Wall clock time and date at job start Mon Mar 30 2020 01:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86791 * 119.99857 * 2 1 4 4 H 1.48506 * 109.47100 * 269.99508 * 3 2 1 5 5 H 1.48501 * 109.47289 * 29.99801 * 3 2 1 6 6 H 1.48508 * 109.47322 * 149.99952 * 3 2 1 7 7 C 1.38801 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99929 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99974 * 0.02562 * 7 2 1 10 10 C 1.81002 * 100.00014 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47301 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99839 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00181 * 179.97438 * 11 10 9 14 14 C 1.46498 * 120.00060 * 180.02562 * 13 11 10 15 15 H 1.09002 * 108.87212 * 35.00317 * 14 13 11 16 16 C 1.54239 * 108.89891 * 276.39823 * 14 13 11 17 17 C 1.50324 * 108.60483 * 159.23380 * 16 14 13 18 18 C 1.54072 * 112.42849 * 94.23215 * 17 16 14 19 19 C 1.54064 * 112.82094 * 318.31337 * 18 17 16 20 20 C 1.50475 * 112.49433 * 318.28277 * 19 18 17 21 21 C 1.45542 * 108.89506 * 153.60629 * 14 13 11 22 22 H 1.09002 * 108.89637 * 61.83917 * 21 14 13 23 23 O 1.42897 * 108.89707 * 303.25045 * 21 14 13 24 24 H 0.96996 * 120.00277 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46845 * 60.00292 * 10 9 7 26 26 H 1.08998 * 109.47200 * 300.00605 * 10 9 7 27 27 H 0.97005 * 119.99591 * 0.02562 * 13 11 10 28 28 H 1.09004 * 109.62699 * 279.07693 * 16 14 13 29 29 H 1.09002 * 109.62878 * 39.64763 * 16 14 13 30 30 H 1.08999 * 108.89071 * 333.49748 * 17 16 14 31 31 H 1.08995 * 108.85450 * 214.95230 * 17 16 14 32 32 H 1.09000 * 108.81323 * 197.44942 * 18 17 16 33 33 H 1.09004 * 108.72487 * 79.11316 * 18 17 16 34 34 H 1.09002 * 108.87902 * 197.50830 * 19 18 17 35 35 H 1.09003 * 108.79896 * 79.00312 * 19 18 17 36 36 H 1.08997 * 109.62846 * 334.44435 * 20 19 18 37 37 H 1.08996 * 109.79000 * 213.95495 * 20 19 18 38 38 H 0.96698 * 114.00221 * 179.97438 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3028 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8441 -6.3432 0.0008 14 6 2.3304 -7.7151 0.0008 15 1 1.4153 -7.7489 -0.5905 16 6 2.0034 -8.1261 1.4510 17 6 1.0346 -9.2749 1.4171 18 6 1.7409 -10.6420 1.4943 19 6 3.0145 -10.7063 0.6299 20 6 2.8334 -10.0492 -0.7117 21 6 3.3200 -8.5890 -0.6118 22 1 4.2325 -8.5610 -0.0162 23 8 3.6109 -8.1091 -1.9259 24 1 -0.4850 0.8400 -0.0004 25 1 3.1244 -3.7314 0.8905 26 1 3.1245 -3.7313 -0.8894 27 1 3.8009 -6.1835 0.0004 28 1 2.9177 -8.4314 1.9600 29 1 1.5518 -7.2849 1.9770 30 1 0.4614 -9.2260 0.4912 31 1 0.3501 -9.1834 2.2604 32 1 1.0490 -11.4146 1.1589 33 1 2.0102 -10.8386 2.5321 34 1 3.2848 -11.7511 0.4772 35 1 3.8249 -10.2067 1.1607 36 1 1.7792 -10.0658 -0.9882 37 1 3.4176 -10.5792 -1.4640 38 1 4.2646 -8.6389 -2.4024 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130863494.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:47 Heat of formation + Delta-G solvation = -131.250041 kcal Electronic energy + Delta-G solvation = -19155.435326 eV Core-core repulsion = 16122.192464 eV Total energy + Delta-G solvation = -3033.242862 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.41554 -39.60345 -36.86592 -35.50651 -34.58941 -32.56339 -31.83601 -29.88232 -27.67354 -25.77322 -24.97304 -21.91636 -21.72917 -20.28737 -19.82002 -18.36331 -17.86324 -17.80962 -16.88569 -16.45727 -16.16120 -15.84569 -15.71441 -15.01562 -14.75812 -14.45916 -14.21138 -14.17854 -13.71745 -13.63791 -13.17650 -13.17170 -12.89266 -12.83556 -12.61501 -12.44068 -11.84954 -11.70721 -11.43129 -11.37725 -11.25016 -11.14658 -10.99847 -10.73549 -10.28698 -10.07080 -8.67668 -8.34976 -6.13549 1.26345 1.42510 1.46485 1.57410 1.63067 2.24600 2.28513 2.98910 3.13682 3.31630 3.70932 3.81221 3.95485 4.05382 4.08796 4.17331 4.24987 4.28698 4.30446 4.38595 4.48706 4.64783 4.77311 4.93433 4.95682 5.00116 5.17068 5.22822 5.27452 5.31398 5.40914 5.41418 5.52159 5.53533 6.19351 6.52029 6.92184 7.05852 7.27210 8.74441 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.041817 B = 0.003580 C = 0.003429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.423044 B = 7820.016668 C = 8163.497993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.548 4.548 8 H 0.082 0.918 9 S -0.151 6.151 10 C -0.128 4.128 11 C 0.533 3.467 12 O -0.567 6.567 13 N -0.704 5.704 14 C 0.151 3.849 15 H 0.054 0.946 16 C -0.114 4.114 17 C -0.120 4.120 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.139 4.139 21 C 0.105 3.895 22 H 0.080 0.920 23 O -0.585 6.585 24 H 0.271 0.729 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.413 0.587 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.095 0.905 38 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.641 -23.200 1.363 26.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.695 4.695 8 H 0.100 0.900 9 S 0.076 5.924 10 C -0.279 4.279 11 C 0.319 3.681 12 O -0.445 6.445 13 N -0.356 5.356 14 C 0.046 3.954 15 H 0.072 0.928 16 C -0.153 4.153 17 C -0.158 4.158 18 C -0.151 4.151 19 C -0.155 4.155 20 C -0.177 4.177 21 C 0.046 3.954 22 H 0.098 0.902 23 O -0.394 6.394 24 H 0.080 0.920 25 H 0.128 0.872 26 H 0.123 0.877 27 H 0.249 0.751 28 H 0.112 0.888 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 10.084 -23.013 1.529 25.172 hybrid contribution 1.906 1.123 -0.250 2.226 sum 11.990 -21.890 1.279 24.991 Atomic orbital electron populations 1.70190 1.08012 1.28642 1.47970 1.26158 0.95995 1.03379 0.93666 0.84923 0.78190 0.75845 0.78816 1.19293 1.20185 1.18129 1.23213 0.95351 0.92005 1.58980 0.89958 1.85565 1.10581 0.99216 1.97039 1.23360 1.03520 0.94492 1.06537 1.20055 0.86316 0.86712 0.74992 1.90674 1.17376 1.86073 1.50412 1.45799 1.10030 1.04803 1.74975 1.20011 0.97809 0.80606 0.96933 0.92795 1.21557 1.01124 0.98186 0.94414 1.21256 0.98066 0.94731 1.01751 1.21930 0.97134 0.95330 1.00743 1.21296 0.97892 1.01804 0.94507 1.21981 1.02604 0.93781 0.99336 1.20980 0.97289 0.92828 0.84320 0.90198 1.86632 1.66056 1.57914 1.28763 0.91963 0.87230 0.87671 0.75064 0.88827 0.93653 0.93368 0.92123 0.91647 0.91046 0.90074 0.90980 0.92285 0.88693 0.75393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.07 13.22 21.65 0.29 -56.78 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 44.33 29.55 68.60 2.03 46.36 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.55 -32.12 9.50 67.95 0.65 -31.48 16 8 H 0.08 4.48 7.80 -2.91 -0.02 4.46 16 9 S -0.15 -8.71 20.57 -56.49 -1.16 -9.88 16 10 C -0.13 -5.40 6.16 71.24 0.44 -4.96 16 11 C 0.53 21.36 7.65 87.66 0.67 22.03 16 12 O -0.57 -28.01 15.51 -3.05 -0.05 -28.05 16 13 N -0.70 -20.04 4.69 -451.46 -2.12 -22.16 16 14 C 0.15 3.77 1.62 43.13 0.07 3.84 16 15 H 0.05 1.78 6.87 -2.39 -0.02 1.76 16 16 C -0.11 -2.54 5.17 30.15 0.16 -2.38 16 17 C -0.12 -2.35 5.31 30.09 0.16 -2.19 16 18 C -0.11 -1.45 5.85 31.32 0.18 -1.27 16 19 C -0.12 -1.15 5.32 30.14 0.16 -0.99 16 20 C -0.14 -1.71 5.23 30.20 0.16 -1.56 16 21 C 0.10 1.72 2.41 28.74 0.07 1.79 16 22 H 0.08 0.95 7.47 -2.39 -0.02 0.93 16 23 O -0.58 -11.03 12.91 -148.98 -1.92 -12.95 16 24 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 25 H 0.11 4.13 8.14 -2.40 -0.02 4.11 16 26 H 0.11 4.09 8.14 -2.40 -0.02 4.07 16 27 H 0.41 9.05 8.57 -92.70 -0.79 8.26 16 28 H 0.09 1.55 6.96 -2.38 -0.02 1.53 16 29 H 0.04 1.31 7.96 -2.39 -0.02 1.30 16 30 H 0.05 1.10 6.63 -2.39 -0.02 1.08 16 31 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.61 6.62 -2.39 -0.02 0.59 16 36 H 0.06 0.97 6.98 -2.39 -0.02 0.95 16 37 H 0.09 0.76 8.01 -2.39 -0.02 0.74 16 38 H 0.40 3.45 8.95 -74.06 -0.66 2.79 16 Total: -1.00 -80.31 317.47 -0.15 -80.46 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -0.38 Total: 18.97 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 3.18 Total: -15.97 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -1.83 Total: -78.94 kcal Atomic # 8 Polarization: -39.03 SS G_CDS: -1.97 Total: -41.00 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 16 Polarization: -8.71 SS G_CDS: -1.16 Total: -9.88 kcal Total: -80.31 -0.15 -80.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130863494.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.790 kcal (2) G-P(sol) polarization free energy of solvation -80.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds