Wall clock time and date at job start Mon Mar 30 2020 01:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41381 * 126.57910 * 2 1 4 4 C 1.34521 * 106.83987 * 179.97438 * 3 2 1 5 5 O 1.34303 * 108.41531 * 359.74470 * 4 3 2 6 6 C 1.34298 * 109.48133 * 0.43128 * 5 4 3 7 7 C 1.50700 * 125.78904 * 179.83226 * 6 5 4 8 8 N 1.46495 * 109.46732 * 269.69054 * 7 6 5 9 9 C 1.39785 * 119.99884 * 180.02562 * 8 7 6 10 10 C 1.38950 * 120.00811 * 179.97438 * 9 8 7 11 11 C 1.38013 * 119.99674 * 180.02562 * 10 9 8 12 12 C 1.38901 * 120.00276 * 0.02562 * 11 10 9 13 13 O 1.35792 * 119.99457 * 179.97438 * 12 11 10 14 14 C 1.34816 * 117.00137 * 354.45290 * 13 12 11 15 15 H 1.08010 * 119.99647 * 5.06210 * 14 13 12 16 16 C 1.38620 * 120.00540 * 185.05841 * 14 13 12 17 17 N 1.31582 * 119.99901 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00232 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.47297 * 59.99593 * 18 16 14 20 20 H 1.48498 * 109.47272 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46874 * 300.00200 * 18 16 14 22 22 C 1.38894 * 120.01424 * 0.26869 * 12 11 10 23 23 C 1.38013 * 120.00785 * 359.45369 * 22 12 11 24 24 H 1.09006 * 109.46887 * 270.03938 * 1 2 3 25 25 H 1.08997 * 109.47250 * 30.03370 * 1 2 3 26 26 H 1.09001 * 109.47731 * 150.03753 * 1 2 3 27 27 H 1.07997 * 126.58224 * 359.97438 * 3 2 1 28 28 H 1.07999 * 125.78747 * 180.02562 * 4 3 2 29 29 H 1.09004 * 109.46765 * 149.69394 * 7 6 5 30 30 H 1.08997 * 109.47315 * 29.69485 * 7 6 5 31 31 H 0.97000 * 120.00771 * 359.97438 * 8 7 6 32 32 H 1.08004 * 120.00160 * 0.02562 * 10 9 8 33 33 H 1.07989 * 119.99834 * 179.97438 * 11 10 9 34 34 H 0.97001 * 119.99978 * 179.97438 * 17 16 14 35 35 H 1.08001 * 119.99781 * 179.71132 * 22 12 11 36 36 H 1.08000 * 120.00968 * 180.27541 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5846 -0.6617 0.0066 6 6 2.3086 -1.0802 0.0004 7 6 1.8521 -2.5164 0.0006 8 7 1.7047 -2.9820 -1.3806 9 6 1.2880 -4.2917 -1.6359 10 6 1.1476 -4.7333 -2.9459 11 6 0.7357 -6.0262 -3.1977 12 6 0.4610 -6.8858 -2.1418 13 8 0.0552 -8.1577 -2.3897 14 6 -0.1715 -8.4879 -3.6770 15 1 0.0490 -7.7804 -4.4628 16 6 -0.6876 -9.7352 -3.9922 17 7 -0.9567 -10.5969 -3.0349 18 14 -1.0010 -10.1929 -5.7759 19 1 0.2741 -10.1300 -6.5346 20 1 -1.5509 -11.5706 -5.8442 21 1 -1.9760 -9.2414 -6.3671 22 6 0.5954 -6.4428 -0.8323 23 6 1.0128 -5.1517 -0.5798 24 1 -0.3633 0.0007 1.0277 25 1 -0.3633 0.8896 -0.5143 26 1 -0.3634 -0.8903 -0.5132 27 1 2.0367 2.1690 -0.0004 28 1 4.5060 1.2923 0.0011 29 1 0.8937 -2.5930 0.5141 30 1 2.5900 -3.1321 0.5148 31 1 1.8955 -2.3814 -2.1180 32 1 1.3608 -4.0648 -3.7669 33 1 0.6262 -6.3694 -4.2158 34 1 -1.3182 -11.4696 -3.2554 35 1 0.3772 -7.1099 -0.0114 36 1 1.1215 -4.8086 0.4385 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135186516.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:34 Heat of formation + Delta-G solvation = 17.484349 kcal Electronic energy + Delta-G solvation = -19495.341115 eV Core-core repulsion = 16333.103909 eV Total energy + Delta-G solvation = -3162.237206 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.80296 -39.01917 -37.14465 -34.93828 -33.96345 -32.11077 -30.86426 -30.16271 -28.54388 -26.88921 -25.50756 -24.47548 -22.09332 -21.59818 -20.73151 -19.86132 -17.87567 -17.35219 -17.09232 -16.33522 -16.08789 -15.06145 -14.84649 -14.43007 -14.14668 -13.62059 -13.52873 -13.39339 -13.30822 -13.10589 -12.88748 -12.63158 -12.48466 -12.40174 -11.69948 -11.55757 -11.40943 -11.28807 -10.91766 -10.60061 -10.36363 -9.83146 -9.24877 -9.19469 -8.65008 -8.45380 -8.17056 -6.42424 -6.31545 -3.88925 1.44040 2.20477 2.32059 2.56371 2.78782 3.19650 3.20738 3.23290 3.95485 4.07129 4.45401 4.66421 4.68269 4.73592 5.19023 5.22399 5.26695 5.38302 5.43737 5.47015 5.62121 5.65605 5.67260 5.76725 5.86674 5.96824 6.19858 6.23370 6.33706 6.52778 6.85828 6.89113 6.95406 7.12851 7.31921 7.44356 7.63012 7.93190 8.12702 8.19560 9.14299 9.88481 10.87133 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.045150 B = 0.003013 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.006123 B = 9290.748246 C = 9417.427608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.160 4.160 3 C -0.216 4.216 4 C -0.036 4.036 5 O -0.171 6.171 6 C -0.028 4.028 7 C 0.217 3.783 8 N -0.756 5.756 9 C 0.122 3.878 10 C -0.138 4.138 11 C -0.190 4.190 12 C 0.115 3.885 13 O -0.188 6.188 14 C -0.388 4.388 15 H 0.088 0.912 16 C 0.037 3.963 17 N -0.869 5.869 18 Si 0.938 3.062 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.271 1.271 22 C -0.150 4.150 23 C -0.146 4.146 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.147 0.853 28 H 0.202 0.798 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.393 0.607 32 H 0.106 0.894 33 H 0.128 0.872 34 H 0.268 0.732 35 H 0.118 0.882 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.377 20.833 5.152 22.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.162 4.162 3 C -0.235 4.235 4 C -0.104 4.104 5 O -0.066 6.066 6 C -0.078 4.078 7 C 0.092 3.908 8 N -0.394 5.394 9 C 0.025 3.975 10 C -0.160 4.160 11 C -0.210 4.210 12 C 0.062 3.938 13 O -0.092 6.092 14 C -0.464 4.464 15 H 0.105 0.895 16 C -0.166 4.166 17 N -0.506 5.506 18 Si 0.763 3.237 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.197 1.197 22 C -0.170 4.170 23 C -0.168 4.168 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.165 0.835 28 H 0.219 0.781 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.227 0.773 32 H 0.124 0.876 33 H 0.145 0.855 34 H 0.078 0.922 35 H 0.136 0.864 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.477 20.164 5.522 21.612 hybrid contribution -0.044 0.425 -1.232 1.304 sum 5.434 20.590 4.290 21.722 Atomic orbital electron populations 1.20240 0.88982 1.03019 1.02218 1.20337 0.97321 0.91942 1.06590 1.21745 0.92660 0.99850 1.09224 1.24033 0.99744 0.80794 1.05820 1.84052 1.28922 1.22591 1.71056 1.22286 0.80876 0.96487 1.08197 1.19396 1.00091 0.84998 0.86285 1.44178 1.79247 1.11182 1.04767 1.17353 1.02187 0.84537 0.93414 1.20227 1.05739 0.96235 0.93846 1.20991 1.06541 0.93758 0.99672 1.19245 0.95560 0.86015 0.92959 1.83986 1.74834 1.21518 1.28903 1.21192 1.43702 1.00598 0.80949 0.89489 1.25212 0.96614 0.95106 0.99715 1.70039 1.41559 1.06874 1.32086 0.85839 0.78934 0.78036 0.80917 1.19671 1.20424 1.19672 1.20019 1.06774 0.95619 0.94582 1.20172 1.06314 0.93573 0.96707 0.91355 0.91564 0.90973 0.83496 0.78120 0.89955 0.91356 0.77320 0.87593 0.85453 0.92239 0.86432 0.87105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.99 36.00 0.36 -0.43 16 2 C -0.16 -1.69 6.16 -104.75 -0.65 -2.34 16 3 C -0.22 -1.99 10.87 -39.70 -0.43 -2.42 16 4 C -0.04 -0.32 12.09 29.42 0.36 0.04 16 5 O -0.17 -2.00 10.65 5.72 0.06 -1.94 16 6 C -0.03 -0.33 6.69 -35.62 -0.24 -0.57 16 7 C 0.22 2.60 5.06 -5.20 -0.03 2.57 16 8 N -0.76 -10.49 5.73 -59.76 -0.34 -10.83 16 9 C 0.12 2.11 6.66 -83.70 -0.56 1.55 16 10 C -0.14 -2.57 9.89 -39.40 -0.39 -2.96 16 11 C -0.19 -4.17 9.16 -39.42 -0.36 -4.53 16 12 C 0.11 2.81 6.65 -39.09 -0.26 2.55 16 13 O -0.19 -5.45 9.76 -0.04 0.00 -5.45 16 14 C -0.39 -11.05 9.48 30.87 0.29 -10.75 16 15 H 0.09 2.29 5.20 -52.48 -0.27 2.01 16 16 C 0.04 1.03 5.49 -17.52 -0.10 0.93 16 17 N -0.87 -26.05 13.67 55.48 0.76 -25.29 16 18 Si 0.94 20.96 29.55 -169.99 -5.02 15.93 16 19 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 21 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 22 C -0.15 -3.19 9.98 -39.42 -0.39 -3.58 16 23 C -0.15 -2.61 9.31 -39.40 -0.37 -2.97 16 24 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.71 7.78 -51.93 -0.40 0.30 16 27 H 0.15 1.03 8.06 -52.49 -0.42 0.61 16 28 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 29 H 0.08 0.92 7.56 -51.93 -0.39 0.53 16 30 H 0.07 0.82 7.95 -51.93 -0.41 0.41 16 31 H 0.39 5.11 8.48 -40.82 -0.35 4.76 16 32 H 0.11 1.70 8.06 -52.48 -0.42 1.27 16 33 H 0.13 2.80 5.63 -52.49 -0.30 2.50 16 34 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.11 1.66 6.73 -52.49 -0.35 1.31 16 LS Contribution 314.31 15.07 4.74 4.74 Total: -1.00 -32.15 314.31 -6.72 -38.87 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -4.15 Total: 6.89 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: -2.76 Total: -22.91 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.42 Total: -36.13 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: 0.06 Total: -7.39 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.15 -6.72 -38.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135186516.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.354 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds