Wall clock time and date at job start Mon Mar 30 2020 01:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37887 * 119.67225 * 2 1 4 4 C 1.38931 * 119.97677 * 180.02562 * 3 2 1 5 5 O 1.34908 * 133.10661 * 180.02562 * 4 3 2 6 6 C 1.33820 * 111.36059 * 179.97438 * 5 4 3 7 7 C 1.36148 * 109.83650 * 359.97438 * 6 5 4 8 8 C 1.46987 * 127.14191 * 180.02562 * 7 6 5 9 9 O 1.21681 * 119.99720 * 233.56487 * 8 7 6 10 10 N 1.34780 * 120.00006 * 53.57126 * 8 7 6 11 11 C 1.46500 * 120.00091 * 5.94484 * 10 8 7 12 12 C 1.36955 * 119.99662 * 185.94853 * 10 8 7 13 13 H 1.08004 * 120.00036 * 5.46636 * 12 10 8 14 14 C 1.38974 * 119.99718 * 185.47725 * 12 10 8 15 15 N 1.31410 * 120.00220 * 5.48380 * 14 12 10 16 16 Si 1.86810 * 120.00115 * 185.48622 * 14 12 10 17 17 H 1.48499 * 109.46899 * 89.99544 * 16 14 12 18 18 H 1.48490 * 109.47152 * 209.99819 * 16 14 12 19 19 H 1.48500 * 109.46591 * 329.99871 * 16 14 12 20 20 C 1.40274 * 119.25256 * 359.97438 * 4 3 2 21 21 C 1.39063 * 120.28375 * 359.72698 * 20 4 3 22 22 C 1.37883 * 119.63245 * 0.52761 * 21 20 4 23 23 C 1.50711 * 119.90079 * 179.76873 * 22 21 20 24 24 H 1.08997 * 109.46654 * 270.01375 * 1 2 3 25 25 H 1.08999 * 109.47249 * 30.01795 * 1 2 3 26 26 H 1.09006 * 109.47073 * 150.02253 * 1 2 3 27 27 H 1.07998 * 120.01240 * 359.97438 * 3 2 1 28 28 H 1.07996 * 125.08261 * 180.02562 * 6 5 4 29 29 H 1.08998 * 109.46826 * 355.06056 * 11 10 8 30 30 H 1.08999 * 109.47119 * 115.06381 * 11 10 8 31 31 H 1.09004 * 109.46661 * 235.05847 * 11 10 8 32 32 H 0.97002 * 120.00202 * 180.02562 * 15 14 12 33 33 H 1.08005 * 120.17831 * 180.29584 * 21 20 4 34 34 H 1.08994 * 109.47079 * 269.72837 * 23 22 21 35 35 H 1.08996 * 109.46978 * 149.72465 * 23 22 21 36 36 H 1.08995 * 109.46618 * 29.72685 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1896 1.1981 0.0000 4 6 3.5789 1.2054 -0.0005 5 8 4.4955 2.1953 -0.0002 6 6 5.7411 1.7061 -0.0005 7 6 5.7030 0.3451 -0.0004 8 6 6.8494 -0.5748 -0.0001 9 8 6.9323 -1.4438 -0.8479 10 7 7.8086 -0.4560 0.9392 11 6 7.6458 0.5024 2.0353 12 6 8.9355 -1.2311 0.8691 13 1 9.0971 -1.8730 0.0156 14 6 9.8709 -1.1918 1.8961 15 7 9.6247 -0.4951 2.9828 16 14 11.4783 -2.1294 1.7319 17 1 12.4998 -1.2541 1.1028 18 1 11.9464 -2.5487 3.0772 19 1 11.2663 -3.3305 0.8849 20 6 4.2708 -0.0148 -0.0005 21 6 3.5722 -1.2171 0.0057 22 6 2.1934 -1.2045 0.0009 23 6 1.4302 -2.5041 0.0024 24 1 -0.3632 0.0002 1.0277 25 1 -0.3634 0.8898 -0.5141 26 1 -0.3633 -0.8902 -0.5135 27 1 1.6445 2.1304 -0.0004 28 1 6.6419 2.3018 0.0001 29 1 6.7382 1.0848 1.8767 30 1 7.5719 -0.0356 2.9804 31 1 8.5062 1.1710 2.0640 32 1 10.2778 -0.4674 3.6995 33 1 4.1067 -2.1556 0.0106 34 1 1.2456 -2.8181 -1.0249 35 1 0.4792 -2.3662 0.5167 36 1 2.0140 -3.2676 0.5164 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184369035.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:11 Heat of formation + Delta-G solvation = 2.969374 kcal Electronic energy + Delta-G solvation = -20574.645742 eV Core-core repulsion = 17411.779119 eV Total energy + Delta-G solvation = -3162.866623 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.15364 -38.46336 -38.21063 -34.72524 -33.04375 -32.07327 -31.73238 -30.53312 -27.07331 -26.47418 -26.06418 -24.75350 -22.36671 -22.09623 -20.69696 -18.89845 -17.22688 -16.77449 -16.61871 -15.92180 -15.38542 -14.99540 -14.31284 -14.18285 -14.03431 -14.00433 -13.79832 -13.55547 -12.84100 -12.58911 -12.31862 -12.25411 -12.07628 -11.71406 -11.55385 -11.31522 -11.25861 -11.02952 -10.91507 -10.66036 -10.39896 -10.28646 -9.53873 -9.11363 -8.57089 -8.16567 -7.92832 -7.72202 -6.31368 -3.86561 1.12699 1.52344 2.45015 3.02737 3.14022 3.21278 3.27267 3.75918 3.95973 4.10010 4.69631 4.76914 4.87785 5.03422 5.09987 5.18352 5.29889 5.41866 5.49006 5.51575 5.66434 5.70099 5.77663 5.87851 5.89015 6.05683 6.14914 6.36233 6.41435 6.53991 6.68130 6.73626 6.89777 7.02056 7.37211 7.42779 7.50148 8.00730 8.42758 9.11861 9.36282 9.92521 10.62216 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.029784 B = 0.004690 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 939.881366 B = 5968.546652 C = 6445.386559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.068 4.068 3 C -0.110 4.110 4 C 0.046 3.954 5 O -0.192 6.192 6 C 0.021 3.979 7 C -0.172 4.172 8 C 0.494 3.506 9 O -0.589 6.589 10 N -0.433 5.433 11 C 0.107 3.893 12 C -0.298 4.298 13 H 0.107 0.893 14 C 0.027 3.973 15 N -0.883 5.883 16 Si 0.934 3.066 17 H -0.276 1.276 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.097 4.097 21 C -0.055 4.055 22 C -0.109 4.109 23 C -0.109 4.109 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.128 0.872 28 H 0.213 0.787 29 H 0.027 0.973 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.267 0.733 33 H 0.130 0.870 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.162 3.828 -1.535 14.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.068 4.068 3 C -0.128 4.128 4 C -0.001 4.001 5 O -0.093 6.093 6 C -0.046 4.046 7 C -0.177 4.177 8 C 0.283 3.717 9 O -0.476 6.476 10 N -0.150 5.150 11 C -0.036 4.036 12 C -0.426 4.426 13 H 0.124 0.876 14 C -0.176 4.176 15 N -0.523 5.523 16 Si 0.761 3.239 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.098 4.098 21 C -0.073 4.073 22 C -0.109 4.109 23 C -0.166 4.166 24 H 0.089 0.911 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.146 0.854 28 H 0.229 0.771 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.056 3.705 -1.725 14.638 hybrid contribution 1.160 -0.307 0.198 1.216 sum -12.896 3.398 -1.527 13.423 Atomic orbital electron populations 1.20778 0.90663 1.02833 1.02339 1.19378 0.95754 0.91397 1.00278 1.19600 0.88190 0.98484 1.06541 1.19508 0.90974 0.85624 1.03957 1.83781 1.14495 1.34868 1.76168 1.24315 0.85224 0.93449 1.01605 1.21306 0.93432 0.93852 1.09080 1.16772 0.82524 0.86782 0.85653 1.90629 1.78532 1.37410 1.40994 1.43658 1.16172 1.33705 1.21458 1.21918 0.98044 0.92565 0.91079 1.19861 0.95107 1.21428 1.06171 0.87558 1.25373 1.00075 0.97457 0.94654 1.70161 1.35406 1.40490 1.06263 0.85788 0.80807 0.79696 0.77645 1.20232 1.20788 1.19270 1.19578 0.91787 0.93907 1.04564 1.20460 0.92690 0.97127 0.96985 1.19576 0.93014 0.94972 1.03320 1.20750 0.99620 0.94008 1.02187 0.91091 0.91566 0.91097 0.85370 0.77063 0.95410 0.90512 0.91723 0.92187 0.85170 0.91334 0.91467 0.91470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.17 36.01 0.33 -0.65 16 2 C -0.07 -0.89 5.88 -104.60 -0.61 -1.50 16 3 C -0.11 -1.56 9.69 -39.45 -0.38 -1.94 16 4 C 0.05 0.81 7.39 -38.56 -0.28 0.52 16 5 O -0.19 -3.31 10.53 5.30 0.06 -3.26 16 6 C 0.02 0.37 9.92 29.98 0.30 0.67 16 7 C -0.17 -3.71 5.03 -103.26 -0.52 -4.23 16 8 C 0.49 12.82 7.52 -12.71 -0.10 12.73 16 9 O -0.59 -17.25 16.71 5.21 0.09 -17.17 16 10 N -0.43 -11.39 3.02 -123.57 -0.37 -11.76 16 11 C 0.11 2.49 8.61 59.85 0.52 3.00 16 12 C -0.30 -8.33 9.55 -14.99 -0.14 -8.47 16 13 H 0.11 3.10 7.20 -52.48 -0.38 2.73 16 14 C 0.03 0.70 5.42 -17.46 -0.09 0.61 16 15 N -0.88 -22.99 9.53 55.50 0.53 -22.46 16 16 Si 0.93 20.57 29.56 -169.99 -5.02 15.55 16 17 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 18 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 19 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 20 C -0.10 -1.92 6.39 -104.98 -0.67 -2.59 16 21 C -0.05 -0.99 9.73 -39.41 -0.38 -1.37 16 22 C -0.11 -1.57 5.88 -104.60 -0.62 -2.19 16 23 C -0.11 -1.20 9.17 36.01 0.33 -0.87 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 26 H 0.07 0.56 6.67 -51.93 -0.35 0.21 16 27 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.21 3.13 8.06 -52.49 -0.42 2.71 16 29 H 0.03 0.56 4.89 -51.93 -0.25 0.30 16 30 H 0.08 1.91 6.87 -51.93 -0.36 1.55 16 31 H 0.06 1.51 7.26 -51.93 -0.38 1.14 16 32 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 33 H 0.13 2.46 8.06 -52.48 -0.42 2.04 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.60 6.68 -51.93 -0.35 0.25 16 36 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 LS Contribution 304.50 15.07 4.59 4.59 Total: -1.00 -31.99 304.50 -6.61 -38.61 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -4.15 Total: 2.20 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -2.33 Total: -6.29 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.16 Total: -34.23 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: 0.14 Total: -20.42 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.99 -6.61 -38.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184369035.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.575 kcal (2) G-P(sol) polarization free energy of solvation -31.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds