Wall clock time and date at job start Mon Mar 30 2020 01:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86792 * 120.00235 * 2 1 4 4 H 1.48504 * 109.47175 * 269.99942 * 3 2 1 5 5 H 1.48500 * 109.47187 * 29.99836 * 3 2 1 6 6 H 1.48501 * 109.47466 * 149.99756 * 3 2 1 7 7 C 1.38801 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00509 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99736 * 180.02562 * 7 2 1 10 10 C 1.81004 * 100.00069 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47159 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99765 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00006 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99761 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46845 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47216 * 180.02562 * 15 14 13 17 17 H 1.08998 * 109.48768 * 305.03084 * 16 15 14 18 18 C 1.53091 * 109.48142 * 185.00050 * 16 15 14 19 19 C 1.53176 * 109.21206 * 182.43908 * 18 16 15 20 20 C 1.53174 * 109.03724 * 56.94941 * 19 18 16 21 21 C 1.53084 * 109.16456 * 303.01556 * 20 19 18 22 22 O 1.42906 * 109.41372 * 57.61236 * 21 20 19 23 23 H 0.96999 * 119.99603 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46859 * 59.99551 * 10 9 7 25 25 H 1.09005 * 109.46554 * 299.99960 * 10 9 7 26 26 H 0.96998 * 119.99928 * 0.02562 * 13 11 10 27 27 H 1.09001 * 109.47530 * 60.00427 * 14 13 11 28 28 H 1.09005 * 109.47222 * 300.00031 * 14 13 11 29 29 H 1.09002 * 109.47307 * 60.00117 * 15 14 13 30 30 H 1.09005 * 109.47089 * 299.99933 * 15 14 13 31 31 H 1.09002 * 109.52401 * 62.50061 * 18 16 15 32 32 H 1.09004 * 109.52068 * 302.37706 * 18 16 15 33 33 H 1.09004 * 109.53956 * 176.81728 * 19 18 16 34 34 H 1.08995 * 109.54545 * 297.07504 * 19 18 16 35 35 H 1.09007 * 109.52410 * 62.92341 * 20 19 18 36 36 H 1.09000 * 109.52423 * 183.04692 * 20 19 18 37 37 H 1.09004 * 109.48326 * 177.59400 * 21 20 19 38 38 H 1.09000 * 109.48607 * 297.61643 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2022 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5729 -3.2327 0.0039 12 8 6.3439 -2.2965 0.0035 13 7 6.0455 -4.4949 0.0056 14 6 7.4905 -4.7360 0.0063 15 6 7.7562 -6.2428 0.0076 16 6 9.2653 -6.4946 0.0090 17 1 9.7218 -5.9733 -0.8323 18 6 9.5324 -7.9969 -0.1155 19 6 11.0422 -8.2474 -0.0522 20 6 11.5907 -7.6659 1.2544 21 6 11.2456 -6.1762 1.3254 22 8 9.8293 -6.0116 1.2301 23 1 -0.4849 0.8401 -0.0004 24 1 3.6438 -3.4323 -0.8873 25 1 3.6432 -3.4311 0.8927 26 1 5.4289 -5.2437 0.0055 27 1 7.9332 -4.2880 0.8960 28 1 7.9338 -4.2900 -0.8840 29 1 7.3136 -6.6905 -0.8823 30 1 7.3129 -6.6892 0.8978 31 1 9.1427 -8.3585 -1.0671 32 1 9.0411 -8.5233 0.7029 33 1 11.2354 -9.3198 -0.0835 34 1 11.5280 -7.7632 -0.8992 35 1 11.1412 -8.1847 2.1012 36 1 12.6731 -7.7918 1.2831 37 1 11.5963 -5.7665 2.2727 38 1 11.7290 -5.6513 0.5013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182807016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:35 Heat of formation + Delta-G solvation = -108.063248 kcal Electronic energy + Delta-G solvation = -18272.903992 eV Core-core repulsion = 15240.666584 eV Total energy + Delta-G solvation = -3032.237407 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.88529 -39.07938 -35.37474 -33.98689 -32.83107 -32.41178 -30.12477 -28.34053 -25.61947 -25.17262 -23.73436 -21.75224 -20.72587 -20.27549 -17.82458 -16.85037 -16.55929 -16.21819 -15.75588 -15.32703 -14.97498 -14.91745 -14.83634 -14.04655 -13.91284 -13.76745 -13.25538 -13.04337 -12.77235 -12.55489 -12.19392 -12.03172 -11.58808 -11.51071 -11.29219 -11.23723 -11.10785 -10.98282 -10.66403 -10.54694 -9.83497 -9.75912 -9.44890 -8.98530 -8.87968 -8.46527 -6.88584 -6.26577 -3.97866 2.80985 3.04901 3.33097 3.36327 3.45048 3.53436 3.70029 4.31280 4.35854 4.38847 4.44969 4.53190 4.75563 4.77974 4.91394 4.95270 5.01277 5.12391 5.12852 5.27276 5.33007 5.38043 5.39970 5.51955 5.53889 5.61274 5.71134 5.78566 5.84354 5.94050 6.02968 6.05765 6.60535 6.93329 7.68418 7.96639 8.44040 8.56479 9.19767 10.82675 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.057261 B = 0.002776 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.868177 B =10085.732880 C =10414.642311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.124 4.124 11 C 0.529 3.471 12 O -0.520 6.520 13 N -0.738 5.738 14 C 0.124 3.876 15 C -0.123 4.123 16 C 0.094 3.906 17 H 0.061 0.939 18 C -0.150 4.150 19 C -0.123 4.123 20 C -0.157 4.157 21 C 0.060 3.940 22 O -0.375 6.375 23 H 0.270 0.730 24 H 0.096 0.904 25 H 0.097 0.903 26 H 0.398 0.602 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.216 -18.750 0.011 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.083 5.917 10 C -0.274 4.274 11 C 0.315 3.685 12 O -0.395 6.395 13 N -0.392 5.392 14 C 0.000 4.000 15 C -0.161 4.161 16 C 0.036 3.964 17 H 0.079 0.921 18 C -0.188 4.188 19 C -0.161 4.161 20 C -0.195 4.195 21 C -0.016 4.016 22 O -0.294 6.294 23 H 0.080 0.920 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.232 0.768 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.112 0.888 38 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 22.228 -16.990 0.158 27.978 hybrid contribution -0.902 -0.921 -0.238 1.311 sum 21.327 -17.911 -0.080 27.851 Atomic orbital electron populations 1.69944 1.05911 1.27732 1.48190 1.24721 0.94465 0.98988 0.93209 0.86725 0.81922 0.83237 0.79915 1.19232 1.19971 1.15883 1.22328 0.88317 0.97526 1.58643 0.89394 1.84794 1.09201 1.00238 1.97420 1.23280 0.94125 1.04256 1.05772 1.20269 0.90541 0.82358 0.75330 1.90699 1.58810 1.42228 1.47733 1.45968 1.07592 1.07999 1.77655 1.21239 0.81218 0.94817 1.02769 1.21824 0.94287 0.96412 1.03579 1.22013 0.93580 0.93344 0.87508 0.92058 1.22208 0.96746 0.96815 1.03022 1.21588 0.95569 1.01233 0.97684 1.22202 1.01361 0.97330 0.98623 1.22560 0.81836 0.94993 1.02245 1.87981 1.20931 1.82184 1.38353 0.91972 0.88532 0.88471 0.76783 0.90771 0.91897 0.89825 0.90256 0.90751 0.90877 0.91460 0.91790 0.91035 0.90967 0.88802 0.93177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.82 13.97 55.49 0.78 -26.04 16 2 C 0.09 2.80 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 22.06 27.74 -169.99 -4.71 17.34 16 4 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 6 H -0.23 -6.05 6.74 56.52 0.38 -5.67 16 7 C -0.52 -15.18 10.04 30.94 0.31 -14.87 16 8 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 9 S -0.14 -3.69 18.55 -107.50 -1.99 -5.69 16 10 C -0.12 -2.44 6.16 36.00 0.22 -2.22 16 11 C 0.53 9.76 7.85 -10.99 -0.09 9.67 16 12 O -0.52 -11.70 15.86 5.55 0.09 -11.61 16 13 N -0.74 -9.78 5.56 -60.29 -0.33 -10.12 16 14 C 0.12 1.48 5.57 -4.04 -0.02 1.46 16 15 C -0.12 -1.02 5.04 -26.73 -0.13 -1.16 16 16 C 0.09 0.77 2.65 -26.68 -0.07 0.70 16 17 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 18 C -0.15 -0.97 5.42 -26.59 -0.14 -1.11 16 19 C -0.12 -0.72 6.03 -26.55 -0.16 -0.88 16 20 C -0.16 -0.96 6.14 -26.60 -0.16 -1.12 16 21 C 0.06 0.46 6.84 37.20 0.25 0.71 16 22 O -0.38 -3.80 9.95 -35.23 -0.35 -4.15 16 23 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.10 1.76 8.14 -51.92 -0.42 1.33 16 25 H 0.10 1.78 8.14 -51.91 -0.42 1.36 16 26 H 0.40 4.00 8.47 -40.82 -0.35 3.66 16 27 H 0.07 1.04 7.83 -51.93 -0.41 0.64 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 326.42 15.07 4.92 4.92 Total: -1.00 -34.61 326.42 -7.95 -42.56 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.25 Total: -1.10 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -0.09 Total: -6.11 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.44 Total: -36.16 kcal Atomic # 8 Polarization: -15.50 SS G_CDS: -0.26 Total: -15.76 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.71 Total: 17.34 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -34.61 -7.95 -42.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182807016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.501 kcal (2) G-P(sol) polarization free energy of solvation -34.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds