Wall clock time and date at job start Mon Mar 30 2020 01:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48499 * 109.47094 * 269.99976 * 3 2 1 5 5 H 1.48505 * 109.47195 * 29.99857 * 3 2 1 6 6 H 1.48493 * 109.47449 * 149.99822 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 S 1.81396 * 109.47360 * 179.97438 * 10 9 7 12 12 O 1.42094 * 110.54259 * 291.62586 * 11 10 9 13 13 O 1.42106 * 110.54167 * 68.37612 * 11 10 9 14 14 N 1.65606 * 104.45103 * 179.97438 * 11 10 9 15 15 C 1.49730 * 126.16055 * 269.69190 * 14 11 10 16 16 C 1.52027 * 102.04602 * 153.32145 * 15 14 11 17 17 H 1.08998 * 112.10109 * 289.44508 * 16 15 14 18 18 C 1.51620 * 122.88539 * 152.53012 * 16 15 14 19 19 C 1.56315 * 101.79341 * 208.85087 * 18 16 15 20 20 C 1.55976 * 105.75887 * 25.53577 * 19 18 16 21 21 C 1.49858 * 103.99618 * 7.08023 * 20 19 18 22 22 H 1.08997 * 108.88391 * 77.48571 * 21 20 19 23 23 C 1.49461 * 126.15990 * 90.00074 * 14 11 10 24 24 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09000 * 110.85955 * 271.58754 * 15 14 11 30 30 H 1.08998 * 110.85760 * 35.24108 * 15 14 11 31 31 H 1.08993 * 110.96557 * 90.72678 * 18 16 15 32 32 H 1.08995 * 110.99777 * 326.99283 * 18 16 15 33 33 H 1.08993 * 110.19432 * 266.45797 * 19 18 16 34 34 H 1.09007 * 110.19354 * 144.59984 * 19 18 16 35 35 H 1.08999 * 110.51886 * 248.45607 * 20 19 18 36 36 H 1.08998 * 110.52377 * 125.70913 * 20 19 18 37 37 H 1.09003 * 110.43426 * 292.40645 * 23 14 11 38 38 H 1.09000 * 110.43465 * 54.89859 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6645 -5.4193 1.2385 13 8 0.6637 -5.4200 -1.2355 14 7 2.5202 -6.3928 0.0005 15 6 3.1455 -7.0162 -1.2088 16 6 4.5146 -7.4199 -0.6856 17 1 5.1534 -6.5566 -0.4993 18 6 5.3064 -8.5786 -1.2596 19 6 6.1385 -9.0420 -0.0201 20 6 5.3171 -8.6011 1.2304 21 6 4.0277 -8.0961 0.6575 22 1 3.4051 -8.9482 0.3850 23 6 3.1506 -7.0103 1.2068 24 1 -0.4850 0.8401 0.0004 25 1 0.6239 -2.5567 0.8903 26 1 0.6246 -2.5571 -0.8897 27 1 2.8718 -3.6044 -0.8895 28 1 2.8718 -3.6044 0.8904 29 1 2.5782 -7.8887 -1.5328 30 1 3.2375 -6.2899 -2.0162 31 1 5.9601 -8.2433 -2.0647 32 1 4.6434 -9.3725 -1.6032 33 1 7.1145 -8.5570 -0.0194 34 1 6.2562 -10.1257 -0.0297 35 1 5.8347 -7.8054 1.7663 36 1 5.1361 -9.4513 1.8880 37 1 3.7482 -6.2733 1.7433 38 1 2.3877 -7.4320 1.8612 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152576692.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:42 Heat of formation + Delta-G solvation = -94.951803 kcal Electronic energy + Delta-G solvation = -19551.501075 eV Core-core repulsion = 16519.832223 eV Total energy + Delta-G solvation = -3031.668852 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.04335 -38.20573 -37.05576 -35.94994 -35.86367 -33.15052 -31.25259 -29.57126 -27.60090 -27.14858 -23.95763 -23.18837 -21.24120 -20.61625 -19.89615 -18.98976 -18.13634 -17.69811 -17.08300 -16.55132 -16.50579 -15.59253 -15.43879 -15.22899 -15.02231 -14.48422 -14.21905 -13.75864 -13.42661 -13.36421 -13.25183 -13.19966 -13.11545 -12.94483 -12.81223 -12.36122 -12.27611 -12.15972 -11.99338 -11.84349 -11.67930 -11.60042 -11.21536 -11.15406 -10.92450 -10.66502 -9.97837 -8.27662 -6.42317 -0.76989 1.39920 1.42126 1.53299 1.68936 2.36991 2.82862 2.85378 3.05630 3.32368 3.66723 3.80020 4.00466 4.06417 4.13703 4.28785 4.38306 4.44856 4.53487 4.61090 4.70888 4.73712 4.76702 4.87086 4.93593 5.06902 5.13941 5.19751 5.23070 5.25074 5.28769 5.30868 5.41888 5.55349 5.59942 5.66021 6.03802 6.71021 7.28041 8.84762 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.027291 B = 0.004446 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.719328 B = 6295.743275 C = 6773.368072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.540 4.540 8 H 0.075 0.925 9 C 0.020 3.980 10 C -0.585 4.585 11 S 2.631 3.369 12 O -0.995 6.995 13 O -0.994 6.994 14 N -1.025 6.025 15 C 0.128 3.872 16 C -0.119 4.119 17 H 0.094 0.906 18 C -0.104 4.104 19 C -0.117 4.117 20 C -0.099 4.099 21 C -0.118 4.118 22 H 0.075 0.925 23 C 0.131 3.869 24 H 0.268 0.732 25 H 0.006 0.994 26 H 0.006 0.994 27 H 0.139 0.861 28 H 0.139 0.861 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.279 -18.499 -0.142 23.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.202 4.202 3 Si 0.800 3.200 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.181 1.181 7 C -0.579 4.579 8 H 0.093 0.907 9 C -0.019 4.019 10 C -0.717 4.717 11 S 2.731 3.269 12 O -0.985 6.985 13 O -0.984 6.984 14 N -0.865 5.865 15 C 0.005 3.995 16 C -0.139 4.139 17 H 0.112 0.888 18 C -0.142 4.142 19 C -0.155 4.155 20 C -0.137 4.137 21 C -0.138 4.138 22 H 0.093 0.907 23 C 0.007 3.993 24 H 0.077 0.923 25 H 0.024 0.976 26 H 0.024 0.976 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 14.083 -18.531 -0.135 23.275 hybrid contribution 0.087 1.429 0.016 1.432 sum 14.170 -17.101 -0.119 22.210 Atomic orbital electron populations 1.70106 1.08130 1.28400 1.50761 1.26142 0.95873 1.03957 0.94254 0.85278 0.78605 0.77466 0.78690 1.19501 1.20741 1.18140 1.21501 0.93948 0.90739 1.51736 0.90659 1.18833 0.93613 0.93139 0.96310 1.30372 1.12746 1.16562 1.12023 1.04134 0.74253 0.75941 0.72584 1.93478 1.72596 1.85749 1.46714 1.93486 1.72475 1.85761 1.46723 1.59764 1.58194 1.54217 1.14328 1.21762 0.93292 0.98379 0.86094 1.22855 0.94601 0.99500 0.96917 0.88801 1.21934 0.98298 0.96051 0.97920 1.22940 0.98573 1.01592 0.92382 1.21414 0.93166 1.01149 0.97988 1.21919 0.97216 0.97198 0.97503 0.90666 1.21070 0.96171 0.95968 0.86068 0.92329 0.97564 0.97566 0.84239 0.84281 0.90523 0.90133 0.90354 0.90765 0.90745 0.90543 0.90956 0.90491 0.90225 0.91277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.50 13.29 21.45 0.28 -57.22 16 2 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 3 Si 0.98 43.55 29.54 68.60 2.03 45.57 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 7 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 8 H 0.08 3.91 7.74 -2.91 -0.02 3.89 16 9 C 0.02 1.07 4.98 29.85 0.15 1.22 16 10 C -0.58 -23.05 6.12 71.98 0.44 -22.61 16 11 S 2.63 100.36 5.69 -56.49 -0.32 100.04 16 12 O -0.99 -43.90 17.65 -127.65 -2.25 -46.15 16 13 O -0.99 -43.71 17.64 -127.65 -2.25 -45.97 16 14 N -1.02 -28.48 3.73 -507.46 -1.89 -30.37 16 15 C 0.13 2.84 6.70 85.43 0.57 3.41 16 16 C -0.12 -1.93 3.19 -9.77 -0.03 -1.96 16 17 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 18 C -0.10 -1.20 6.60 31.30 0.21 -1.00 16 19 C -0.12 -1.14 6.95 32.78 0.23 -0.91 16 20 C -0.10 -1.16 6.72 30.62 0.21 -0.96 16 21 C -0.12 -1.95 2.63 -10.97 -0.03 -1.98 16 22 H 0.07 1.26 7.94 -2.39 -0.02 1.24 16 23 C 0.13 2.94 6.88 84.84 0.58 3.53 16 24 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 25 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 26 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 28 H 0.14 4.84 8.14 -2.39 -0.02 4.82 16 29 H 0.08 1.61 8.13 -2.39 -0.02 1.59 16 30 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -75.11 320.29 -0.37 -75.48 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 1.02 Total: 9.83 kcal Atomic # 6 Polarization: -54.24 SS G_CDS: 3.02 Total: -51.22 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -1.61 Total: -87.59 kcal Atomic # 8 Polarization: -87.61 SS G_CDS: -4.51 Total: -92.12 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: 100.36 SS G_CDS: -0.32 Total: 100.04 kcal Total: -75.11 -0.37 -75.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152576692.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.474 kcal (2) G-P(sol) polarization free energy of solvation -75.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds