Wall clock time and date at job start Mon Mar 30 2020 00:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86792 * 120.00534 * 2 1 4 4 H 1.48501 * 109.47365 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47022 * 299.99955 * 3 2 1 6 6 H 1.48504 * 109.47183 * 59.99527 * 3 2 1 7 7 C 1.38805 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99570 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00148 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47299 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00134 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00268 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00290 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47347 * 185.05769 * 14 13 11 16 16 C 1.52996 * 110.01486 * 60.39990 * 15 14 13 17 17 O 1.42902 * 109.47238 * 57.81171 * 16 15 14 18 18 C 1.54262 * 110.07535 * 181.81990 * 15 14 13 19 19 C 1.54886 * 104.19718 * 142.91426 * 18 15 14 20 20 C 1.54885 * 102.74813 * 322.05687 * 19 18 15 21 21 C 1.53875 * 110.03068 * 299.01172 * 15 14 13 22 22 H 0.97004 * 119.99592 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47377 * 59.99509 * 10 9 7 24 24 H 1.09008 * 109.46816 * 300.00301 * 10 9 7 25 25 H 0.97000 * 119.99810 * 0.02562 * 13 11 10 26 26 H 1.09003 * 109.47352 * 65.05588 * 14 13 11 27 27 H 1.09001 * 109.47537 * 305.05587 * 14 13 11 28 28 H 1.09003 * 109.47166 * 177.80981 * 16 15 14 29 29 H 1.09002 * 109.47157 * 297.80884 * 16 15 14 30 30 H 0.96705 * 114.00010 * 179.97438 * 17 16 15 31 31 H 1.08997 * 110.48657 * 24.23403 * 18 15 14 32 32 H 1.09004 * 110.48647 * 261.59404 * 18 15 14 33 33 H 1.08996 * 110.75614 * 203.73786 * 19 18 15 34 34 H 1.09002 * 110.75427 * 80.37071 * 19 18 15 35 35 H 1.09010 * 110.48357 * 156.61688 * 20 19 18 36 36 H 1.09000 * 110.48844 * 279.12930 * 20 19 18 37 37 H 1.08991 * 110.03566 * 121.37967 * 21 15 14 38 38 H 1.09006 * 110.03290 * 359.94369 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5155 -3.8916 0.0021 11 6 1.9870 -5.3028 0.0017 12 8 0.7907 -5.5023 0.0009 13 7 2.8436 -6.3433 0.0022 14 6 2.3298 -7.7152 0.0024 15 6 3.4965 -8.6968 0.1301 16 6 4.2478 -8.4496 1.4398 17 8 3.3449 -8.5826 2.5394 18 6 2.9749 -10.1479 0.0859 19 6 4.0603 -10.9178 -0.7065 20 6 4.4791 -9.8965 -1.7931 21 6 4.4530 -8.5369 -1.0646 22 1 -0.4850 0.8401 -0.0004 23 1 3.1235 -3.7312 0.8925 24 1 3.1249 -3.7319 -0.8875 25 1 3.8004 -6.1838 0.0032 26 1 1.7968 -7.9037 -0.9295 27 1 1.6494 -7.8483 0.8434 28 1 5.0524 -9.1781 1.5402 29 1 4.6673 -7.4435 1.4337 30 1 3.7540 -8.4391 3.4038 31 1 2.0182 -10.1937 -0.4344 32 1 2.8813 -10.5505 1.0945 33 1 3.6425 -11.8160 -1.1611 34 1 4.9049 -11.1659 -0.0636 35 1 5.4835 -10.1157 -2.1557 36 1 3.7667 -9.9034 -2.6180 37 1 5.4524 -8.2833 -0.7114 38 1 4.0855 -7.7607 -1.7359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168795290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:59 Heat of formation + Delta-G solvation = -108.647284 kcal Electronic energy + Delta-G solvation = -18941.382827 eV Core-core repulsion = 15909.120094 eV Total energy + Delta-G solvation = -3032.262733 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.06622 -38.49322 -36.25104 -34.22982 -32.40916 -30.87980 -29.06752 -28.90341 -25.97347 -25.41718 -24.01516 -21.17265 -20.04055 -19.06937 -17.82781 -17.45872 -16.55509 -16.03901 -15.65079 -15.32641 -14.88365 -14.78920 -14.43299 -13.96215 -13.72593 -13.43043 -13.08094 -12.96718 -12.57006 -12.10041 -11.77717 -11.42717 -11.39336 -11.25739 -11.08062 -11.04608 -10.99703 -10.81981 -10.73795 -10.61691 -10.14245 -9.77842 -9.31151 -9.05812 -8.74814 -8.19576 -6.47019 -6.19810 -3.89847 3.09098 3.19496 3.22685 3.29708 3.34996 3.73452 3.99473 4.22251 4.26518 4.31365 4.60095 4.90290 4.96432 5.00540 5.15245 5.17380 5.19233 5.22788 5.31692 5.41322 5.54334 5.63103 5.66243 5.67367 5.81810 5.85729 5.88951 5.94611 6.05325 6.08584 6.16879 6.19467 6.72701 7.43178 7.61584 7.79768 8.37263 8.71096 9.25476 10.87683 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036854 B = 0.003409 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.571953 B = 8211.804202 C = 8272.347644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.736 5.736 14 C 0.138 3.862 15 C -0.072 4.072 16 C 0.089 3.911 17 O -0.565 6.565 18 C -0.109 4.109 19 C -0.125 4.125 20 C -0.123 4.123 21 C -0.121 4.121 22 H 0.268 0.732 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.394 0.606 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.046 0.954 29 H 0.045 0.955 30 H 0.378 0.622 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.881 -20.431 0.380 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.391 5.391 14 C 0.014 3.986 15 C -0.072 4.072 16 C 0.011 3.989 17 O -0.371 6.371 18 C -0.147 4.147 19 C -0.163 4.163 20 C -0.161 4.161 21 C -0.159 4.159 22 H 0.077 0.923 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.227 0.773 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.225 0.775 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.278 -20.780 -0.110 23.183 hybrid contribution 2.922 1.532 0.453 3.330 sum 13.199 -19.247 0.343 23.341 Atomic orbital electron populations 1.70037 1.05945 1.27299 1.46984 1.24999 0.95031 0.99030 0.94592 0.86113 0.79557 0.81899 0.77881 1.19646 1.20578 1.20587 1.22917 0.94930 0.91714 1.58757 0.90928 1.85415 1.05011 0.96262 1.96684 1.23523 1.06474 0.95611 1.04732 1.20262 0.86564 0.86219 0.75289 1.90700 1.15381 1.85611 1.47523 1.46003 1.09602 1.05670 1.77789 1.21288 0.95149 0.79968 1.02216 1.21493 0.95666 0.96347 0.93711 1.22205 0.91119 0.99183 0.86396 1.86504 1.39153 1.94502 1.16893 1.22350 0.98579 0.92631 1.01130 1.22516 0.98526 0.97931 0.97311 1.22345 1.01373 0.94363 0.98009 1.22287 0.98934 0.98513 0.96162 0.92261 0.89404 0.89375 0.77254 0.92013 0.90532 0.93611 0.93672 0.77485 0.91061 0.90560 0.91474 0.91691 0.91669 0.91382 0.91463 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.42 13.22 55.49 0.73 -25.68 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.53 -15.42 9.50 30.94 0.29 -15.13 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.16 6.16 36.00 0.22 -2.94 16 11 C 0.53 10.35 7.85 -10.99 -0.09 10.27 16 12 O -0.52 -12.34 15.86 5.55 0.09 -12.25 16 13 N -0.74 -10.42 4.81 -60.30 -0.29 -10.71 16 14 C 0.14 1.80 4.11 -4.04 -0.02 1.78 16 15 C -0.07 -0.67 0.48 -153.39 -0.07 -0.74 16 16 C 0.09 0.76 5.44 37.16 0.20 0.97 16 17 O -0.57 -5.61 12.28 -35.23 -0.43 -6.05 16 18 C -0.11 -0.95 5.82 -25.08 -0.15 -1.10 16 19 C -0.13 -0.88 6.91 -24.74 -0.17 -1.05 16 20 C -0.12 -0.88 6.83 -25.07 -0.17 -1.06 16 21 C -0.12 -0.97 5.49 -25.61 -0.14 -1.11 16 22 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 23 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 24 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 25 H 0.39 4.43 7.08 -40.82 -0.29 4.14 16 26 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 27 H 0.08 1.19 7.64 -51.93 -0.40 0.79 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.05 0.37 7.10 -51.93 -0.37 0.01 16 30 H 0.38 2.24 9.12 45.56 0.42 2.66 16 31 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 32 H 0.08 0.70 7.38 -51.93 -0.38 0.32 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.41 8.14 -51.92 -0.42 -0.02 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 38 H 0.08 0.69 7.39 -51.93 -0.38 0.30 16 LS Contribution 324.17 15.07 4.89 4.89 Total: -1.00 -35.37 324.17 -7.57 -42.94 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -5.14 Total: 2.34 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: -0.18 Total: -8.12 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.44 Total: -36.39 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.34 Total: -18.30 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -35.37 -7.57 -42.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168795290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.707 kcal (2) G-P(sol) polarization free energy of solvation -35.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds