 1.46575 1.30385 1.06181 1.23073 1.12180 1.18819 0.88461 0.98385 0.96200 1.21504 0.93356 0.91457 1.51717 0.90550 1.26148 0.95244 1.04605 0.94299 1.70101 0.98420 1.38155 1.50774 0.85343 0.77277 0.77989 0.79516 1.18685 1.20963 1.18694 1.21620 0.96617 0.99275 0.84102 1.21808 0.98590 0.96613 0.99063 0.87728 0.87821 0.87936 0.89023 0.88866 0.93025 0.88470 0.89915 0.84103 0.84102 0.97691 0.97685 0.92356 0.89914 0.88493 0.88820 0.93046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.22 14.32 67.78 0.97 -1.25 16 2 C -0.16 -2.29 8.77 25.64 0.22 -2.07 16 3 C -0.06 -0.87 2.44 -11.51 -0.03 -0.90 16 4 C -0.12 -2.20 5.34 30.67 0.16 -2.03 16 5 C 0.11 2.27 6.43 86.36 0.56 2.82 16 6 N -1.00 -25.78 3.23 -513.85 -1.66 -27.44 16 7 S 2.61 95.97 5.45 -56.49 -0.31 95.66 16 8 O -1.00 -42.45 16.59 -127.65 -2.12 -44.57 16 9 O -1.00 -42.45 16.58 -127.65 -2.12 -44.57 16 10 C -0.59 -22.43 6.12 71.98 0.44 -21.99 16 11 C 0.02 1.07 4.98 29.85 0.15 1.22 16 12 C -0.54 -30.27 9.11 25.60 0.23 -30.04 16 13 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 14 C 0.00 -0.26 5.46 84.66 0.46 0.20 16 15 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 16 Si 0.98 43.33 29.54 68.60 2.03 45.35 16 17 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 20 C 0.11 2.27 6.40 86.22 0.55 2.82 16 21 C -0.12 -2.20 5.33 30.53 0.16 -2.04 16 22 H 0.10 1.06 7.83 -2.91 -0.02 1.04 16 23 H 0.10 1.05 8.06 -2.91 -0.02 1.02 16 24 H 0.10 1.55 8.06 -2.91 -0.02 1.53 16 25 H 0.09 1.17 7.78 -2.39 -0.02 1.15 16 26 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 1.46 8.14 -2.38 -0.02 1.44 16 29 H 0.08 1.97 6.86 -2.39 -0.02 1.95 16 30 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 31 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 32 H 0.00 0.27 8.14 -2.39 -0.02 0.26 16 33 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 35 H 0.08 1.97 6.85 -2.39 -0.02 1.96 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -74.62 323.61 1.01 -73.62 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 1.01 Total: 12.32 kcal Atomic # 6 Polarization: -57.13 SS G_CDS: 3.89 Total: -53.25 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -1.37 Total: -84.56 kcal Atomic # 8 Polarization: -84.91 SS G_CDS: -4.23 Total: -89.14 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 95.97 SS G_CDS: -0.31 Total: 95.66 kcal Total: -74.62 1.01 -73.62 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111348859.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.652 kcal (2) G-P(sol) polarization free energy of solvation -74.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds