Wall clock time and date at job start Mon Mar 30 2020 01:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46807 * 2 1 4 4 O 1.33824 * 125.08792 * 269.97712 * 3 2 1 5 5 C 1.34916 * 111.35747 * 180.02562 * 4 3 2 6 6 C 1.38969 * 133.10078 * 179.97438 * 5 4 3 7 7 C 1.37843 * 119.97774 * 180.02562 * 6 5 4 8 8 C 1.38683 * 120.64934 * 0.02562 * 7 6 5 9 9 C 1.37851 * 120.20043 * 0.02562 * 8 7 6 10 10 C 1.39099 * 119.63177 * 359.97438 * 9 8 7 11 11 C 1.36140 * 125.08453 * 89.99988 * 3 2 1 12 12 C 1.46997 * 127.14558 * 0.02562 * 11 3 2 13 13 O 1.21678 * 119.99304 * 269.97588 * 12 11 3 14 14 N 1.34768 * 120.00176 * 89.97744 * 12 11 3 15 15 C 1.46506 * 120.00011 * 0.02562 * 14 12 11 16 16 C 1.36952 * 120.00119 * 179.97438 * 14 12 11 17 17 H 1.08002 * 119.99946 * 24.29825 * 16 14 12 18 18 C 1.38977 * 120.00335 * 204.29806 * 16 14 12 19 19 N 1.31416 * 119.99788 * 12.91411 * 18 16 14 20 20 Si 1.86797 * 120.00046 * 192.92410 * 18 16 14 21 21 H 1.48496 * 109.47508 * 89.99521 * 20 18 16 22 22 H 1.48501 * 109.47075 * 209.99625 * 20 18 16 23 23 H 1.48507 * 109.47142 * 329.99054 * 20 18 16 24 24 H 1.08998 * 109.47783 * 60.00004 * 1 2 3 25 25 H 1.09003 * 109.46921 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47453 * 299.99367 * 1 2 3 27 27 H 1.08996 * 109.47062 * 240.00830 * 2 1 3 28 28 H 1.08998 * 109.47783 * 119.99996 * 2 1 3 29 29 H 1.08000 * 120.01074 * 359.97438 * 6 5 4 30 30 H 1.07994 * 119.67763 * 180.27410 * 7 6 5 31 31 H 1.08003 * 119.89612 * 179.97438 * 8 7 6 32 32 H 1.08003 * 120.18090 * 180.02562 * 9 8 7 33 33 H 1.09000 * 109.47091 * 86.07740 * 15 14 12 34 34 H 1.09003 * 109.46648 * 206.07609 * 15 14 12 35 35 H 1.08995 * 109.47186 * 326.07413 * 15 14 12 36 36 H 0.97002 * 119.99890 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 2.2890 2.1460 -1.0950 5 6 2.7262 3.3815 -0.7748 6 6 3.1148 4.4779 -1.5351 7 6 3.5254 5.6372 -0.9125 8 6 3.5563 5.7236 0.4713 9 6 3.1755 4.6460 1.2421 10 6 2.7594 3.4713 0.6242 11 6 2.2930 2.1586 1.1140 12 6 2.1440 1.7355 2.5139 13 8 1.0887 1.9116 3.0935 14 7 3.1760 1.1525 3.1552 15 6 4.4467 0.9410 2.4573 16 6 3.0374 0.7587 4.4595 17 1 2.0567 0.5422 4.8569 18 6 4.1585 0.6378 5.2719 19 7 5.3099 1.1361 4.8811 20 14 4.0287 -0.2335 6.9191 21 1 4.3108 -1.6801 6.7376 22 1 5.0141 0.3481 7.8657 23 1 2.6579 -0.0610 7.4637 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5137 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 3.0960 4.4215 -2.6135 30 1 3.8222 6.4878 -1.5080 31 1 3.8805 6.6377 0.9465 32 1 3.1993 4.7138 2.3197 33 1 5.0602 1.8382 2.5396 34 1 4.9725 0.0988 2.9073 35 1 4.2529 0.7285 1.4060 36 1 6.0925 1.0514 5.4479 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125357844.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:42 Heat of formation + Delta-G solvation = -22.337704 kcal Electronic energy + Delta-G solvation = -21092.382353 eV Core-core repulsion = 17928.418333 eV Total energy + Delta-G solvation = -3163.964020 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.57526 -40.21564 -38.88175 -36.73500 -35.27253 -33.80012 -33.09798 -31.37902 -29.78334 -28.31506 -26.83468 -25.33039 -23.88855 -23.70532 -22.14317 -20.51977 -19.04256 -18.54941 -17.97436 -17.49810 -17.12403 -16.60065 -16.19092 -15.98753 -15.69858 -15.16213 -15.10877 -14.79444 -14.37899 -14.09504 -13.78399 -13.51892 -13.36886 -13.22629 -13.12128 -12.88890 -12.68286 -12.56389 -12.44992 -12.16270 -12.13672 -11.84380 -11.15293 -10.99036 -10.62379 -9.79448 -9.62995 -9.09814 -8.41489 -6.08014 -0.13714 0.33544 1.10532 1.33572 1.39443 1.52222 1.56035 1.80272 2.24856 2.71653 2.98326 3.00348 3.32846 3.65449 3.96210 4.03747 4.10027 4.15099 4.20482 4.31437 4.40182 4.51117 4.52274 4.59030 4.84309 4.87279 4.91841 4.96282 5.14173 5.19541 5.25247 5.26106 5.37619 5.39265 5.49214 5.68462 6.01334 6.12020 6.38979 7.05014 7.31931 7.91100 8.62540 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019261 B = 0.006465 C = 0.005354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.367564 B = 4329.890348 C = 5228.895013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.048 4.048 3 C 0.071 3.929 4 O -0.182 6.182 5 C 0.031 3.969 6 C -0.099 4.099 7 C -0.085 4.085 8 C -0.122 4.122 9 C -0.102 4.102 10 C -0.130 4.130 11 C -0.222 4.222 12 C 0.511 3.489 13 O -0.629 6.629 14 N -0.441 5.441 15 C 0.135 3.865 16 C -0.349 4.349 17 H 0.076 0.924 18 C 0.000 4.000 19 N -0.894 5.894 20 Si 0.996 3.004 21 H -0.260 1.260 22 H -0.272 1.272 23 H -0.275 1.275 24 H 0.071 0.929 25 H 0.095 0.905 26 H 0.030 0.970 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.168 0.832 30 H 0.184 0.816 31 H 0.158 0.842 32 H 0.097 0.903 33 H 0.035 0.965 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.194 3.008 -14.228 14.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.085 4.085 3 C 0.021 3.979 4 O -0.083 6.083 5 C -0.015 4.015 6 C -0.117 4.117 7 C -0.102 4.102 8 C -0.140 4.140 9 C -0.120 4.120 10 C -0.131 4.131 11 C -0.227 4.227 12 C 0.300 3.700 13 O -0.518 6.518 14 N -0.158 5.158 15 C -0.009 4.009 16 C -0.477 4.477 17 H 0.094 0.906 18 C -0.202 4.202 19 N -0.531 5.531 20 Si 0.819 3.181 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.199 1.199 24 H 0.090 0.910 25 H 0.114 0.886 26 H 0.050 0.950 27 H 0.141 0.859 28 H 0.100 0.900 29 H 0.186 0.814 30 H 0.201 0.799 31 H 0.175 0.825 32 H 0.115 0.885 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.091 2.997 -14.131 14.446 hybrid contribution 0.047 -0.258 1.615 1.637 sum -0.044 2.739 -12.516 12.812 Atomic orbital electron populations 1.21735 0.92441 1.03937 1.01847 1.20415 0.97706 0.84985 1.05380 1.22976 0.97805 0.95091 0.82000 1.83714 1.69425 1.22057 1.33120 1.20006 1.02708 0.86178 0.92634 1.20445 1.01416 0.88755 1.01078 1.21431 0.97295 0.97538 0.93979 1.21406 0.99834 0.98057 0.94682 1.20647 0.99282 0.92451 0.99664 1.19843 1.04574 0.94459 0.94227 1.20815 1.12098 0.95909 0.93867 1.17436 0.85028 0.81542 0.86005 1.90568 1.30103 1.61432 1.69665 1.43702 1.11223 1.49702 1.11157 1.21250 0.85037 1.01296 0.93288 1.19671 0.95153 1.45537 0.87338 0.90632 1.26224 0.94399 0.96756 1.02871 1.70094 1.01232 1.41939 1.39866 0.84899 0.78131 0.78684 0.76407 1.18488 1.19707 1.19935 0.90987 0.88604 0.95045 0.85862 0.90040 0.81412 0.79859 0.82465 0.88477 0.94655 0.91508 0.93385 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.89 71.98 0.71 -3.27 16 2 C -0.05 -1.46 6.26 29.85 0.19 -1.27 16 3 C 0.07 2.68 6.22 25.20 0.16 2.83 16 4 O -0.18 -6.24 10.53 -4.07 -0.04 -6.28 16 5 C 0.03 1.06 7.39 22.93 0.17 1.23 16 6 C -0.10 -2.37 10.06 22.35 0.22 -2.14 16 7 C -0.08 -1.75 10.01 22.28 0.22 -1.53 16 8 C -0.12 -3.24 10.04 22.28 0.22 -3.01 16 9 C -0.10 -3.89 10.09 22.38 0.23 -3.66 16 10 C -0.13 -5.37 6.39 -20.10 -0.13 -5.50 16 11 C -0.22 -10.23 4.36 -18.98 -0.08 -10.32 16 12 C 0.51 28.31 7.01 86.54 0.61 28.92 16 13 O -0.63 -39.66 16.82 -4.28 -0.07 -39.74 16 14 N -0.44 -24.64 3.01 -663.09 -1.99 -26.63 16 15 C 0.13 6.61 8.46 127.77 1.08 7.69 16 16 C -0.35 -20.62 9.24 84.07 0.78 -19.84 16 17 H 0.08 4.72 7.44 -2.91 -0.02 4.69 16 18 C 0.00 0.00 5.04 84.93 0.43 0.43 16 19 N -0.89 -48.64 10.84 21.67 0.23 -48.40 16 20 Si 1.00 42.82 29.57 68.60 2.03 44.85 16 21 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 26 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.08 2.78 7.86 -2.39 -0.02 2.76 16 29 H 0.17 2.70 8.06 -2.91 -0.02 2.67 16 30 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 31 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 32 H 0.10 4.15 8.06 -2.91 -0.02 4.13 16 33 H 0.03 1.81 7.81 -2.39 -0.02 1.80 16 34 H 0.07 3.32 6.82 -2.39 -0.02 3.31 16 35 H 0.05 2.07 6.79 -2.39 -0.02 2.06 16 36 H 0.28 13.94 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -75.97 312.37 6.05 -69.92 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.09 Total: 15.73 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: 4.80 Total: -9.44 kcal Atomic # 7 Polarization: -73.28 SS G_CDS: -1.76 Total: -75.04 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.11 Total: -46.02 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.85 kcal Total: -75.97 6.05 -69.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125357844.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.584 kcal (2) G-P(sol) polarization free energy of solvation -75.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds