Wall clock time and date at job start Mon Mar 30 2020 01:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47360 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54259 * 291.62586 * 11 10 9 13 13 O 1.42106 * 110.54167 * 68.37612 * 11 10 9 14 14 N 1.65606 * 104.45103 * 179.97438 * 11 10 9 15 15 C 1.49730 * 126.16055 * 269.69190 * 14 11 10 16 16 C 1.52027 * 102.04602 * 153.32145 * 15 14 11 17 17 H 1.08998 * 112.10109 * 289.44508 * 16 15 14 18 18 C 1.51620 * 122.88539 * 152.53012 * 16 15 14 19 19 C 1.56315 * 101.79341 * 208.85087 * 18 16 15 20 20 C 1.55976 * 105.75887 * 25.53577 * 19 18 16 21 21 C 1.49858 * 103.99618 * 7.08023 * 20 19 18 22 22 H 1.08997 * 108.88391 * 77.48571 * 21 20 19 23 23 C 1.49461 * 126.15990 * 90.00074 * 14 11 10 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09000 * 110.85955 * 271.58754 * 15 14 11 30 30 H 1.08998 * 110.85760 * 35.24108 * 15 14 11 31 31 H 1.08993 * 110.96557 * 90.72678 * 18 16 15 32 32 H 1.08995 * 110.99777 * 326.99283 * 18 16 15 33 33 H 1.08993 * 110.19432 * 266.45797 * 19 18 16 34 34 H 1.09007 * 110.19354 * 144.59984 * 19 18 16 35 35 H 1.08999 * 110.51886 * 248.45607 * 20 19 18 36 36 H 1.08998 * 110.52377 * 125.70913 * 20 19 18 37 37 H 1.09003 * 110.43426 * 292.40645 * 23 14 11 38 38 H 1.09000 * 110.43465 * 54.89859 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6645 -5.4193 1.2385 13 8 0.6637 -5.4200 -1.2355 14 7 2.5202 -6.3928 0.0005 15 6 3.1455 -7.0162 -1.2088 16 6 4.5146 -7.4199 -0.6856 17 1 5.1534 -6.5566 -0.4993 18 6 5.3064 -8.5786 -1.2596 19 6 6.1385 -9.0420 -0.0201 20 6 5.3171 -8.6011 1.2304 21 6 4.0277 -8.0961 0.6575 22 1 3.4051 -8.9482 0.3850 23 6 3.1506 -7.0103 1.2068 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 2.5782 -7.8887 -1.5328 30 1 3.2375 -6.2899 -2.0162 31 1 5.9601 -8.2433 -2.0647 32 1 4.6434 -9.3725 -1.6032 33 1 7.1145 -8.5570 -0.0194 34 1 6.2562 -10.1257 -0.0297 35 1 5.8347 -7.8054 1.7663 36 1 5.1361 -9.4513 1.8880 37 1 3.7482 -6.2733 1.7433 38 1 2.3877 -7.4320 1.8612 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152576692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:42 Heat of formation + Delta-G solvation = -71.311636 kcal Electronic energy + Delta-G solvation = -19550.475961 eV Core-core repulsion = 16519.832223 eV Total energy + Delta-G solvation = -3030.643738 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.25961 -36.55775 -35.41657 -35.02262 -33.87471 -31.14261 -30.49006 -28.68718 -26.38974 -25.57563 -22.84820 -21.45631 -20.50119 -19.94172 -18.43731 -17.31034 -16.68448 -16.37073 -15.48688 -15.19370 -14.88041 -14.61587 -14.54565 -14.14768 -13.53616 -13.13280 -12.61529 -12.52174 -12.43831 -12.11185 -11.74218 -11.72496 -11.54605 -11.45224 -11.39951 -11.07630 -10.95457 -10.93760 -10.86639 -10.63252 -10.40482 -10.36755 -10.18803 -9.75533 -9.32307 -8.74964 -8.49837 -6.11841 -4.17416 0.76107 3.02602 3.26337 3.32448 3.35313 3.71974 4.31511 4.39529 4.47080 4.49710 4.65475 4.81581 5.02318 5.08938 5.10917 5.23262 5.30158 5.34875 5.44556 5.48393 5.57635 5.62402 5.70147 5.72170 5.77660 5.79316 5.87408 5.99063 6.13631 6.17255 6.29466 6.40205 6.50854 7.30915 7.37115 7.81121 8.18395 8.85917 9.47231 10.99244 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.004446 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.719328 B = 6295.743275 C = 6773.368072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.027 3.973 10 C -0.589 4.589 11 S 2.607 3.393 12 O -0.963 6.963 13 O -0.963 6.963 14 N -1.028 6.028 15 C 0.140 3.860 16 C -0.124 4.124 17 H 0.092 0.908 18 C -0.107 4.107 19 C -0.122 4.122 20 C -0.101 4.101 21 C -0.124 4.124 22 H 0.075 0.925 23 C 0.142 3.858 24 H 0.265 0.735 25 H 0.033 0.967 26 H 0.033 0.967 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.342 -17.799 -0.097 21.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.012 4.012 10 C -0.722 4.722 11 S 2.707 3.293 12 O -0.954 6.954 13 O -0.953 6.953 14 N -0.866 5.866 15 C 0.015 3.985 16 C -0.144 4.144 17 H 0.110 0.890 18 C -0.145 4.145 19 C -0.160 4.160 20 C -0.139 4.139 21 C -0.143 4.143 22 H 0.094 0.906 23 C 0.017 3.983 24 H 0.075 0.925 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.136 0.864 28 H 0.136 0.864 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 11.137 -17.829 -0.089 21.021 hybrid contribution 1.003 1.309 0.003 1.649 sum 12.140 -16.519 -0.087 20.501 Atomic orbital electron populations 1.69956 1.06122 1.27190 1.49592 1.25070 0.94972 0.99536 0.94906 0.86463 0.79701 0.82848 0.78230 1.20460 1.20987 1.19778 1.21003 0.93044 0.89770 1.52122 0.92078 1.18970 0.92735 0.90604 0.98853 1.30490 1.13691 1.18084 1.09925 1.05236 0.74147 0.75951 0.73999 1.93528 1.71107 1.85254 1.45483 1.93535 1.71011 1.85269 1.45529 1.60142 1.58705 1.55635 1.12100 1.21462 0.91775 0.98243 0.86976 1.22867 0.95843 0.98646 0.97064 0.88985 1.21903 0.98353 0.96968 0.97271 1.22956 0.98683 1.00793 0.93525 1.21374 0.94431 1.00748 0.97382 1.21936 0.96692 0.98177 0.97529 0.90619 1.20805 0.95767 0.94778 0.86938 0.92526 0.94843 0.94868 0.86363 0.86355 0.91087 0.90337 0.91280 0.91131 0.91489 0.91671 0.91266 0.91439 0.91450 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.03 0.71 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.62 6.12 37.16 0.23 -11.39 16 11 S 2.61 49.05 5.69 -107.50 -0.61 48.44 16 12 O -0.96 -20.74 17.65 -57.54 -1.02 -21.76 16 13 O -0.96 -20.71 17.64 -57.54 -1.02 -21.72 16 14 N -1.03 -14.73 3.73 -111.75 -0.42 -15.15 16 15 C 0.14 1.65 6.70 -2.74 -0.02 1.64 16 16 C -0.12 -1.17 3.19 -89.03 -0.28 -1.45 16 17 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 18 C -0.11 -0.78 6.60 -25.65 -0.17 -0.95 16 19 C -0.12 -0.80 6.95 -23.36 -0.16 -0.97 16 20 C -0.10 -0.75 6.72 -26.70 -0.18 -0.93 16 21 C -0.12 -1.16 2.63 -90.89 -0.24 -1.40 16 22 H 0.08 0.72 7.94 -51.93 -0.41 0.30 16 23 C 0.14 1.69 6.88 -3.89 -0.03 1.66 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 26 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 27 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 28 H 0.12 2.12 8.14 -51.92 -0.42 1.69 16 29 H 0.07 0.79 8.13 -51.93 -0.42 0.37 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 320.29 15.07 4.83 4.83 Total: -1.00 -34.33 320.29 -10.21 -44.54 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: -6.29 Total: -2.98 kcal Atomic # 6 Polarization: -25.13 SS G_CDS: -1.40 Total: -26.53 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.32 Total: -41.13 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -2.03 Total: -43.48 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 49.05 SS G_CDS: -0.61 Total: 48.44 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -34.33 -10.21 -44.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152576692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.773 kcal (2) G-P(sol) polarization free energy of solvation -34.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds