Wall clock time and date at job start Mon Mar 30 2020 01:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 119.99575 * 2 1 4 4 H 1.48502 * 109.47023 * 179.97438 * 3 2 1 5 5 H 1.48491 * 109.47356 * 299.99972 * 3 2 1 6 6 H 1.48506 * 109.47321 * 60.00083 * 3 2 1 7 7 C 1.37872 * 119.99917 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99736 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00156 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46926 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.46975 * 179.97438 * 10 9 7 12 12 O 1.42104 * 110.54181 * 68.37350 * 11 10 9 13 13 O 1.42104 * 110.54492 * 291.62437 * 11 10 9 14 14 N 1.65605 * 104.44919 * 179.97438 * 11 10 9 15 15 C 1.49243 * 126.07519 * 90.00197 * 14 11 10 16 16 C 1.49874 * 104.68595 * 186.50659 * 15 14 11 17 17 H 1.08993 * 108.90175 * 78.07877 * 16 15 14 18 18 C 1.50016 * 127.32878 * 211.85523 * 16 15 14 19 19 C 1.56195 * 103.78320 * 149.40353 * 18 16 15 20 20 C 1.56448 * 105.58510 * 353.12897 * 19 18 16 21 21 C 1.51811 * 101.47302 * 333.52857 * 20 19 18 22 22 H 1.08997 * 111.91678 * 289.60736 * 21 20 19 23 23 C 1.49599 * 126.07824 * 269.97405 * 14 11 10 24 24 H 0.96996 * 119.99795 * 0.02562 * 1 2 3 25 25 H 1.08993 * 109.46931 * 60.00004 * 9 7 2 26 26 H 1.08999 * 109.47192 * 299.99771 * 9 7 2 27 27 H 1.09005 * 109.47222 * 59.99920 * 10 9 7 28 28 H 1.08999 * 109.46801 * 299.99768 * 10 9 7 29 29 H 1.09000 * 110.39829 * 67.70647 * 15 14 11 30 30 H 1.09007 * 110.49280 * 305.35310 * 15 14 11 31 31 H 1.09003 * 110.56305 * 267.97195 * 18 16 15 32 32 H 1.09000 * 110.56851 * 30.82551 * 18 16 15 33 33 H 1.08994 * 110.22493 * 112.15724 * 19 18 16 34 34 H 1.09000 * 110.22060 * 234.10272 * 19 18 16 35 35 H 1.09008 * 111.02283 * 215.48378 * 20 19 18 36 36 H 1.08999 * 111.05844 * 91.59390 * 20 19 18 37 37 H 1.08994 * 110.80849 * 324.02887 * 23 14 11 38 38 H 1.09006 * 110.80376 * 87.53665 * 23 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0017 10 6 2.2454 -3.6620 -0.0015 11 16 1.3384 -5.2330 -0.0021 12 8 0.6650 -5.4194 -1.2394 13 8 0.6639 -5.4199 1.2346 14 7 2.5207 -6.3927 -0.0025 15 6 3.1480 -7.0086 1.2036 16 6 4.2539 -7.8630 0.6622 17 1 5.0991 -7.2250 0.4043 18 6 4.7726 -9.1494 1.2337 19 6 5.2570 -9.9451 -0.0200 20 6 4.8048 -9.0986 -1.2556 21 6 3.6053 -8.3583 -0.6918 22 1 2.7599 -9.0246 -0.5201 23 6 3.1493 -7.0095 -1.2118 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5562 -0.8919 26 1 0.6241 -2.5575 0.8880 27 1 2.8714 -3.6046 0.8891 28 1 2.8727 -3.6038 -0.8910 29 1 2.4221 -7.6209 1.7386 30 1 3.5506 -6.2373 1.8603 31 1 5.6049 -8.9592 1.9115 32 1 3.9763 -9.6895 1.7459 33 1 6.3425 -10.0434 -0.0076 34 1 4.7890 -10.9291 -0.0457 35 1 4.5124 -9.7428 -2.0849 36 1 5.5861 -8.4025 -1.5605 37 1 2.4170 -7.1297 -2.0101 38 1 3.9996 -6.4176 -1.5507 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152576779.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:43 Heat of formation + Delta-G solvation = -95.352704 kcal Electronic energy + Delta-G solvation = -19511.950988 eV Core-core repulsion = 16480.264751 eV Total energy + Delta-G solvation = -3031.686237 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05228 -38.20707 -37.05565 -35.95431 -35.87234 -33.14990 -31.26486 -29.57688 -27.59935 -27.14527 -23.93905 -23.20636 -21.26440 -20.61860 -19.89936 -19.00448 -18.14363 -17.69670 -17.08361 -16.54153 -16.51523 -15.57937 -15.44666 -15.23978 -15.02072 -14.50277 -14.20345 -13.75604 -13.42557 -13.36733 -13.24888 -13.21375 -13.12442 -12.96590 -12.80653 -12.36152 -12.28405 -12.13252 -11.98970 -11.83518 -11.68847 -11.59535 -11.25697 -11.12894 -10.92386 -10.67545 -9.96906 -8.27972 -6.42583 -0.76858 1.39903 1.40836 1.54226 1.68959 2.36757 2.82537 2.85527 3.05331 3.32570 3.67542 3.79848 4.00399 4.06562 4.12640 4.28515 4.36668 4.44433 4.55393 4.61319 4.70649 4.74092 4.76540 4.86717 4.93955 5.07709 5.13164 5.18923 5.23092 5.24507 5.28943 5.29958 5.41560 5.55296 5.59029 5.66052 6.03611 6.71046 7.27840 8.84635 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.032671 B = 0.004195 C = 0.004009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.811005 B = 6673.688936 C = 6981.802060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.977 3.023 4 H -0.256 1.256 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.539 4.539 8 H 0.075 0.925 9 C 0.019 3.981 10 C -0.586 4.586 11 S 2.631 3.369 12 O -0.994 6.994 13 O -0.995 6.995 14 N -1.023 6.023 15 C 0.132 3.868 16 C -0.118 4.118 17 H 0.086 0.914 18 C -0.100 4.100 19 C -0.118 4.118 20 C -0.101 4.101 21 C -0.119 4.119 22 H 0.081 0.919 23 C 0.121 3.879 24 H 0.268 0.732 25 H 0.006 0.994 26 H 0.006 0.994 27 H 0.139 0.861 28 H 0.140 0.860 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.580 -19.340 -0.173 24.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.203 4.203 3 Si 0.800 3.200 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.578 4.578 8 H 0.094 0.906 9 C -0.019 4.019 10 C -0.718 4.718 11 S 2.731 3.269 12 O -0.985 6.985 13 O -0.985 6.985 14 N -0.863 5.863 15 C 0.008 3.992 16 C -0.138 4.138 17 H 0.105 0.895 18 C -0.138 4.138 19 C -0.155 4.155 20 C -0.140 4.140 21 C -0.139 4.139 22 H 0.099 0.901 23 C -0.002 4.002 24 H 0.077 0.923 25 H 0.025 0.975 26 H 0.024 0.976 27 H 0.157 0.843 28 H 0.158 0.842 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.407 -19.353 -0.170 23.544 hybrid contribution 0.096 1.491 0.043 1.495 sum 13.503 -17.862 -0.127 22.392 Atomic orbital electron populations 1.70116 1.08117 1.28334 1.50847 1.26149 0.95887 1.03976 0.94280 0.85224 0.79106 0.77798 0.77866 1.17915 1.20257 1.20282 1.21535 0.93962 0.90736 1.51594 0.90643 1.18838 0.93627 0.93161 0.96324 1.30384 1.12754 1.16588 1.12046 1.04126 0.74293 0.75910 0.72580 1.93480 1.72544 1.85759 1.46670 1.93482 1.72553 1.85734 1.46741 1.59683 1.57919 1.54502 1.14245 1.20982 0.95170 0.97006 0.86031 1.21967 0.97253 0.97506 0.97114 0.89547 1.21495 1.00902 0.93432 0.98013 1.23001 1.01602 0.98512 0.92409 1.22002 0.95459 0.98635 0.97874 1.22752 0.98855 0.94975 0.97333 0.90088 1.21727 0.98077 0.94148 0.86248 0.92335 0.97532 0.97573 0.84265 0.84196 0.91691 0.90190 0.90165 0.91487 0.90250 0.91009 0.90574 0.90152 0.90714 0.89189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 2 C 0.00 -0.26 5.46 84.65 0.46 0.20 16 3 Si 0.98 43.60 29.54 68.60 2.03 45.63 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.54 -30.40 9.11 25.60 0.23 -30.16 16 8 H 0.08 3.93 7.74 -2.91 -0.02 3.91 16 9 C 0.02 1.04 4.98 29.85 0.15 1.19 16 10 C -0.59 -23.07 6.12 71.98 0.44 -22.63 16 11 S 2.63 100.40 5.68 -56.49 -0.32 100.08 16 12 O -0.99 -43.72 17.36 -127.65 -2.22 -45.94 16 13 O -0.99 -43.94 17.64 -127.65 -2.25 -46.19 16 14 N -1.02 -28.46 3.73 -509.31 -1.90 -30.36 16 15 C 0.13 2.97 6.85 84.84 0.58 3.55 16 16 C -0.12 -1.92 2.63 -10.95 -0.03 -1.95 16 17 H 0.09 1.28 7.95 -2.39 -0.02 1.26 16 18 C -0.10 -1.20 6.74 30.74 0.21 -0.99 16 19 C -0.12 -1.15 6.96 32.91 0.23 -0.92 16 20 C -0.10 -1.17 6.58 31.41 0.21 -0.97 16 21 C -0.12 -2.04 3.17 -9.84 -0.03 -2.07 16 22 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 23 C 0.12 2.69 6.84 85.31 0.58 3.27 16 24 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 25 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.14 4.83 8.14 -2.39 -0.02 4.81 16 28 H 0.14 4.85 8.14 -2.39 -0.02 4.83 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 34 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.08 0.83 8.13 -2.39 -0.02 0.81 16 37 H 0.07 1.81 7.75 -2.39 -0.02 1.79 16 38 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 Total: -1.00 -75.36 319.73 -0.33 -75.69 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 1.02 Total: 9.80 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 3.03 Total: -51.47 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -1.61 Total: -87.59 kcal Atomic # 8 Polarization: -87.66 SS G_CDS: -4.47 Total: -92.13 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 100.40 SS G_CDS: -0.32 Total: 100.08 kcal Total: -75.36 -0.33 -75.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152576779.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.667 kcal (2) G-P(sol) polarization free energy of solvation -75.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds