Wall clock time and date at job start Mon Mar 30 2020 01:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86791 * 119.99857 * 2 1 4 4 H 1.48506 * 109.47100 * 269.99508 * 3 2 1 5 5 H 1.48501 * 109.47289 * 29.99801 * 3 2 1 6 6 H 1.48508 * 109.47322 * 149.99952 * 3 2 1 7 7 C 1.38801 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99929 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00014 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47301 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99839 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00181 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00060 * 180.02562 * 13 11 10 15 15 H 1.09002 * 108.87212 * 35.00317 * 14 13 11 16 16 C 1.54239 * 108.89891 * 276.39823 * 14 13 11 17 17 C 1.50324 * 108.60483 * 159.23380 * 16 14 13 18 18 C 1.54072 * 112.42849 * 94.23215 * 17 16 14 19 19 C 1.54064 * 112.82094 * 318.31337 * 18 17 16 20 20 C 1.50475 * 112.49433 * 318.28277 * 19 18 17 21 21 C 1.45542 * 108.89506 * 153.60629 * 14 13 11 22 22 H 1.09002 * 108.89637 * 61.83917 * 21 14 13 23 23 O 1.42897 * 108.89707 * 303.25045 * 21 14 13 24 24 H 0.96996 * 120.00277 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46845 * 60.00292 * 10 9 7 26 26 H 1.08998 * 109.47200 * 300.00605 * 10 9 7 27 27 H 0.97005 * 119.99591 * 0.02562 * 13 11 10 28 28 H 1.09004 * 109.62699 * 279.07693 * 16 14 13 29 29 H 1.09002 * 109.62878 * 39.64763 * 16 14 13 30 30 H 1.08999 * 108.89071 * 333.49748 * 17 16 14 31 31 H 1.08995 * 108.85450 * 214.95230 * 17 16 14 32 32 H 1.09000 * 108.81323 * 197.44942 * 18 17 16 33 33 H 1.09004 * 108.72487 * 79.11316 * 18 17 16 34 34 H 1.09002 * 108.87902 * 197.50830 * 19 18 17 35 35 H 1.09003 * 108.79896 * 79.00312 * 19 18 17 36 36 H 1.08997 * 109.62846 * 334.44435 * 20 19 18 37 37 H 1.08996 * 109.79000 * 213.95495 * 20 19 18 38 38 H 0.96698 * 114.00221 * 179.97438 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3028 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8441 -6.3432 0.0008 14 6 2.3304 -7.7151 0.0008 15 1 1.4153 -7.7489 -0.5905 16 6 2.0034 -8.1261 1.4510 17 6 1.0346 -9.2749 1.4171 18 6 1.7409 -10.6420 1.4943 19 6 3.0145 -10.7063 0.6299 20 6 2.8334 -10.0492 -0.7117 21 6 3.3200 -8.5890 -0.6118 22 1 4.2325 -8.5610 -0.0162 23 8 3.6109 -8.1091 -1.9259 24 1 -0.4850 0.8400 -0.0004 25 1 3.1244 -3.7314 0.8905 26 1 3.1245 -3.7313 -0.8894 27 1 3.8009 -6.1835 0.0004 28 1 2.9177 -8.4314 1.9600 29 1 1.5518 -7.2849 1.9770 30 1 0.4614 -9.2260 0.4912 31 1 0.3501 -9.1834 2.2604 32 1 1.0490 -11.4146 1.1589 33 1 2.0102 -10.8386 2.5321 34 1 3.2848 -11.7511 0.4772 35 1 3.8249 -10.2067 1.1607 36 1 1.7792 -10.0658 -0.9882 37 1 3.4176 -10.5792 -1.4640 38 1 4.2646 -8.6389 -2.4024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130863494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:47 Heat of formation + Delta-G solvation = -103.953513 kcal Electronic energy + Delta-G solvation = -19154.251660 eV Core-core repulsion = 16122.192464 eV Total energy + Delta-G solvation = -3032.059196 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.33833 -38.30434 -36.12029 -34.27749 -32.38668 -31.66867 -30.72143 -28.48444 -25.47524 -24.92590 -24.18620 -21.00143 -20.24411 -19.59119 -17.82432 -17.56890 -16.71077 -16.27613 -15.29549 -15.04467 -14.76824 -14.64629 -14.37820 -13.83723 -13.49924 -13.35772 -13.08836 -12.93756 -12.55644 -12.53536 -12.02872 -11.95079 -11.46294 -11.06878 -11.02434 -10.98160 -10.74775 -10.69533 -10.63127 -10.56858 -10.16332 -9.76392 -9.25142 -9.02812 -8.74889 -8.17633 -6.44394 -6.17520 -3.87327 3.08600 3.21202 3.25284 3.30701 3.35209 3.74073 3.90586 4.24732 4.44461 4.48144 4.70997 4.84575 4.86504 4.96755 5.03109 5.10221 5.17459 5.28675 5.38400 5.56508 5.58636 5.65028 5.70560 5.75791 5.84428 5.91932 5.96448 6.00172 6.08470 6.19733 6.22160 6.27169 6.76651 7.42955 7.63665 7.84424 8.39471 8.74410 9.27689 10.89946 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041817 B = 0.003580 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.423044 B = 7820.016668 C = 8163.497993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.152 4.152 11 C 0.534 3.466 12 O -0.520 6.520 13 N -0.727 5.727 14 C 0.151 3.849 15 H 0.091 0.909 16 C -0.121 4.121 17 C -0.120 4.120 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.145 4.145 21 C 0.103 3.897 22 H 0.054 0.946 23 O -0.560 6.560 24 H 0.268 0.732 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.396 0.604 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.466 -22.055 1.147 24.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.320 3.680 12 O -0.394 6.394 13 N -0.380 5.380 14 C 0.046 3.954 15 H 0.109 0.891 16 C -0.160 4.160 17 C -0.158 4.158 18 C -0.156 4.156 19 C -0.157 4.157 20 C -0.183 4.183 21 C 0.044 3.956 22 H 0.072 0.928 23 O -0.365 6.365 24 H 0.078 0.922 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.230 0.770 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.089 0.911 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.848 -21.814 1.320 22.902 hybrid contribution 2.881 0.885 -0.162 3.018 sum 9.729 -20.929 1.158 23.109 Atomic orbital electron populations 1.70024 1.05940 1.27382 1.47001 1.24990 0.95025 0.99002 0.94604 0.86170 0.79397 0.81596 0.78328 1.20290 1.20784 1.19714 1.22882 0.94920 0.91743 1.58761 0.90974 1.85371 1.05079 0.96245 1.96696 1.23524 1.06439 0.95531 1.04807 1.20251 0.86562 0.86242 0.74945 1.90686 1.15346 1.85566 1.47810 1.45985 1.09756 1.04915 1.77329 1.19810 0.98124 0.81322 0.96185 0.89076 1.21639 0.99846 0.98878 0.95626 1.21271 0.98251 0.93452 1.02836 1.21953 0.96603 0.97340 0.99655 1.21284 0.98416 1.00603 0.95391 1.22011 1.03385 0.94967 0.97936 1.20987 0.97459 0.92729 0.84447 0.92795 1.86687 1.64929 1.56698 1.28158 0.92235 0.89399 0.89286 0.77022 0.91561 0.90306 0.91626 0.91656 0.92172 0.92160 0.91972 0.91919 0.90446 0.91051 0.77827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.59 13.22 55.49 0.73 -25.85 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.53 -15.57 9.50 30.94 0.29 -15.28 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 10 C -0.15 -3.22 6.16 36.01 0.22 -3.00 16 11 C 0.53 10.53 7.65 -10.99 -0.08 10.45 16 12 O -0.52 -12.23 15.51 5.55 0.09 -12.14 16 13 N -0.73 -10.65 4.69 -56.63 -0.27 -10.91 16 14 C 0.15 1.91 1.62 -70.80 -0.11 1.80 16 15 H 0.09 1.43 6.87 -51.93 -0.36 1.07 16 16 C -0.12 -1.37 5.17 -27.42 -0.14 -1.52 16 17 C -0.12 -1.18 5.31 -27.51 -0.15 -1.33 16 18 C -0.12 -0.88 5.85 -25.62 -0.15 -1.03 16 19 C -0.12 -0.80 5.32 -27.44 -0.15 -0.94 16 20 C -0.14 -1.08 5.23 -27.34 -0.14 -1.23 16 21 C 0.10 0.97 2.41 -29.60 -0.07 0.90 16 22 H 0.05 0.44 7.47 -51.93 -0.39 0.05 16 23 O -0.56 -5.87 12.91 -35.23 -0.45 -6.33 16 24 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 25 H 0.09 1.71 8.14 -51.92 -0.42 1.28 16 26 H 0.09 1.78 8.14 -51.92 -0.42 1.35 16 27 H 0.40 4.80 8.57 -40.82 -0.35 4.45 16 28 H 0.07 0.63 6.96 -51.93 -0.36 0.27 16 29 H 0.08 1.11 7.96 -51.93 -0.41 0.69 16 30 H 0.07 0.71 6.63 -51.93 -0.34 0.36 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.41 6.62 -51.93 -0.34 0.06 16 36 H 0.08 0.67 6.98 -51.93 -0.36 0.31 16 37 H 0.07 0.42 8.01 -51.93 -0.42 0.00 16 38 H 0.38 2.18 8.95 45.56 0.41 2.59 16 LS Contribution 317.47 15.07 4.78 4.78 Total: -1.00 -35.39 317.47 -7.94 -43.33 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.01 Total: 3.46 kcal Atomic # 6 Polarization: -8.58 SS G_CDS: -0.58 Total: -9.15 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.47 Total: -36.77 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.37 Total: -18.47 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -35.39 -7.94 -43.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130863494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.628 kcal (2) G-P(sol) polarization free energy of solvation -35.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds