Wall clock time and date at job start Mon Mar 30 2020 01:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86798 * 120.00159 * 2 1 4 4 H 1.48500 * 109.47267 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46910 * 299.99436 * 3 2 1 6 6 H 1.48494 * 109.47498 * 59.99383 * 3 2 1 7 7 C 1.38693 * 119.99570 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99936 * 180.02562 * 7 2 1 9 9 O 1.34818 * 120.00642 * 0.02562 * 7 2 1 10 10 C 1.35519 * 117.00123 * 185.06428 * 9 7 2 11 11 C 1.38831 * 120.16246 * 354.39673 * 10 9 7 12 12 C 1.38026 * 120.07207 * 180.02562 * 11 10 9 13 13 C 1.38580 * 120.40073 * 0.02562 * 12 11 10 14 14 C 1.37830 * 120.32044 * 0.02562 * 13 12 11 15 15 C 1.39666 * 119.92216 * 359.97438 * 14 13 12 16 16 C 1.47535 * 120.19596 * 179.97438 * 15 14 13 17 17 O 1.21590 * 120.00105 * 180.02562 * 16 15 14 18 18 N 1.34780 * 119.99849 * 0.02562 * 16 15 14 19 19 C 1.46501 * 119.99510 * 180.02562 * 18 16 15 20 20 C 1.54635 * 111.03806 * 267.02450 * 19 18 16 21 21 C 1.51105 * 104.72515 * 217.33928 * 20 19 18 22 22 C 1.30524 * 111.10339 * 16.43427 * 21 20 19 23 23 C 1.51102 * 111.10721 * 0.02562 * 22 21 20 24 24 H 0.96998 * 119.99271 * 0.02562 * 1 2 3 25 25 H 1.07998 * 119.96666 * 0.02562 * 11 10 9 26 26 H 1.07999 * 119.80172 * 179.71988 * 12 11 10 27 27 H 1.07992 * 119.83573 * 179.97438 * 13 12 11 28 28 H 1.08003 * 120.03669 * 179.97438 * 14 13 12 29 29 H 0.96994 * 120.00405 * 0.02562 * 18 16 15 30 30 H 1.08999 * 110.91851 * 31.03697 * 19 18 16 31 31 H 1.09002 * 110.38828 * 336.14701 * 20 19 18 32 32 H 1.08997 * 110.38741 * 98.52814 * 20 19 18 33 33 H 1.08002 * 124.44558 * 196.46371 * 21 20 19 34 34 H 1.08004 * 124.44245 * 180.02562 * 22 21 20 35 35 H 1.09003 * 110.38814 * 224.75131 * 23 22 21 36 36 H 1.08998 * 110.38918 * 102.37205 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7093 1.3463 -0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2123 7 6 2.0086 -1.2012 0.0005 8 1 3.0887 -1.2012 0.0010 9 8 1.3346 -2.3688 0.0005 10 6 2.0686 -3.5029 0.1077 11 6 3.4554 -3.4402 0.0942 12 6 4.2011 -4.5966 0.2029 13 6 3.5742 -5.8264 0.3255 14 6 2.1984 -5.9077 0.3397 15 6 1.4307 -4.7461 0.2306 16 6 -0.0424 -4.8262 0.2445 17 8 -0.7074 -3.8127 0.1488 18 7 -0.6511 -6.0228 0.3632 19 6 -2.1139 -6.1024 0.3765 20 6 -2.6587 -6.0673 1.8233 21 6 -3.8312 -7.0205 1.8154 22 6 -3.7984 -7.7972 0.7669 23 6 -2.5983 -7.4920 -0.0990 24 1 -0.4849 0.8401 -0.0004 25 1 3.9513 -2.4856 -0.0015 26 1 5.2797 -4.5432 0.1873 27 1 4.1666 -6.7254 0.4095 28 1 1.7146 -6.8686 0.4350 29 1 -0.1208 -6.8313 0.4399 30 1 -2.5524 -5.3074 -0.2267 31 1 -1.8969 -6.4084 2.5243 32 1 -2.9892 -5.0610 2.0803 33 1 -4.5961 -7.0543 2.5771 34 1 -4.5327 -8.5581 0.5472 35 1 -2.8876 -7.4539 -1.1492 36 1 -1.8195 -8.2391 0.0543 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160773357.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:48 Heat of formation + Delta-G solvation = -35.923333 kcal Electronic energy + Delta-G solvation = -20389.745877 eV Core-core repulsion = 17225.192740 eV Total energy + Delta-G solvation = -3164.553137 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.38581 -40.27163 -38.81854 -38.00530 -34.84114 -34.31763 -32.09446 -30.57180 -29.16695 -28.78050 -27.34203 -24.71318 -23.21726 -21.85971 -21.54443 -19.84804 -19.72111 -19.13739 -17.91182 -17.42674 -16.77557 -16.33540 -16.10896 -15.93876 -15.71428 -15.35082 -15.07181 -14.61596 -14.24346 -13.77548 -13.71452 -13.54927 -13.08921 -13.05185 -12.86682 -12.68585 -12.54381 -12.44303 -12.27097 -12.10773 -12.09647 -11.42891 -10.85151 -10.63372 -10.09508 -9.83447 -9.76363 -9.03956 -8.45419 -6.16534 0.12108 0.72633 1.31802 1.35963 1.42621 1.51910 2.08810 2.15223 2.25714 2.87171 3.21936 3.46615 3.60359 3.74801 3.98260 4.07733 4.13028 4.29068 4.35392 4.45425 4.53173 4.64209 4.74206 4.81195 4.94237 4.97521 5.02585 5.06037 5.08532 5.14619 5.48176 5.58315 5.60785 5.64034 5.69653 5.95761 5.98994 6.17184 6.70694 6.94046 7.49191 7.80140 8.75518 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017980 B = 0.005373 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.929264 B = 5209.990341 C = 6580.506669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.023 4.023 3 Si 1.023 2.977 4 H -0.245 1.245 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.427 4.427 8 H 0.107 0.893 9 O -0.190 6.190 10 C 0.148 3.852 11 C -0.258 4.258 12 C -0.040 4.040 13 C -0.200 4.200 14 C -0.029 4.029 15 C -0.246 4.246 16 C 0.548 3.452 17 O -0.569 6.569 18 N -0.708 5.708 19 C 0.133 3.867 20 C -0.118 4.118 21 C -0.170 4.170 22 C -0.154 4.154 23 C -0.097 4.097 24 H 0.270 0.730 25 H 0.123 0.877 26 H 0.154 0.846 27 H 0.165 0.835 28 H 0.162 0.838 29 H 0.413 0.587 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.044 0.956 33 H 0.142 0.858 34 H 0.157 0.843 35 H 0.085 0.915 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.783 -17.944 1.818 18.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.222 4.222 3 Si 0.842 3.158 4 H -0.168 1.168 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.503 4.503 8 H 0.125 0.875 9 O -0.092 6.092 10 C 0.093 3.907 11 C -0.277 4.277 12 C -0.058 4.058 13 C -0.218 4.218 14 C -0.048 4.048 15 C -0.251 4.251 16 C 0.338 3.662 17 O -0.448 6.448 18 N -0.363 5.363 19 C 0.027 3.973 20 C -0.157 4.157 21 C -0.188 4.188 22 C -0.172 4.172 23 C -0.135 4.135 24 H 0.079 0.921 25 H 0.140 0.860 26 H 0.172 0.828 27 H 0.183 0.817 28 H 0.179 0.821 29 H 0.251 0.749 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.160 0.840 34 H 0.174 0.826 35 H 0.103 0.897 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.880 -17.023 1.712 17.132 hybrid contribution 0.180 1.148 0.065 1.164 sum 1.059 -15.875 1.777 16.009 Atomic orbital electron populations 1.70340 1.08415 1.28496 1.47000 1.26779 0.96740 1.03168 0.95531 0.84489 0.78443 0.74405 0.78508 1.16768 1.19347 1.19403 1.22092 0.92711 0.81825 1.53687 0.87543 1.84182 1.35200 1.12189 1.77657 1.20111 0.91709 0.87594 0.91330 1.21297 0.92281 1.00992 1.13133 1.21445 1.00726 0.91277 0.92360 1.21189 0.93932 0.98435 1.08274 1.21317 0.94465 0.95587 0.93384 1.19310 0.92321 0.92947 1.20475 1.18589 0.88269 0.83497 0.75841 1.90928 1.67135 1.36582 1.50171 1.45600 1.06637 1.08136 1.75884 1.21760 0.79911 0.99138 0.96451 1.21788 0.97728 0.98938 0.97201 1.23276 0.98122 0.97292 1.00143 1.23390 0.98172 1.00196 0.95471 1.21602 0.97593 0.93847 1.00414 0.92058 0.85964 0.82825 0.81721 0.82102 0.74876 0.92048 0.90108 0.93747 0.84045 0.82590 0.89685 0.87723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -60.14 13.67 21.62 0.30 -59.84 16 2 C -0.02 -1.40 5.49 84.85 0.47 -0.93 16 3 Si 1.02 44.76 29.55 68.60 2.03 46.78 16 4 H -0.24 -9.65 7.11 99.48 0.71 -8.94 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 7 C -0.43 -26.19 9.49 67.93 0.64 -25.54 16 8 H 0.11 5.85 5.21 -2.91 -0.02 5.84 16 9 O -0.19 -12.26 7.84 0.82 0.01 -12.25 16 10 C 0.15 7.71 6.66 22.91 0.15 7.87 16 11 C -0.26 -11.11 9.16 22.36 0.20 -10.90 16 12 C -0.04 -1.24 10.03 22.30 0.22 -1.02 16 13 C -0.20 -5.29 10.03 22.25 0.22 -5.06 16 14 C -0.03 -0.87 9.53 22.52 0.21 -0.66 16 15 C -0.25 -10.78 5.89 -19.99 -0.12 -10.90 16 16 C 0.55 25.33 7.76 86.69 0.67 26.00 16 17 O -0.57 -34.36 14.81 16.90 0.25 -34.10 16 18 N -0.71 -22.79 5.10 -440.39 -2.25 -25.04 16 19 C 0.13 4.05 3.54 46.11 0.16 4.21 16 20 C -0.12 -3.41 6.55 30.53 0.20 -3.21 16 21 C -0.17 -3.60 10.78 26.27 0.28 -3.31 16 22 C -0.15 -2.72 10.77 26.26 0.28 -2.43 16 23 C -0.10 -1.91 6.54 30.54 0.20 -1.71 16 24 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 25 H 0.12 5.36 5.64 -2.91 -0.02 5.34 16 26 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 27 H 0.17 2.77 8.06 -2.91 -0.02 2.75 16 28 H 0.16 3.17 6.40 -2.91 -0.02 3.15 16 29 H 0.41 9.40 6.46 -92.71 -0.60 8.80 16 30 H 0.06 2.37 7.54 -2.39 -0.02 2.35 16 31 H 0.08 2.23 8.08 -2.39 -0.02 2.21 16 32 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.14 2.44 8.06 -2.91 -0.02 2.41 16 34 H 0.16 1.84 8.06 -2.91 -0.02 1.81 16 35 H 0.08 1.57 8.14 -2.39 -0.02 1.56 16 36 H 0.10 1.55 7.81 -2.39 -0.02 1.53 16 Total: -1.00 -88.49 308.46 4.66 -83.83 By element: Atomic # 1 Polarization: 27.71 SS G_CDS: 0.51 Total: 28.23 kcal Atomic # 6 Polarization: -31.42 SS G_CDS: 3.81 Total: -27.61 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -1.95 Total: -84.88 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: 0.26 Total: -46.35 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -88.49 4.66 -83.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160773357.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.908 kcal (2) G-P(sol) polarization free energy of solvation -88.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds