Wall clock time and date at job start Mon Mar 30 2020 01:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.46783 * 126.90917 * 2 1 4 4 C 1.39405 * 134.36941 * 0.02562 * 3 2 1 5 5 C 1.36735 * 119.71565 * 179.97438 * 4 3 2 6 6 C 1.38743 * 120.41583 * 0.02562 * 5 4 3 7 7 C 1.37846 * 120.68799 * 359.97438 * 6 5 4 8 8 C 1.38940 * 119.81688 * 0.02562 * 7 6 5 9 9 O 1.34807 * 133.49399 * 179.68800 * 8 7 6 10 10 C 1.33997 * 126.90244 * 179.97438 * 2 1 3 11 11 C 1.50699 * 124.92877 * 0.02562 * 10 2 1 12 12 H 1.09003 * 109.46426 * 344.99709 * 11 10 2 13 13 C 1.53000 * 109.47082 * 104.99412 * 11 10 2 14 14 N 1.46497 * 109.46988 * 224.99660 * 11 10 2 15 15 C 1.34784 * 119.99684 * 155.00125 * 14 11 10 16 16 O 1.21688 * 119.99871 * 359.97438 * 15 14 11 17 17 C 1.46371 * 119.99742 * 180.02562 * 15 14 11 18 18 H 1.07999 * 120.00082 * 353.93340 * 17 15 14 19 19 C 1.40047 * 119.99719 * 173.93923 * 17 15 14 20 20 N 1.30675 * 120.00081 * 6.14594 * 19 17 15 21 21 Si 1.86799 * 119.99880 * 186.14818 * 19 17 15 22 22 H 1.48504 * 109.47180 * 94.98038 * 21 19 17 23 23 H 1.48501 * 109.47295 * 214.98149 * 21 19 17 24 24 H 1.48507 * 109.47260 * 334.98136 * 21 19 17 25 25 H 1.09001 * 109.47385 * 89.97593 * 1 2 3 26 26 H 1.09005 * 109.46921 * 209.97627 * 1 2 3 27 27 H 1.08997 * 109.46868 * 329.97373 * 1 2 3 28 28 H 1.08002 * 120.14315 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.79111 * 179.97438 * 5 4 3 30 30 H 1.08007 * 119.65227 * 179.97438 * 6 5 4 31 31 H 1.07997 * 120.08700 * 180.02562 * 7 6 5 32 32 H 1.09003 * 109.47066 * 300.00086 * 13 11 10 33 33 H 1.08997 * 109.47040 * 60.00098 * 13 11 10 34 34 H 1.09000 * 109.46945 * 180.02562 * 13 11 10 35 35 H 0.96991 * 120.00252 * 334.99658 * 14 11 10 36 36 H 0.97001 * 119.99619 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3885 1.1737 0.0000 4 6 2.1771 2.5516 0.0004 5 6 3.2482 3.4016 0.0008 6 6 4.5422 2.9011 0.0002 7 6 4.7706 1.5417 -0.0002 8 6 3.6964 0.6606 -0.0006 9 8 3.5991 -0.6840 -0.0064 10 6 2.3116 -1.0715 0.0005 11 6 1.8417 -2.5034 0.0006 12 1 0.7851 -2.5389 0.2662 13 6 2.0378 -3.1046 -1.3926 14 7 2.6171 -3.2717 0.9776 15 6 2.0944 -4.3863 1.5263 16 8 0.9782 -4.7541 1.2105 17 6 2.8689 -5.1537 2.5029 18 1 3.8938 -4.8843 2.7111 19 6 2.2809 -6.2372 3.1673 20 7 1.0837 -6.6386 2.8304 21 14 3.2078 -7.1089 4.5349 22 1 2.8038 -6.5414 5.8465 23 1 2.8885 -8.5588 4.5034 24 1 4.6680 -6.9192 4.3422 25 1 -0.3634 0.0004 -1.0277 26 1 -0.3633 -0.8902 0.5135 27 1 -0.3633 0.8897 0.5142 28 1 1.1717 2.9460 0.0005 29 1 3.0858 4.4693 0.0007 30 1 5.3791 3.5837 0.0001 31 1 5.7819 1.1627 -0.0003 32 1 1.4608 -2.5328 -2.1196 33 1 3.0943 -3.0689 -1.6583 34 1 1.6975 -4.1401 -1.3927 35 1 3.5066 -2.9784 1.2295 36 1 0.6766 -7.3893 3.2904 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131828679.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:05 Heat of formation + Delta-G solvation = -43.241898 kcal Electronic energy + Delta-G solvation = -20323.064815 eV Core-core repulsion = 17158.194321 eV Total energy + Delta-G solvation = -3164.870494 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.53649 -39.69443 -38.76079 -36.37072 -34.84443 -34.44187 -31.80127 -31.47078 -30.22993 -28.24383 -28.07466 -25.03756 -23.80626 -22.66485 -21.29609 -21.08760 -19.44170 -18.00835 -17.86583 -17.54077 -17.28196 -16.54564 -16.13047 -15.69523 -15.13117 -14.93131 -14.80254 -14.53712 -14.36209 -14.10109 -13.72429 -13.53307 -13.38127 -13.19202 -13.07837 -12.86768 -12.80556 -12.64522 -12.57231 -12.22693 -12.01842 -11.78409 -10.95266 -10.80708 -9.92858 -9.64000 -9.56874 -9.04155 -8.32671 -6.88518 -0.07317 0.40587 1.25049 1.39292 1.40045 1.56101 1.66405 2.23338 2.43980 2.77790 2.95300 3.32352 3.56426 3.66975 3.85546 4.03734 4.12704 4.21114 4.25593 4.39727 4.49640 4.58324 4.65490 4.72576 4.76864 4.83070 4.95827 5.06192 5.12701 5.28592 5.30074 5.38894 5.50927 5.52054 5.76196 5.82839 6.05724 6.19563 6.25425 6.84108 7.42879 8.42573 8.62824 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.026638 B = 0.004284 C = 0.003989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.864989 B = 6534.134343 C = 7017.632439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.174 4.174 3 C -0.145 4.145 4 C -0.079 4.079 5 C -0.133 4.133 6 C -0.086 4.086 7 C -0.122 4.122 8 C 0.022 3.978 9 O -0.204 6.204 10 C 0.016 3.984 11 C 0.229 3.771 12 H 0.089 0.911 13 C -0.147 4.147 14 N -0.753 5.753 15 C 0.544 3.456 16 O -0.622 6.622 17 C -0.575 4.575 18 H 0.083 0.917 19 C 0.032 3.968 20 N -0.817 5.817 21 Si 0.997 3.003 22 H -0.263 1.263 23 H -0.269 1.269 24 H -0.251 1.251 25 H 0.087 0.913 26 H 0.057 0.943 27 H 0.086 0.914 28 H 0.146 0.854 29 H 0.164 0.836 30 H 0.171 0.829 31 H 0.144 0.856 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.392 0.608 36 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.360 19.474 -5.232 20.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.176 4.176 3 C -0.146 4.146 4 C -0.097 4.097 5 C -0.151 4.151 6 C -0.104 4.104 7 C -0.140 4.140 8 C -0.025 4.025 9 O -0.107 6.107 10 C -0.032 4.032 11 C 0.124 3.876 12 H 0.107 0.893 13 C -0.206 4.206 14 N -0.407 5.407 15 C 0.349 3.651 16 O -0.509 6.509 17 C -0.611 4.611 18 H 0.101 0.899 19 C -0.183 4.183 20 N -0.446 5.446 21 Si 0.816 3.184 22 H -0.188 1.188 23 H -0.194 1.194 24 H -0.174 1.174 25 H 0.105 0.895 26 H 0.075 0.925 27 H 0.105 0.895 28 H 0.163 0.837 29 H 0.182 0.818 30 H 0.188 0.812 31 H 0.162 0.838 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.225 0.775 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.615 18.914 -5.465 20.221 hybrid contribution 0.476 -0.723 0.591 1.048 sum 5.091 18.191 -4.873 19.508 Atomic orbital electron populations 1.20272 0.87021 1.03150 1.03359 1.21212 0.97732 0.90244 1.08365 1.20064 0.92051 0.95285 1.07226 1.20622 1.01377 0.89428 0.98253 1.21225 0.91684 1.01389 1.00778 1.21407 0.98830 0.93066 0.97096 1.20354 0.96644 0.91984 1.05006 1.20250 0.97085 0.81023 1.04178 1.83892 1.27866 1.22062 1.76868 1.22255 0.80854 0.95984 1.04068 1.19205 0.96095 0.81539 0.90773 0.89345 1.22086 1.02366 1.00872 0.95269 1.45992 1.19911 1.28327 1.46428 1.18532 0.86031 0.79549 0.81018 1.90548 1.22891 1.71274 1.66215 1.21391 1.00345 1.15047 1.24366 0.89922 1.26917 0.95462 0.96464 0.99479 1.70167 1.15568 1.22075 1.36782 0.85019 0.79223 0.77184 0.76947 1.18779 1.19393 1.17449 0.89470 0.92451 0.89530 0.83673 0.81850 0.81195 0.83794 0.89845 0.92125 0.93420 0.77500 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.14 10.13 71.24 0.72 -1.42 16 2 C -0.17 -5.57 6.35 -18.59 -0.12 -5.69 16 3 C -0.15 -4.23 6.38 -20.21 -0.13 -4.36 16 4 C -0.08 -1.68 10.05 22.20 0.22 -1.45 16 5 C -0.13 -2.13 9.98 22.04 0.22 -1.91 16 6 C -0.09 -1.41 10.01 22.30 0.22 -1.19 16 7 C -0.12 -2.78 10.07 22.35 0.23 -2.56 16 8 C 0.02 0.66 7.42 22.99 0.17 0.83 16 9 O -0.20 -7.39 10.33 -9.01 -0.09 -7.48 16 10 C 0.02 0.59 6.00 24.72 0.15 0.74 16 11 C 0.23 9.54 2.94 44.25 0.13 9.67 16 12 H 0.09 3.99 6.15 -2.39 -0.01 3.98 16 13 C -0.15 -5.53 9.47 71.98 0.68 -4.85 16 14 N -0.75 -36.27 5.07 -450.40 -2.28 -38.55 16 15 C 0.54 32.16 7.71 86.36 0.67 32.82 16 16 O -0.62 -41.37 14.71 -4.31 -0.06 -41.43 16 17 C -0.58 -33.40 9.53 24.83 0.24 -33.17 16 18 H 0.08 4.39 7.85 -2.91 -0.02 4.37 16 19 C 0.03 1.83 5.49 85.30 0.47 2.30 16 20 N -0.82 -49.98 11.85 21.84 0.26 -49.72 16 21 Si 1.00 41.51 29.56 68.60 2.03 43.53 16 22 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 23 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 24 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 25 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.06 1.70 6.95 -2.38 -0.02 1.68 16 27 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 29 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 30 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 31 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.39 17.54 8.36 -92.72 -0.78 16.77 16 36 H 0.28 15.23 8.29 -92.71 -0.77 14.46 16 Total: -1.00 -77.18 314.92 4.05 -73.13 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.33 Total: 30.75 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 3.87 Total: -10.23 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -2.02 Total: -88.27 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -0.16 Total: -48.91 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -77.18 4.05 -73.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131828679.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.889 kcal (2) G-P(sol) polarization free energy of solvation -77.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds