Wall clock time and date at job start Mon Mar 30 2020 01:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 C 1.52998 * 109.51486 * 304.90309 * 3 2 1 5 5 C 1.53298 * 109.51253 * 184.74773 * 3 2 1 6 6 N 1.47152 * 108.38312 * 187.77476 * 5 3 2 7 7 C 1.34777 * 120.97922 * 230.51137 * 6 5 3 8 8 O 1.21277 * 120.00290 * 0.02813 * 7 6 5 9 9 C 1.50703 * 119.99825 * 180.02562 * 7 6 5 10 10 S 1.80991 * 109.47287 * 180.02562 * 9 7 6 11 11 C 1.76196 * 100.00293 * 180.02562 * 10 9 7 12 12 H 1.07998 * 119.99714 * 359.97438 * 11 10 9 13 13 C 1.38793 * 120.00253 * 180.02562 * 11 10 9 14 14 N 1.31639 * 120.00248 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00437 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.47005 * 89.99244 * 15 13 11 17 17 H 1.48497 * 109.47229 * 209.99962 * 15 13 11 18 18 H 1.48507 * 109.46579 * 329.99940 * 15 13 11 19 19 C 1.47156 * 118.03547 * 50.53633 * 6 5 3 20 20 C 1.53288 * 108.38318 * 309.46335 * 19 6 5 21 21 O 1.42963 * 109.22697 * 52.30460 * 20 19 6 22 22 H 1.09001 * 109.47002 * 299.99574 * 1 2 3 23 23 H 1.08993 * 109.46955 * 60.00011 * 1 2 3 24 24 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46801 * 120.00272 * 2 1 3 26 26 H 1.09001 * 109.46998 * 239.99868 * 2 1 3 27 27 H 1.08995 * 109.47217 * 59.99424 * 4 3 2 28 28 H 1.08991 * 109.47475 * 180.02562 * 4 3 2 29 29 H 1.09000 * 109.47014 * 299.99996 * 4 3 2 30 30 H 1.08999 * 109.67800 * 307.50126 * 5 3 2 31 31 H 1.08998 * 109.67922 * 68.04920 * 5 3 2 32 32 H 1.08999 * 109.47198 * 300.00798 * 9 7 6 33 33 H 1.09004 * 109.46607 * 60.00053 * 9 7 6 34 34 H 0.96990 * 120.00053 * 180.02562 * 14 13 11 35 35 H 1.08996 * 109.67619 * 189.73588 * 19 6 5 36 36 H 1.09000 * 109.70914 * 69.20837 * 19 6 5 37 37 H 1.09001 * 109.51457 * 292.37853 * 20 19 6 38 38 H 1.09004 * 109.55117 * 172.25382 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.4325 2.1994 -1.1827 5 6 3.5684 1.4452 -0.1196 6 7 4.0463 2.8239 0.0707 7 6 4.8953 3.3914 -0.8088 8 8 5.2763 2.7648 -1.7747 9 6 5.3712 4.8048 -0.5920 10 16 6.4913 5.2767 -1.9330 11 6 6.8828 6.9224 -1.4400 12 1 6.4513 7.3333 -0.5392 13 6 7.7448 7.6910 -2.2097 14 7 8.2704 7.1904 -3.3079 15 14 8.1593 9.4360 -1.6874 16 1 9.3570 9.4186 -0.8096 17 1 8.4395 10.2596 -2.8909 18 1 7.0109 10.0168 -0.9464 19 6 3.5702 3.5644 1.2499 20 6 2.0419 3.4584 1.3027 21 8 1.6623 2.0824 1.2213 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5139 0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 0.3460 2.1985 -1.0952 28 1 1.7965 3.2267 -1.1823 29 1 1.7223 1.7119 -2.1136 30 1 3.9976 0.7989 0.6459 31 1 3.8599 1.0886 -1.1075 32 1 4.5147 5.4788 -0.5802 33 1 5.8970 4.8690 0.3607 34 1 8.8731 7.7274 -3.8456 35 1 3.8631 4.6111 1.1688 36 1 3.9997 3.1320 2.1536 37 1 1.6097 4.0054 0.4648 38 1 1.6790 3.8813 2.2396 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189032563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:30 Heat of formation + Delta-G solvation = -105.364503 kcal Electronic energy + Delta-G solvation = -19529.621476 eV Core-core repulsion = 16497.501095 eV Total energy + Delta-G solvation = -3032.120381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 273.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.67080 -39.71097 -36.17107 -35.35090 -34.59735 -31.83222 -30.64505 -29.76887 -27.83187 -27.35442 -25.12065 -23.74440 -21.03331 -20.27621 -19.57941 -18.27427 -17.63454 -17.02238 -16.91564 -16.86348 -16.19224 -15.83373 -15.79824 -15.05430 -14.86081 -14.74042 -14.49983 -14.21067 -13.61789 -13.28536 -13.17584 -13.04585 -12.96170 -12.90008 -12.88280 -12.59635 -12.39793 -11.95064 -11.74596 -11.69203 -11.52875 -11.15505 -11.04014 -10.87707 -10.29400 -9.59499 -8.69780 -8.35886 -6.14891 1.21456 1.42188 1.43533 1.49707 1.55113 1.97349 2.25819 2.71091 2.98421 3.20302 3.53288 3.65777 3.79723 3.88165 3.96335 4.11554 4.21834 4.27316 4.37334 4.40860 4.51736 4.57246 4.62728 4.63722 4.71197 4.82644 4.87149 5.03098 5.07767 5.15324 5.29166 5.37743 5.40448 5.50020 6.16274 6.18210 6.19261 7.04548 7.05427 8.73382 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.040571 B = 0.003963 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.984133 B = 7063.362761 C = 7395.690061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C 0.109 3.891 4 C -0.175 4.175 5 C 0.087 3.913 6 N -0.610 5.610 7 C 0.535 3.465 8 O -0.563 6.563 9 C -0.124 4.124 10 S -0.151 6.151 11 C -0.546 4.546 12 H 0.084 0.916 13 C 0.014 3.986 14 N -0.911 5.911 15 Si 1.000 3.000 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.257 1.257 19 C 0.066 3.934 20 C 0.045 3.955 21 O -0.373 6.373 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.271 0.729 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.451 -9.821 12.235 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C 0.069 3.931 4 C -0.232 4.232 5 C -0.035 4.035 6 N -0.345 5.345 7 C 0.323 3.677 8 O -0.441 6.441 9 C -0.275 4.275 10 S 0.077 5.923 11 C -0.694 4.694 12 H 0.102 0.898 13 C -0.191 4.191 14 N -0.548 5.548 15 Si 0.821 3.179 16 H -0.193 1.193 17 H -0.203 1.203 18 H -0.180 1.180 19 C -0.056 4.056 20 C -0.032 4.032 21 O -0.292 6.292 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.103 0.897 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.889 -10.823 10.818 22.060 hybrid contribution 0.432 1.824 0.693 1.999 sum -15.457 -8.999 11.511 21.269 Atomic orbital electron populations 1.21739 0.94172 1.02288 1.02150 1.21497 0.97627 0.91691 1.03561 1.21882 0.91241 0.95029 0.84974 1.22397 1.02339 1.00256 0.98223 1.22400 0.95064 0.82573 1.03493 1.48102 1.46017 1.15086 1.25262 1.20149 0.78017 0.87781 0.81765 1.90672 1.57633 1.64806 1.30998 1.23360 1.03596 0.95969 1.04556 1.85604 1.57223 1.17202 1.32299 1.23192 1.33712 0.98955 1.13531 0.89812 1.26141 0.94610 1.04054 0.94315 1.70185 1.30284 1.39211 1.15110 0.84941 0.79071 0.75923 0.77966 1.19304 1.20340 1.18049 1.22741 0.96548 0.98625 0.87732 1.23132 0.92371 0.83283 1.04442 1.87974 1.79692 1.24126 1.37383 0.92514 0.92485 0.91470 0.90372 0.89717 0.89923 0.93730 0.91864 0.89805 0.90000 0.87383 0.87381 0.91970 0.87855 0.88861 0.92573 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.32 71.98 0.67 -1.35 16 2 C -0.11 -1.67 5.23 30.60 0.16 -1.51 16 3 C 0.11 2.20 0.80 -10.70 -0.01 2.19 16 4 C -0.17 -3.77 7.61 71.98 0.55 -3.22 16 5 C 0.09 2.18 5.31 86.35 0.46 2.64 16 6 N -0.61 -17.21 2.54 -817.36 -2.08 -19.29 16 7 C 0.53 20.57 7.73 87.66 0.68 21.25 16 8 O -0.56 -26.68 15.33 -3.02 -0.05 -26.73 16 9 C -0.12 -4.97 4.53 71.24 0.32 -4.65 16 10 S -0.15 -8.40 20.57 -56.49 -1.16 -9.56 16 11 C -0.55 -31.05 9.50 67.95 0.65 -30.40 16 12 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 13 C 0.01 0.77 5.49 84.85 0.47 1.24 16 14 N -0.91 -55.95 13.22 21.65 0.29 -55.67 16 15 Si 1.00 43.26 29.55 68.60 2.03 45.29 16 16 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 17 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 18 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 19 C 0.07 1.32 6.54 86.35 0.56 1.88 16 20 C 0.04 0.76 6.60 72.08 0.48 1.23 16 21 O -0.37 -7.35 9.76 -148.98 -1.45 -8.81 16 22 H 0.06 0.85 7.82 -2.39 -0.02 0.84 16 23 H 0.06 0.79 6.35 -2.39 -0.02 0.77 16 24 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.08 1.51 6.35 -2.39 -0.02 1.49 16 28 H 0.04 1.11 6.12 -2.39 -0.01 1.10 16 29 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.08 2.38 7.08 -2.39 -0.02 2.37 16 32 H 0.11 3.90 7.66 -2.40 -0.02 3.88 16 33 H 0.11 3.93 8.02 -2.39 -0.02 3.91 16 34 H 0.27 15.44 8.31 -92.72 -0.77 14.67 16 35 H 0.10 1.97 6.05 -2.39 -0.01 1.95 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.03 6.25 -2.39 -0.01 1.01 16 38 H 0.14 1.49 8.14 -2.38 -0.02 1.47 16 Total: -1.00 -74.44 315.77 3.60 -70.84 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 1.04 Total: 14.63 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 4.98 Total: -10.71 kcal Atomic # 7 Polarization: -73.16 SS G_CDS: -1.79 Total: -74.95 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.50 Total: -35.53 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.56 kcal Total: -74.44 3.60 -70.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189032563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.523 kcal (2) G-P(sol) polarization free energy of solvation -74.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds