Wall clock time and date at job start Mon Mar 30 2020 01:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 C 1.52994 * 109.47119 * 180.02562 * 10 9 7 12 12 S 1.81403 * 109.47158 * 179.97438 * 11 10 9 13 13 O 1.42101 * 110.53989 * 291.62293 * 12 11 10 14 14 O 1.42103 * 110.54472 * 68.36761 * 12 11 10 15 15 N 1.65598 * 104.45114 * 179.97438 * 12 11 10 16 16 C 1.46500 * 119.99523 * 65.00132 * 15 12 11 17 17 H 1.08996 * 109.36221 * 334.71789 * 16 15 12 18 18 C 1.50068 * 109.36020 * 94.31185 * 16 15 12 19 19 C 1.29447 * 124.07811 * 137.33433 * 18 16 15 20 20 C 1.50069 * 124.06961 * 359.53069 * 19 18 16 21 21 C 1.53020 * 110.15392 * 17.13394 * 20 19 18 22 22 C 1.53028 * 109.35563 * 214.99946 * 16 15 12 23 23 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 25 25 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 26 26 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 27 27 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 28 28 H 1.08998 * 109.46640 * 299.99314 * 11 10 9 29 29 H 1.08994 * 109.47663 * 59.99852 * 11 10 9 30 30 H 0.96997 * 120.00388 * 244.99685 * 15 12 11 31 31 H 1.07997 * 117.96262 * 317.31319 * 18 16 15 32 32 H 1.07998 * 117.96386 * 179.50849 * 19 18 16 33 33 H 1.08996 * 109.35968 * 256.91789 * 20 19 18 34 34 H 1.08999 * 109.35319 * 137.33990 * 20 19 18 35 35 H 1.09001 * 109.64465 * 190.88133 * 21 20 19 36 36 H 1.08998 * 109.81829 * 70.34664 * 21 20 19 37 37 H 1.09003 * 109.63859 * 310.03953 * 22 16 15 38 38 H 1.08999 * 109.64622 * 70.45492 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 6 1.4800 -4.9871 -0.0171 12 16 2.6587 -6.3659 -0.0239 13 8 3.3555 -6.4201 -1.2611 14 8 3.3556 -6.4324 1.2128 15 7 1.7083 -7.7220 -0.0299 16 6 0.8486 -8.0087 -1.1810 17 1 0.6118 -7.0777 -1.6959 18 6 1.5698 -8.9262 -2.1244 19 6 1.0196 -9.9388 -2.7140 20 6 -0.4138 -10.3426 -2.5286 21 6 -1.2117 -9.1888 -1.9173 22 6 -0.4467 -8.6635 -0.6959 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5609 0.8844 25 1 0.6244 -2.5529 -0.8956 26 1 2.8718 -3.6005 -0.9002 27 1 2.8717 -3.6084 0.8798 28 1 0.8531 -5.0490 0.8724 29 1 0.8537 -5.0406 -0.9075 30 1 1.7209 -8.3265 0.7285 31 1 2.6127 -8.7293 -2.3241 32 1 1.6300 -10.5295 -3.3810 33 1 -0.4630 -11.2068 -1.8662 34 1 -0.8427 -10.6061 -3.4954 35 1 -2.1942 -9.5459 -1.6084 36 1 -1.3259 -8.3897 -2.6496 37 1 -0.2105 -9.4916 -0.0275 38 1 -1.0537 -7.9282 -0.1679 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127857305.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:38 Heat of formation + Delta-G solvation = -108.811788 kcal Electronic energy + Delta-G solvation = -19057.253402 eV Core-core repulsion = 16024.983535 eV Total energy + Delta-G solvation = -3032.269866 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.74453 -38.15414 -37.05618 -36.47515 -35.20389 -34.17090 -31.91814 -29.66511 -29.63059 -25.63589 -23.86942 -23.21464 -22.44053 -20.34495 -19.15334 -18.67191 -18.35406 -17.81955 -17.11591 -16.80051 -16.47741 -16.15737 -15.55275 -14.71065 -14.60139 -14.49436 -14.13917 -14.05154 -13.56024 -13.54345 -13.34355 -13.20553 -13.12515 -12.98533 -12.79913 -12.72377 -12.65337 -12.18625 -11.90739 -11.75734 -11.61268 -11.44205 -11.36860 -11.01579 -10.57164 -10.37506 -9.97680 -8.22820 -6.33868 -0.75240 1.28208 1.40225 1.42727 1.50681 1.87100 2.39828 2.74141 3.10671 3.23303 3.66719 3.78763 3.81220 3.90789 4.06142 4.20596 4.29021 4.38369 4.45435 4.64101 4.67603 4.76313 4.77917 4.94111 5.04903 5.08256 5.11606 5.22346 5.37614 5.44704 5.48114 5.62472 5.72872 5.78990 5.94778 6.18015 6.19524 6.81352 7.35367 8.88445 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.003853 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.753336 B = 7265.600232 C = 7806.019646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.555 4.555 8 H 0.060 0.940 9 C 0.031 3.969 10 C -0.107 4.107 11 C -0.609 4.609 12 S 2.627 3.373 13 O -0.989 6.989 14 O -0.994 6.994 15 N -1.101 6.101 16 C 0.175 3.825 17 H 0.092 0.908 18 C -0.193 4.193 19 C -0.134 4.134 20 C -0.094 4.094 21 C -0.121 4.121 22 C -0.124 4.124 23 H 0.265 0.735 24 H 0.004 0.996 25 H 0.004 0.996 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.148 0.852 29 H 0.144 0.856 30 H 0.426 0.574 31 H 0.093 0.907 32 H 0.111 0.889 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.578 -21.796 -3.058 22.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.593 4.593 8 H 0.078 0.922 9 C -0.007 4.007 10 C -0.146 4.146 11 C -0.740 4.740 12 S 2.722 3.278 13 O -0.979 6.979 14 O -0.984 6.984 15 N -0.861 5.861 16 C 0.069 3.931 17 H 0.110 0.890 18 C -0.213 4.213 19 C -0.153 4.153 20 C -0.131 4.131 21 C -0.160 4.160 22 C -0.163 4.163 23 H 0.074 0.926 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.084 0.916 27 H 0.084 0.916 28 H 0.167 0.833 29 H 0.162 0.838 30 H 0.263 0.737 31 H 0.111 0.889 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.751 -21.573 -3.201 21.982 hybrid contribution -0.070 1.090 0.236 1.118 sum -2.822 -20.483 -2.964 20.888 Atomic orbital electron populations 1.70062 1.07602 1.27971 1.51238 1.25925 0.95821 1.03188 0.94523 0.85539 0.78376 0.78207 0.79190 1.19266 1.20553 1.19253 1.21722 0.93735 0.92574 1.51269 0.92222 1.18960 0.94005 0.91759 0.95988 1.21314 0.98710 0.92528 1.02046 1.30500 1.16669 1.13620 1.13181 1.04310 0.75238 0.75385 0.72854 1.93537 1.71286 1.86308 1.46728 1.93531 1.71928 1.86483 1.46452 1.55400 1.61879 1.40616 1.28201 1.19781 0.90001 0.98752 0.84615 0.89017 1.22555 1.00415 0.98353 1.00009 1.22347 0.97924 0.96362 0.98708 1.20576 0.91467 0.98769 1.02297 1.21657 0.99216 0.98242 0.96844 1.21949 0.94017 1.01422 0.98886 0.92603 0.97783 0.97784 0.91603 0.91592 0.83339 0.83767 0.73748 0.88916 0.87093 0.89488 0.89664 0.89388 0.91677 0.89959 0.89766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.62 13.29 21.45 0.28 -55.33 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.56 -31.70 9.11 25.60 0.23 -31.47 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 9 C 0.03 1.61 4.97 29.85 0.15 1.76 16 10 C -0.11 -4.36 5.16 30.59 0.16 -4.20 16 11 C -0.61 -18.16 5.96 71.98 0.43 -17.73 16 12 S 2.63 75.76 5.38 -56.49 -0.30 75.45 16 13 O -0.99 -34.64 17.42 -127.65 -2.22 -36.86 16 14 O -0.99 -34.66 18.08 -127.65 -2.31 -36.97 16 15 N -1.10 -22.53 5.33 -173.32 -0.92 -23.45 16 16 C 0.18 3.31 2.80 44.06 0.12 3.43 16 17 H 0.09 1.72 7.14 -2.39 -0.02 1.70 16 18 C -0.19 -3.99 9.27 27.03 0.25 -3.74 16 19 C -0.13 -2.16 9.80 27.03 0.27 -1.90 16 20 C -0.09 -1.06 6.11 29.66 0.18 -0.88 16 21 C -0.12 -1.39 6.01 30.73 0.18 -1.21 16 22 C -0.12 -1.65 5.53 30.74 0.17 -1.48 16 23 H 0.27 14.91 8.31 -92.70 -0.77 14.14 16 24 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 25 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 26 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 27 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.15 3.85 8.14 -2.39 -0.02 3.83 16 29 H 0.14 3.74 7.43 -2.39 -0.02 3.72 16 30 H 0.43 6.92 8.79 -96.75 -0.85 6.07 16 31 H 0.09 2.33 7.76 -2.91 -0.02 2.30 16 32 H 0.11 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.82 8.13 -2.39 -0.02 0.81 16 37 H 0.08 0.95 8.12 -2.39 -0.02 0.93 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -73.90 325.29 -0.66 -74.56 By element: Atomic # 1 Polarization: 12.92 SS G_CDS: 0.18 Total: 13.11 kcal Atomic # 6 Polarization: -59.34 SS G_CDS: 2.61 Total: -56.74 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -0.64 Total: -78.79 kcal Atomic # 8 Polarization: -69.30 SS G_CDS: -4.53 Total: -73.84 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 75.76 SS G_CDS: -0.30 Total: 75.45 kcal Total: -73.90 -0.66 -74.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127857305.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.253 kcal (2) G-P(sol) polarization free energy of solvation -73.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds