Wall clock time and date at job start Mon Mar 30 2020 01:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86792 * 120.00235 * 2 1 4 4 H 1.48504 * 109.47175 * 269.99942 * 3 2 1 5 5 H 1.48500 * 109.47187 * 29.99836 * 3 2 1 6 6 H 1.48501 * 109.47466 * 149.99756 * 3 2 1 7 7 C 1.38801 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00509 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99736 * 180.02562 * 7 2 1 10 10 C 1.81004 * 100.00069 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47159 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99765 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00006 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99761 * 179.97438 * 13 11 10 15 15 C 1.53003 * 109.46845 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.47216 * 180.02562 * 15 14 13 17 17 H 1.08998 * 109.48768 * 305.03084 * 16 15 14 18 18 C 1.53091 * 109.48142 * 185.00050 * 16 15 14 19 19 C 1.53176 * 109.21206 * 182.43908 * 18 16 15 20 20 C 1.53174 * 109.03724 * 56.94941 * 19 18 16 21 21 C 1.53084 * 109.16456 * 303.01556 * 20 19 18 22 22 O 1.42906 * 109.41372 * 57.61236 * 21 20 19 23 23 H 0.96999 * 119.99603 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46859 * 59.99551 * 10 9 7 25 25 H 1.09005 * 109.46554 * 299.99960 * 10 9 7 26 26 H 0.96998 * 119.99928 * 0.02562 * 13 11 10 27 27 H 1.09001 * 109.47530 * 60.00427 * 14 13 11 28 28 H 1.09005 * 109.47222 * 300.00031 * 14 13 11 29 29 H 1.09002 * 109.47307 * 60.00117 * 15 14 13 30 30 H 1.09005 * 109.47089 * 299.99933 * 15 14 13 31 31 H 1.09002 * 109.52401 * 62.50061 * 18 16 15 32 32 H 1.09004 * 109.52068 * 302.37706 * 18 16 15 33 33 H 1.09004 * 109.53956 * 176.81728 * 19 18 16 34 34 H 1.08995 * 109.54545 * 297.07504 * 19 18 16 35 35 H 1.09007 * 109.52410 * 62.92341 * 20 19 18 36 36 H 1.09000 * 109.52423 * 183.04692 * 20 19 18 37 37 H 1.09004 * 109.48326 * 177.59400 * 21 20 19 38 38 H 1.09000 * 109.48607 * 297.61643 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4401 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2022 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5729 -3.2327 0.0039 12 8 6.3439 -2.2965 0.0035 13 7 6.0455 -4.4949 0.0056 14 6 7.4905 -4.7360 0.0063 15 6 7.7562 -6.2428 0.0076 16 6 9.2653 -6.4946 0.0090 17 1 9.7218 -5.9733 -0.8323 18 6 9.5324 -7.9969 -0.1155 19 6 11.0422 -8.2474 -0.0522 20 6 11.5907 -7.6659 1.2544 21 6 11.2456 -6.1762 1.3254 22 8 9.8293 -6.0116 1.2301 23 1 -0.4849 0.8401 -0.0004 24 1 3.6438 -3.4323 -0.8873 25 1 3.6432 -3.4311 0.8927 26 1 5.4289 -5.2437 0.0055 27 1 7.9332 -4.2880 0.8960 28 1 7.9338 -4.2900 -0.8840 29 1 7.3136 -6.6905 -0.8823 30 1 7.3129 -6.6892 0.8978 31 1 9.1427 -8.3585 -1.0671 32 1 9.0411 -8.5233 0.7029 33 1 11.2354 -9.3198 -0.0835 34 1 11.5280 -7.7632 -0.8992 35 1 11.1412 -8.1847 2.1012 36 1 12.6731 -7.7918 1.2831 37 1 11.5963 -5.7665 2.2727 38 1 11.7290 -5.6513 0.5013 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182807016.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:34 Heat of formation + Delta-G solvation = -132.516513 kcal Electronic energy + Delta-G solvation = -18273.964365 eV Core-core repulsion = 15240.666584 eV Total energy + Delta-G solvation = -3033.297781 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.76850 -40.23670 -36.48245 -34.67065 -34.53220 -33.75335 -31.36933 -29.35101 -27.84997 -25.89957 -24.41204 -22.52498 -21.81228 -21.09459 -19.87530 -17.88227 -17.52469 -17.35361 -17.05604 -16.73346 -16.61528 -15.71549 -15.57973 -15.32566 -15.05072 -14.92161 -14.73773 -14.45014 -13.66099 -13.57756 -13.34756 -13.16278 -13.01463 -12.81492 -12.59820 -12.41382 -12.08406 -11.90134 -11.86793 -11.61903 -11.23760 -11.16869 -10.97070 -10.53194 -10.35082 -10.12187 -8.99676 -8.51419 -6.22193 0.99340 1.31498 1.47404 1.56323 1.56979 2.22701 2.27182 2.72258 2.85846 2.86741 3.67524 3.80828 3.93275 3.96841 4.02468 4.12221 4.24467 4.29351 4.33346 4.37752 4.47575 4.54189 4.68494 4.75478 4.87816 4.94428 5.01077 5.09668 5.11111 5.16942 5.23948 5.41283 5.42372 5.71136 6.11692 6.33380 6.49002 6.93855 7.20769 8.60942 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.057261 B = 0.002776 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.868177 B =10085.732880 C =10414.642311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.528 4.528 8 H 0.063 0.937 9 S -0.179 6.179 10 C -0.110 4.110 11 C 0.532 3.468 12 O -0.566 6.566 13 N -0.711 5.711 14 C 0.125 3.875 15 C -0.112 4.112 16 C 0.089 3.911 17 H 0.061 0.939 18 C -0.146 4.146 19 C -0.124 4.124 20 C -0.154 4.154 21 C 0.053 3.947 22 O -0.403 6.403 23 H 0.277 0.723 24 H 0.116 0.884 25 H 0.114 0.886 26 H 0.418 0.582 27 H 0.051 0.949 28 H 0.057 0.943 29 H 0.109 0.891 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.478 -20.246 -0.389 30.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.162 1.162 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.047 5.953 10 C -0.261 4.261 11 C 0.317 3.683 12 O -0.445 6.445 13 N -0.365 5.365 14 C 0.001 3.999 15 C -0.150 4.150 16 C 0.031 3.969 17 H 0.079 0.921 18 C -0.184 4.184 19 C -0.162 4.162 20 C -0.192 4.192 21 C -0.023 4.023 22 O -0.323 6.323 23 H 0.086 0.914 24 H 0.134 0.866 25 H 0.132 0.868 26 H 0.255 0.745 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.127 0.873 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.104 0.896 37 H 0.114 0.886 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 23.482 -18.550 -0.241 29.926 hybrid contribution -1.249 -0.612 -0.107 1.395 sum 22.233 -19.163 -0.348 29.354 Atomic orbital electron populations 1.70017 1.07257 1.29016 1.49177 1.25570 0.95299 1.02271 0.92928 0.85860 0.80645 0.79604 0.80223 1.18657 1.18301 1.16183 1.22458 0.90157 0.96733 1.58188 0.91842 1.84748 1.06531 1.06404 1.97594 1.23270 0.95715 0.99505 1.07595 1.20025 0.89493 0.83447 0.75303 1.90689 1.59456 1.43970 1.50373 1.45746 1.08795 1.06817 1.75172 1.21311 0.79671 0.97461 1.01414 1.21799 0.94815 0.93380 1.05007 1.22126 0.93214 0.94655 0.86921 0.92115 1.22175 0.97290 0.95197 1.03698 1.21621 0.95136 1.01929 0.97505 1.22174 1.02236 0.96054 0.98703 1.22712 0.80829 0.96264 1.02540 1.87940 1.22272 1.82766 1.39327 0.91359 0.86567 0.86765 0.74479 0.93013 0.92486 0.87317 0.89818 0.89255 0.91147 0.90358 0.91469 0.91567 0.89593 0.88605 0.92908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.16 13.97 21.65 0.30 -55.85 16 2 C 0.04 2.65 5.50 84.86 0.47 3.11 16 3 Si 0.91 45.53 27.74 68.60 1.90 47.43 16 4 H -0.26 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.26 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 7 C -0.53 -30.99 10.04 67.95 0.68 -30.31 16 8 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 9 S -0.18 -9.22 18.55 -56.49 -1.05 -10.27 16 10 C -0.11 -4.19 6.16 71.24 0.44 -3.75 16 11 C 0.53 18.91 7.85 87.66 0.69 19.60 16 12 O -0.57 -25.31 15.86 -3.05 -0.05 -25.36 16 13 N -0.71 -17.33 5.56 -463.05 -2.57 -19.91 16 14 C 0.13 2.81 5.57 86.38 0.48 3.30 16 15 C -0.11 -1.59 5.04 30.60 0.15 -1.44 16 16 C 0.09 1.30 2.65 30.63 0.08 1.38 16 17 H 0.06 0.88 8.14 -2.39 -0.02 0.87 16 18 C -0.15 -1.53 5.42 30.68 0.17 -1.36 16 19 C -0.12 -1.17 6.03 30.71 0.19 -0.98 16 20 C -0.15 -1.62 6.14 30.68 0.19 -1.44 16 21 C 0.05 0.75 6.84 72.01 0.49 1.25 16 22 O -0.40 -7.84 9.95 -148.98 -1.48 -9.32 16 23 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 24 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 25 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 26 H 0.42 7.06 8.47 -92.71 -0.79 6.27 16 27 H 0.05 1.43 7.83 -2.39 -0.02 1.42 16 28 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -75.10 326.42 1.29 -73.81 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.21 Total: 10.11 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 4.02 Total: -10.65 kcal Atomic # 7 Polarization: -73.49 SS G_CDS: -2.27 Total: -75.76 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.53 Total: -34.68 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.90 Total: 47.43 kcal Atomic # 16 Polarization: -9.22 SS G_CDS: -1.05 Total: -10.27 kcal Total: -75.10 1.29 -73.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182807016.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.706 kcal (2) G-P(sol) polarization free energy of solvation -75.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds