Wall clock time and date at job start Mon Mar 30 2020 01:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41386 * 126.57407 * 2 1 4 4 C 1.34519 * 106.83873 * 179.97438 * 3 2 1 5 5 O 1.34305 * 108.41682 * 359.72999 * 4 3 2 6 6 C 1.34299 * 109.47923 * 0.44208 * 5 4 3 7 7 C 1.50704 * 125.78923 * 179.81931 * 6 5 4 8 8 N 1.46493 * 109.47392 * 269.69177 * 7 6 5 9 9 C 1.39678 * 120.00147 * 179.97438 * 8 7 6 10 10 C 1.39002 * 120.03831 * 359.73358 * 9 8 7 11 11 C 1.38151 * 120.06169 * 179.69902 * 10 9 8 12 12 C 1.38173 * 120.13970 * 0.59273 * 11 10 9 13 13 C 1.38912 * 120.07760 * 359.68042 * 12 11 10 14 14 O 1.35752 * 120.02824 * 179.97438 * 13 12 11 15 15 C 1.34837 * 116.99878 * 174.48534 * 14 13 12 16 16 H 1.07990 * 120.00190 * 5.05841 * 15 14 13 17 17 C 1.38651 * 119.99704 * 185.06063 * 15 14 13 18 18 N 1.31556 * 120.00285 * 359.97438 * 17 15 14 19 19 Si 1.86806 * 119.99748 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47187 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47125 * 119.99965 * 19 17 15 22 22 H 1.48500 * 109.46997 * 239.99640 * 19 17 15 23 23 C 1.38746 * 120.03975 * 180.02562 * 9 8 7 24 24 H 1.08990 * 109.47534 * 270.04310 * 1 2 3 25 25 H 1.08998 * 109.46830 * 30.05186 * 1 2 3 26 26 H 1.09007 * 109.46361 * 150.04259 * 1 2 3 27 27 H 1.07991 * 126.58381 * 359.97438 * 3 2 1 28 28 H 1.07997 * 125.78978 * 180.02562 * 4 3 2 29 29 H 1.08995 * 109.46992 * 29.70039 * 7 6 5 30 30 H 1.09003 * 109.46490 * 149.69249 * 7 6 5 31 31 H 0.97007 * 120.00079 * 0.02562 * 8 7 6 32 32 H 1.08000 * 119.96816 * 359.97038 * 10 9 8 33 33 H 1.07998 * 119.92684 * 180.27043 * 11 10 9 34 34 H 1.08002 * 119.95967 * 179.70528 * 12 11 10 35 35 H 0.97000 * 120.00146 * 180.02562 * 18 17 15 36 36 H 1.08004 * 120.07433 * 359.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1354 0.0000 4 6 3.6157 0.6812 0.0006 5 8 3.5848 -0.6615 0.0069 6 6 2.3087 -1.0801 0.0007 7 6 1.8523 -2.5164 0.0009 8 7 1.7050 -2.9822 -1.3802 9 6 1.2897 -4.2912 -1.6352 10 6 1.0214 -5.1543 -0.5791 11 6 0.6047 -6.4472 -0.8308 12 6 0.4651 -6.8902 -2.1321 13 6 0.7371 -6.0343 -3.1919 14 8 0.6000 -6.4708 -4.4700 15 6 0.7684 -5.5595 -5.4494 16 1 1.0811 -4.5553 -5.2047 17 6 0.5399 -5.9118 -6.7708 18 7 0.1594 -7.1353 -7.0691 19 14 0.7739 -4.6495 -8.1278 20 1 1.2029 -3.3579 -7.5338 21 1 1.8122 -5.1282 -9.0755 22 1 -0.5080 -4.4589 -8.8529 23 6 1.1504 -4.7333 -2.9429 24 1 -0.3634 0.0008 1.0275 25 1 -0.3633 0.8895 -0.5146 26 1 -0.3632 -0.8905 -0.5132 27 1 2.0366 2.1690 -0.0004 28 1 4.5060 1.2925 0.0011 29 1 2.5902 -3.1319 0.5153 30 1 0.8939 -2.5929 0.5144 31 1 1.8965 -2.3817 -2.1176 32 1 1.1346 -4.8125 0.4391 33 1 0.3927 -7.1146 -0.0086 34 1 0.1437 -7.9030 -2.3255 35 1 -0.0001 -7.3819 -7.9936 36 1 1.3623 -4.0661 -3.7653 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166378734.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:36 Heat of formation + Delta-G solvation = 14.395002 kcal Electronic energy + Delta-G solvation = -19779.196161 eV Core-core repulsion = 16616.824990 eV Total energy + Delta-G solvation = -3162.371170 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.76867 -39.03682 -37.09862 -35.05056 -34.03701 -32.18677 -31.13678 -29.30256 -28.47538 -27.28131 -25.22661 -24.99722 -21.82134 -21.58095 -20.70107 -19.80771 -17.91384 -17.61816 -16.92196 -16.22777 -15.65444 -15.05546 -14.85252 -14.58239 -14.16572 -13.93300 -13.60088 -13.37877 -13.27431 -13.08107 -12.91630 -12.74696 -12.50112 -12.25972 -11.63941 -11.61490 -11.36005 -10.95789 -10.78171 -10.59193 -10.37411 -9.79272 -9.44623 -9.36618 -8.74731 -8.61749 -7.34330 -6.79619 -6.39337 -3.98465 1.46839 2.35641 2.39035 2.57029 2.81676 3.15516 3.16568 3.21852 3.91575 4.01558 4.47516 4.69766 4.71666 4.76701 5.15711 5.23625 5.30401 5.36182 5.42625 5.49982 5.64655 5.69062 5.70569 5.90016 5.97968 6.00736 6.28452 6.36260 6.37237 6.61673 6.65826 6.98499 7.03213 7.17359 7.39610 7.49924 7.66327 7.98691 8.06876 8.17577 9.07019 9.79358 10.79087 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017465 B = 0.004341 C = 0.003698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.810336 B = 6449.202343 C = 7569.167669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C -0.157 4.157 3 C -0.216 4.216 4 C -0.034 4.034 5 O -0.170 6.170 6 C -0.032 4.032 7 C 0.215 3.785 8 N -0.751 5.751 9 C 0.249 3.751 10 C -0.280 4.280 11 C -0.039 4.039 12 C -0.235 4.235 13 C 0.190 3.810 14 O -0.178 6.178 15 C -0.388 4.388 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.939 3.061 20 H -0.268 1.268 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.299 4.299 24 H 0.068 0.932 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.148 0.852 28 H 0.203 0.797 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.397 0.603 32 H 0.104 0.896 33 H 0.111 0.889 34 H 0.113 0.887 35 H 0.268 0.732 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.221 14.232 13.948 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.159 4.159 3 C -0.235 4.235 4 C -0.102 4.102 5 O -0.066 6.066 6 C -0.082 4.082 7 C 0.091 3.909 8 N -0.385 5.385 9 C 0.148 3.852 10 C -0.303 4.303 11 C -0.058 4.058 12 C -0.255 4.255 13 C 0.135 3.865 14 O -0.081 6.081 15 C -0.465 4.465 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.500 5.500 19 Si 0.764 3.236 20 H -0.192 1.192 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.323 4.323 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.166 0.834 28 H 0.219 0.781 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.232 0.768 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.078 0.922 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.360 13.679 13.839 19.747 hybrid contribution 0.243 1.308 -0.967 1.645 sum 3.603 14.987 12.872 20.082 Atomic orbital electron populations 1.20247 0.88971 1.03138 1.02154 1.20338 0.97324 0.91933 1.06343 1.21748 0.92650 0.99868 1.09237 1.24041 0.99764 0.80769 1.05666 1.84051 1.28861 1.22617 1.71059 1.22251 0.80956 0.96427 1.08530 1.19442 1.00324 0.85138 0.85976 1.44521 1.77156 1.11460 1.05346 1.17425 0.91425 0.83108 0.93203 1.20068 1.18413 0.95525 0.96306 1.20373 0.95772 0.94509 0.95173 1.20055 1.14302 1.00363 0.90811 1.19061 0.90341 0.91047 0.86034 1.83990 1.77273 1.36805 1.10067 1.21351 1.47202 0.93198 0.84747 0.89134 1.25265 0.96544 0.97307 0.97423 1.70049 1.43003 1.17513 1.19389 0.85675 0.78260 0.79523 0.80113 1.19237 1.20197 1.20188 1.20499 1.18707 0.98383 0.94728 0.91362 0.91474 0.90970 0.83450 0.78077 0.91050 0.89640 0.76846 0.87818 0.87111 0.86860 0.92173 0.85779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.86 9.99 36.01 0.36 -0.50 16 2 C -0.16 -1.79 6.16 -104.74 -0.65 -2.43 16 3 C -0.22 -2.16 10.87 -39.70 -0.43 -2.59 16 4 C -0.03 -0.33 12.09 29.42 0.36 0.03 16 5 O -0.17 -2.13 10.65 5.72 0.06 -2.07 16 6 C -0.03 -0.39 6.69 -35.62 -0.24 -0.63 16 7 C 0.22 2.73 5.06 -5.20 -0.03 2.70 16 8 N -0.75 -11.63 5.72 -59.83 -0.34 -11.97 16 9 C 0.25 4.69 6.65 -83.81 -0.56 4.13 16 10 C -0.28 -4.95 9.31 -39.33 -0.37 -5.32 16 11 C -0.04 -0.72 10.03 -39.64 -0.40 -1.12 16 12 C -0.23 -5.12 9.99 -39.36 -0.39 -5.51 16 13 C 0.19 4.71 6.64 -39.14 -0.26 4.45 16 14 O -0.18 -5.20 9.76 0.02 0.00 -5.20 16 15 C -0.39 -11.07 9.49 30.88 0.29 -10.77 16 16 H 0.09 2.41 5.20 -52.49 -0.27 2.14 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.70 13.67 55.48 0.76 -24.95 16 19 Si 0.94 20.89 29.55 -169.99 -5.02 15.87 16 20 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 21 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 23 C -0.30 -6.69 9.01 -39.20 -0.35 -7.04 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.77 7.78 -51.93 -0.40 0.37 16 27 H 0.15 1.14 8.06 -52.49 -0.42 0.72 16 28 H 0.20 1.14 8.06 -52.49 -0.42 0.72 16 29 H 0.07 0.89 7.94 -51.93 -0.41 0.48 16 30 H 0.09 0.99 7.58 -51.93 -0.39 0.59 16 31 H 0.40 6.07 8.48 -40.82 -0.35 5.72 16 32 H 0.10 1.54 6.73 -52.49 -0.35 1.19 16 33 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 34 H 0.11 2.40 8.06 -52.49 -0.42 1.97 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.12 2.81 5.64 -52.48 -0.30 2.52 16 LS Contribution 314.31 15.07 4.74 4.74 Total: -1.00 -32.12 314.31 -6.72 -38.83 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -4.15 Total: 8.38 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: -2.76 Total: -23.63 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.42 Total: -36.91 kcal Atomic # 8 Polarization: -7.33 SS G_CDS: 0.06 Total: -7.27 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -32.12 -6.72 -38.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166378734.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.227 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds