Wall clock time and date at job start Mon Mar 30 2020 01:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46807 * 2 1 4 4 O 1.33824 * 125.08792 * 269.97712 * 3 2 1 5 5 C 1.34916 * 111.35747 * 180.02562 * 4 3 2 6 6 C 1.38969 * 133.10078 * 179.97438 * 5 4 3 7 7 C 1.37843 * 119.97774 * 180.02562 * 6 5 4 8 8 C 1.38683 * 120.64934 * 0.02562 * 7 6 5 9 9 C 1.37851 * 120.20043 * 0.02562 * 8 7 6 10 10 C 1.39099 * 119.63177 * 359.97438 * 9 8 7 11 11 C 1.36140 * 125.08453 * 89.99988 * 3 2 1 12 12 C 1.46997 * 127.14558 * 0.02562 * 11 3 2 13 13 O 1.21678 * 119.99304 * 269.97588 * 12 11 3 14 14 N 1.34768 * 120.00176 * 89.97744 * 12 11 3 15 15 C 1.46506 * 120.00011 * 0.02562 * 14 12 11 16 16 C 1.36952 * 120.00119 * 179.97438 * 14 12 11 17 17 H 1.08002 * 119.99946 * 24.29825 * 16 14 12 18 18 C 1.38977 * 120.00335 * 204.29806 * 16 14 12 19 19 N 1.31416 * 119.99788 * 12.91411 * 18 16 14 20 20 Si 1.86797 * 120.00046 * 192.92410 * 18 16 14 21 21 H 1.48496 * 109.47508 * 89.99521 * 20 18 16 22 22 H 1.48501 * 109.47075 * 209.99625 * 20 18 16 23 23 H 1.48507 * 109.47142 * 329.99054 * 20 18 16 24 24 H 1.08998 * 109.47783 * 60.00004 * 1 2 3 25 25 H 1.09003 * 109.46921 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47453 * 299.99367 * 1 2 3 27 27 H 1.08996 * 109.47062 * 240.00830 * 2 1 3 28 28 H 1.08998 * 109.47783 * 119.99996 * 2 1 3 29 29 H 1.08000 * 120.01074 * 359.97438 * 6 5 4 30 30 H 1.07994 * 119.67763 * 180.27410 * 7 6 5 31 31 H 1.08003 * 119.89612 * 179.97438 * 8 7 6 32 32 H 1.08003 * 120.18090 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.47091 * 86.07740 * 15 14 12 34 34 H 1.09003 * 109.46648 * 206.07609 * 15 14 12 35 35 H 1.08995 * 109.47186 * 326.07413 * 15 14 12 36 36 H 0.97002 * 119.99890 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2890 2.1460 -1.0950 5 6 2.7262 3.3815 -0.7748 6 6 3.1148 4.4779 -1.5351 7 6 3.5254 5.6372 -0.9125 8 6 3.5563 5.7236 0.4713 9 6 3.1755 4.6460 1.2421 10 6 2.7594 3.4713 0.6242 11 6 2.2930 2.1586 1.1140 12 6 2.1440 1.7355 2.5139 13 8 1.0887 1.9116 3.0935 14 7 3.1760 1.1525 3.1552 15 6 4.4467 0.9410 2.4573 16 6 3.0374 0.7587 4.4595 17 1 2.0567 0.5422 4.8569 18 6 4.1585 0.6378 5.2719 19 7 5.3099 1.1361 4.8811 20 14 4.0287 -0.2335 6.9191 21 1 4.3108 -1.6801 6.7376 22 1 5.0141 0.3481 7.8657 23 1 2.6579 -0.0610 7.4637 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.0960 4.4215 -2.6135 30 1 3.8222 6.4878 -1.5080 31 1 3.8805 6.6377 0.9465 32 1 3.1993 4.7138 2.3197 33 1 5.0602 1.8382 2.5396 34 1 4.9725 0.0988 2.9073 35 1 4.2529 0.7285 1.4060 36 1 6.0925 1.0514 5.4479 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125357844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:43 Heat of formation + Delta-G solvation = -3.332457 kcal Electronic energy + Delta-G solvation = -21091.558223 eV Core-core repulsion = 17928.418333 eV Total energy + Delta-G solvation = -3163.139891 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.18944 -38.21928 -37.65559 -34.66460 -33.90036 -32.09998 -31.40183 -30.12215 -28.43548 -26.31405 -24.92220 -23.98103 -22.56505 -22.10506 -20.85636 -18.87399 -17.12514 -16.78799 -16.62539 -15.97332 -15.45126 -15.20546 -14.44490 -14.24102 -14.01711 -13.87837 -13.65686 -13.45331 -12.83035 -12.47267 -12.34348 -11.91486 -11.85803 -11.60541 -11.44880 -11.28818 -11.25530 -10.93603 -10.87976 -10.55571 -10.37994 -10.34289 -9.64233 -9.03726 -8.59837 -8.37343 -7.73107 -7.67458 -6.36106 -3.92449 1.15343 1.58202 2.54912 2.90166 3.13521 3.23587 3.29091 3.72022 3.95745 4.12278 4.62928 4.77207 5.04459 5.09704 5.11283 5.23812 5.40388 5.41194 5.44681 5.59430 5.69246 5.76617 5.93722 5.98913 6.14028 6.14888 6.37939 6.40886 6.45734 6.54382 6.65580 6.73474 6.86315 6.91533 7.20112 7.45854 7.53266 8.10618 8.45303 9.13358 9.36986 9.95265 10.68510 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.006465 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.367564 B = 4329.890348 C = 5228.895013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.045 4.045 3 C 0.049 3.951 4 O -0.190 6.190 5 C 0.048 3.952 6 C -0.111 4.111 7 C -0.100 4.100 8 C -0.139 4.139 9 C -0.059 4.059 10 C -0.097 4.097 11 C -0.170 4.170 12 C 0.510 3.490 13 O -0.580 6.580 14 N -0.431 5.431 15 C 0.116 3.884 16 C -0.309 4.309 17 H 0.100 0.900 18 C 0.032 3.968 19 N -0.877 5.877 20 Si 0.927 3.073 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.268 1.268 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.024 0.976 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.881 2.460 -11.665 11.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 C 0.001 3.999 4 O -0.092 6.092 5 C 0.001 3.999 6 C -0.130 4.130 7 C -0.119 4.119 8 C -0.158 4.158 9 C -0.078 4.078 10 C -0.099 4.099 11 C -0.175 4.175 12 C 0.298 3.702 13 O -0.465 6.465 14 N -0.148 5.148 15 C -0.028 4.028 16 C -0.437 4.437 17 H 0.118 0.882 18 C -0.172 4.172 19 N -0.516 5.516 20 Si 0.754 3.246 21 H -0.203 1.203 22 H -0.209 1.209 23 H -0.193 1.193 24 H 0.074 0.926 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.101 0.899 28 H 0.118 0.882 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.042 0.958 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.203 2.444 -11.541 11.858 hybrid contribution 0.346 -0.222 0.887 0.977 sum -0.856 2.222 -10.654 10.917 Atomic orbital electron populations 1.21776 0.93471 1.02325 1.03062 1.20216 0.96924 0.86724 1.04344 1.22566 1.00395 0.94351 0.82617 1.83709 1.69589 1.21825 1.34093 1.19529 1.01559 0.85418 0.93386 1.19818 1.03826 0.90139 0.99213 1.20814 0.99759 0.96584 0.94694 1.20990 1.02447 0.98688 0.93632 1.20633 0.95760 0.90773 1.00585 1.19642 1.03009 0.94667 0.92546 1.21080 1.07542 0.93446 0.95402 1.16911 0.86061 0.82869 0.84398 1.90640 1.28361 1.59706 1.67819 1.43499 1.10354 1.49697 1.11246 1.21434 0.86426 1.02671 0.92304 1.19663 0.95369 1.42836 0.85827 0.88205 1.25386 0.95242 0.96968 0.99562 1.70018 1.00737 1.42262 1.38539 0.85906 0.78456 0.79149 0.81096 1.20283 1.20907 1.19260 0.92574 0.91602 0.91151 0.89898 0.88249 0.85424 0.85112 0.85461 0.85288 0.92993 0.90686 0.95786 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.89 37.16 0.37 -1.75 16 2 C -0.04 -0.69 6.26 -27.88 -0.17 -0.87 16 3 C 0.05 0.92 6.22 -35.06 -0.22 0.71 16 4 O -0.19 -3.40 10.53 5.27 0.06 -3.34 16 5 C 0.05 0.85 7.39 -38.56 -0.28 0.56 16 6 C -0.11 -1.57 10.06 -39.46 -0.40 -1.96 16 7 C -0.10 -1.27 10.01 -39.56 -0.40 -1.67 16 8 C -0.14 -2.00 10.04 -39.56 -0.40 -2.39 16 9 C -0.06 -1.09 10.09 -39.40 -0.40 -1.49 16 10 C -0.10 -1.95 6.39 -104.98 -0.67 -2.62 16 11 C -0.17 -3.72 4.36 -103.25 -0.45 -4.17 16 12 C 0.51 13.15 7.01 -12.72 -0.09 13.06 16 13 O -0.58 -16.84 16.82 5.21 0.09 -16.75 16 14 N -0.43 -11.30 3.01 -123.57 -0.37 -11.67 16 15 C 0.12 2.71 8.46 59.85 0.51 3.22 16 16 C -0.31 -8.61 9.24 -14.99 -0.14 -8.75 16 17 H 0.10 2.89 7.44 -52.49 -0.39 2.50 16 18 C 0.03 0.85 5.04 -17.46 -0.09 0.76 16 19 N -0.88 -23.39 10.84 55.50 0.60 -22.79 16 20 Si 0.93 20.55 29.57 -169.99 -5.03 15.52 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 24 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.10 1.65 7.86 -51.93 -0.41 1.24 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 31 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.13 2.48 8.06 -52.48 -0.42 2.06 16 33 H 0.05 1.27 7.81 -51.93 -0.41 0.87 16 34 H 0.07 1.80 6.82 -51.93 -0.35 1.45 16 35 H 0.02 0.50 6.79 -51.93 -0.35 0.14 16 36 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 312.37 15.07 4.71 4.71 Total: -1.00 -31.93 312.37 -7.20 -39.13 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.43 Total: 2.54 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -2.83 Total: -7.35 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.23 Total: -34.46 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: 0.14 Total: -20.09 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.93 -7.20 -39.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125357844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.799 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds