Wall clock time and date at job start Mon Mar 30 2020 00:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86792 * 120.00534 * 2 1 4 4 H 1.48501 * 109.47365 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47022 * 299.99955 * 3 2 1 6 6 H 1.48504 * 109.47183 * 59.99527 * 3 2 1 7 7 C 1.38805 * 119.99540 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99570 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.80996 * 100.00148 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47299 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00134 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00268 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00290 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.47347 * 185.05769 * 14 13 11 16 16 C 1.52996 * 110.01486 * 60.39990 * 15 14 13 17 17 O 1.42902 * 109.47238 * 57.81171 * 16 15 14 18 18 C 1.54262 * 110.07535 * 181.81990 * 15 14 13 19 19 C 1.54886 * 104.19718 * 142.91426 * 18 15 14 20 20 C 1.54885 * 102.74813 * 322.05687 * 19 18 15 21 21 C 1.53875 * 110.03068 * 299.01172 * 15 14 13 22 22 H 0.97004 * 119.99592 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.47377 * 59.99509 * 10 9 7 24 24 H 1.09008 * 109.46816 * 300.00301 * 10 9 7 25 25 H 0.97000 * 119.99810 * 0.02562 * 13 11 10 26 26 H 1.09003 * 109.47352 * 65.05588 * 14 13 11 27 27 H 1.09001 * 109.47537 * 305.05587 * 14 13 11 28 28 H 1.09003 * 109.47166 * 177.80981 * 16 15 14 29 29 H 1.09002 * 109.47157 * 297.80884 * 16 15 14 30 30 H 0.96705 * 114.00010 * 179.97438 * 17 16 15 31 31 H 1.08997 * 110.48657 * 24.23403 * 18 15 14 32 32 H 1.09004 * 110.48647 * 261.59404 * 18 15 14 33 33 H 1.08996 * 110.75614 * 203.73786 * 19 18 15 34 34 H 1.09002 * 110.75427 * 80.37071 * 19 18 15 35 35 H 1.09010 * 110.48357 * 156.61688 * 20 19 18 36 36 H 1.09000 * 110.48844 * 279.12930 * 20 19 18 37 37 H 1.08991 * 110.03566 * 121.37967 * 21 15 14 38 38 H 1.09006 * 110.03290 * 359.94369 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.7104 1.3462 0.0006 5 1 1.8917 2.3963 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 16 1.1291 -2.7280 0.0005 10 6 2.5155 -3.8916 0.0021 11 6 1.9870 -5.3028 0.0017 12 8 0.7907 -5.5023 0.0009 13 7 2.8436 -6.3433 0.0022 14 6 2.3298 -7.7152 0.0024 15 6 3.4965 -8.6968 0.1301 16 6 4.2478 -8.4496 1.4398 17 8 3.3449 -8.5826 2.5394 18 6 2.9749 -10.1479 0.0859 19 6 4.0603 -10.9178 -0.7065 20 6 4.4791 -9.8965 -1.7931 21 6 4.4530 -8.5369 -1.0646 22 1 -0.4850 0.8401 -0.0004 23 1 3.1235 -3.7312 0.8925 24 1 3.1249 -3.7319 -0.8875 25 1 3.8004 -6.1838 0.0032 26 1 1.7968 -7.9037 -0.9295 27 1 1.6494 -7.8483 0.8434 28 1 5.0524 -9.1781 1.5402 29 1 4.6673 -7.4435 1.4337 30 1 3.7540 -8.4391 3.4038 31 1 2.0182 -10.1937 -0.4344 32 1 2.8813 -10.5505 1.0945 33 1 3.6425 -11.8160 -1.1611 34 1 4.9049 -11.1659 -0.0636 35 1 5.4835 -10.1157 -2.1557 36 1 3.7667 -9.9034 -2.6180 37 1 5.4524 -8.2833 -0.7114 38 1 4.0855 -7.7607 -1.7359 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168795290.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:58 Heat of formation + Delta-G solvation = -135.390281 kcal Electronic energy + Delta-G solvation = -18942.542490 eV Core-core repulsion = 15909.120094 eV Total energy + Delta-G solvation = -3033.422396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11204 -39.76488 -36.93837 -35.52819 -34.58549 -32.03142 -30.30458 -29.63270 -27.71951 -26.81337 -24.85173 -22.12801 -21.19525 -20.10684 -19.59035 -18.15539 -17.93933 -17.28229 -16.88496 -16.77862 -16.40212 -15.96138 -15.77837 -15.16743 -14.82998 -14.49253 -14.36693 -14.26033 -13.95087 -13.39726 -13.16282 -12.91197 -12.72847 -12.62717 -12.21619 -11.98749 -11.91325 -11.83308 -11.69985 -11.39484 -11.34896 -11.15953 -10.96467 -10.80526 -10.27412 -10.09819 -8.67511 -8.34786 -6.13296 1.26871 1.41856 1.47292 1.58562 1.61500 2.25970 2.29846 2.99412 3.27410 3.33430 3.52345 3.62844 3.94494 3.99777 4.20556 4.27992 4.32499 4.36647 4.47686 4.48549 4.56337 4.63834 4.77876 4.78563 4.90235 4.97658 5.07350 5.11238 5.25148 5.32147 5.40194 5.41914 5.46991 5.50264 6.19966 6.49018 6.93209 7.06345 7.24299 8.74818 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.036854 B = 0.003409 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.571953 B = 8211.804202 C = 8272.347644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.001 2.999 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.127 4.127 11 C 0.531 3.469 12 O -0.569 6.569 13 N -0.707 5.707 14 C 0.140 3.860 15 C -0.067 4.067 16 C 0.087 3.913 17 O -0.590 6.590 18 C -0.111 4.111 19 C -0.118 4.118 20 C -0.122 4.122 21 C -0.120 4.120 22 H 0.271 0.729 23 H 0.109 0.891 24 H 0.111 0.889 25 H 0.413 0.587 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.394 0.606 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.226 -20.827 0.326 26.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.823 3.177 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.279 4.279 11 C 0.317 3.683 12 O -0.448 6.448 13 N -0.361 5.361 14 C 0.016 3.984 15 C -0.067 4.067 16 C 0.009 3.991 17 O -0.398 6.398 18 C -0.149 4.149 19 C -0.156 4.156 20 C -0.160 4.160 21 C -0.157 4.157 22 H 0.080 0.920 23 H 0.127 0.873 24 H 0.129 0.871 25 H 0.250 0.750 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.069 0.931 30 H 0.244 0.756 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.686 -21.213 -0.156 25.245 hybrid contribution 1.893 1.518 0.487 2.475 sum 15.579 -19.695 0.331 25.114 Atomic orbital electron populations 1.70201 1.08035 1.28557 1.48049 1.26163 0.95985 1.03405 0.93715 0.84871 0.78612 0.76168 0.78063 1.17916 1.19921 1.19949 1.23242 0.95370 0.91903 1.58820 0.89819 1.85632 1.10666 0.99331 1.97045 1.23355 1.03513 0.94217 1.06772 1.20119 0.86243 0.86768 0.75153 1.90689 1.17592 1.86168 1.50305 1.45720 1.09987 1.05066 1.75289 1.21334 0.96608 0.79882 1.00543 1.21505 0.94555 0.95322 0.95326 1.22300 0.91176 1.00231 0.85398 1.86472 1.40472 1.94653 1.18221 1.22346 0.98874 0.92571 1.01076 1.22493 0.98133 0.97836 0.97109 1.22351 1.02144 0.93767 0.97729 1.22291 0.99374 0.98813 0.95250 0.91995 0.87256 0.87104 0.75025 0.92999 0.93220 0.91219 0.93147 0.75649 0.92247 0.91075 0.90832 0.90438 0.90065 0.92081 0.89390 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.59 13.22 21.65 0.29 -56.30 16 2 C 0.01 0.68 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.77 29.55 68.60 2.03 45.79 16 4 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 5 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -31.44 9.50 67.96 0.65 -30.80 16 8 H 0.08 4.46 7.80 -2.91 -0.02 4.44 16 9 S -0.15 -8.73 20.57 -56.49 -1.16 -9.89 16 10 C -0.13 -5.17 6.16 71.23 0.44 -4.73 16 11 C 0.53 20.68 7.85 87.65 0.69 21.37 16 12 O -0.57 -28.03 15.86 -3.04 -0.05 -28.08 16 13 N -0.71 -19.22 4.81 -463.06 -2.23 -21.44 16 14 C 0.14 3.64 4.11 86.38 0.35 3.99 16 15 C -0.07 -1.14 0.48 -51.46 -0.02 -1.16 16 16 C 0.09 1.27 5.44 71.98 0.39 1.66 16 17 O -0.59 -10.91 12.28 -148.98 -1.83 -12.74 16 18 C -0.11 -1.81 5.82 31.67 0.18 -1.62 16 19 C -0.12 -1.37 6.91 31.88 0.22 -1.15 16 20 C -0.12 -1.43 6.83 31.67 0.22 -1.22 16 21 C -0.12 -1.60 5.49 31.32 0.17 -1.43 16 22 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 23 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 24 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 25 H 0.41 8.22 7.08 -92.71 -0.66 7.56 16 26 H 0.05 1.46 8.13 -2.39 -0.02 1.44 16 27 H 0.05 1.59 7.64 -2.39 -0.02 1.57 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.05 0.68 7.10 -2.39 -0.02 0.66 16 30 H 0.39 4.05 9.12 -74.05 -0.68 3.37 16 31 H 0.06 1.09 7.85 -2.39 -0.02 1.07 16 32 H 0.07 1.24 7.38 -2.39 -0.02 1.22 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.84 7.67 -2.39 -0.02 0.83 16 38 H 0.06 1.03 7.39 -2.38 -0.02 1.01 16 Total: -1.00 -79.05 324.17 0.53 -78.52 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -0.27 Total: 18.06 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 3.75 Total: -13.93 kcal Atomic # 7 Polarization: -75.80 SS G_CDS: -1.94 Total: -77.74 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.88 Total: -40.82 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.89 kcal Total: -79.05 0.53 -78.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168795290.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.870 kcal (2) G-P(sol) polarization free energy of solvation -79.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds