Wall clock time and date at job start Mon Mar 30 2020 00:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48503 * 109.47101 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47456 * 299.99977 * 3 2 1 6 6 H 1.48498 * 109.47352 * 60.00453 * 3 2 1 7 7 C 1.37882 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99634 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99875 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47102 * 180.02562 * 9 7 2 11 11 C 1.33878 * 122.76150 * 90.02276 * 10 9 7 12 12 O 1.21224 * 125.39650 * 359.97438 * 11 10 9 13 13 C 1.51313 * 109.20530 * 180.02562 * 11 10 9 14 14 C 1.54227 * 103.69342 * 359.92201 * 13 11 10 15 15 H 1.09007 * 110.60335 * 118.59605 * 14 13 11 16 16 C 1.53000 * 110.60662 * 241.55862 * 14 13 11 17 17 C 1.50703 * 109.46907 * 185.00158 * 16 14 13 18 18 C 1.38232 * 119.99792 * 269.72509 * 17 16 14 19 19 C 1.38240 * 119.99737 * 179.78878 * 18 17 16 20 20 C 1.38238 * 120.00045 * 0.46699 * 19 18 17 21 21 C 1.38233 * 119.99524 * 359.76830 * 20 19 18 22 22 C 1.38230 * 120.00455 * 0.02562 * 21 20 19 23 23 C 1.33871 * 122.75948 * 270.02358 * 10 9 7 24 24 O 1.21229 * 125.40167 * 0.02562 * 23 10 9 25 25 H 0.96992 * 120.00018 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47374 * 60.00381 * 9 7 2 27 27 H 1.09001 * 109.47394 * 300.00378 * 9 7 2 28 28 H 1.09002 * 110.60607 * 118.51938 * 13 11 10 29 29 H 1.09002 * 110.60509 * 241.32619 * 13 11 10 30 30 H 1.08999 * 109.47218 * 305.00326 * 16 14 13 31 31 H 1.08994 * 109.46886 * 65.00516 * 16 14 13 32 32 H 1.07996 * 120.00576 * 0.02562 * 18 17 16 33 33 H 1.08001 * 120.00145 * 180.25212 * 19 18 17 34 34 H 1.07997 * 119.99827 * 179.78457 * 20 19 18 35 35 H 1.08007 * 119.99799 * 180.02562 * 21 20 19 36 36 H 1.08001 * 120.00204 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6736 -4.1636 1.1253 12 8 2.3805 -3.8208 2.2505 13 6 3.6300 -5.2812 0.7706 14 6 3.6316 -5.2847 -0.7717 15 1 4.6302 -5.0739 -1.1547 16 6 3.1192 -6.6230 -1.3076 17 6 3.2464 -6.6446 -2.8091 18 6 2.2024 -6.1985 -3.5977 19 6 2.3208 -6.2143 -4.9749 20 6 3.4795 -6.6851 -5.5637 21 6 4.5216 -7.1357 -4.7751 22 6 4.4049 -7.1160 -3.3979 23 6 2.6742 -4.1630 -1.1263 24 8 2.3818 -3.8196 -2.2516 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8896 28 1 4.6277 -5.0687 1.1548 29 1 3.2667 -6.2339 1.1560 30 1 3.7085 -7.4348 -0.8813 31 1 2.0728 -6.7489 -1.0299 32 1 1.2957 -5.8342 -3.1379 33 1 1.5067 -5.8620 -5.5910 34 1 3.5706 -6.7007 -6.6397 35 1 5.4271 -7.5032 -5.2351 36 1 5.2189 -7.4684 -2.7818 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191399969.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:33 Heat of formation + Delta-G solvation = -48.371638 kcal Electronic energy + Delta-G solvation = -20638.067791 eV Core-core repulsion = 17472.974854 eV Total energy + Delta-G solvation = -3165.092936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.27108 -39.11479 -37.76661 -35.30986 -34.61300 -32.81119 -31.20834 -30.77047 -27.85204 -26.75460 -24.46718 -23.09474 -22.48966 -21.57888 -20.86253 -18.75845 -16.99648 -16.70641 -16.50959 -15.84883 -15.54636 -15.06220 -14.98787 -14.50463 -13.92543 -13.68712 -13.62868 -13.41156 -13.22774 -13.09225 -12.47196 -12.31127 -12.16540 -12.00542 -11.52293 -11.19975 -11.08129 -10.89942 -10.85244 -10.78149 -10.36391 -9.94714 -9.62882 -9.32528 -8.78145 -8.62772 -8.53276 -8.50157 -6.15461 -4.20564 1.42604 1.54328 2.15124 3.27132 3.30849 3.34772 3.42779 3.49932 3.87693 4.31820 4.37695 4.60067 4.67479 4.91768 4.97951 5.00889 5.09958 5.19359 5.21295 5.33413 5.45984 5.56980 5.61101 5.71447 5.80674 5.95501 6.11119 6.16347 6.53530 6.54640 6.63671 6.72777 6.89213 7.11263 7.20094 7.77618 7.85637 8.02478 8.09067 8.53828 8.81791 9.44468 10.94201 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.020416 B = 0.005280 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.165517 B = 5302.194259 C = 6116.320167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.232 3.768 10 N -0.556 5.556 11 C 0.522 3.478 12 O -0.488 6.488 13 C -0.157 4.157 14 C -0.124 4.124 15 H 0.117 0.883 16 C -0.061 4.061 17 C -0.087 4.087 18 C -0.080 4.080 19 C -0.119 4.119 20 C -0.124 4.124 21 C -0.129 4.129 22 C -0.116 4.116 23 C 0.523 3.477 24 O -0.472 6.472 25 H 0.265 0.735 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.117 0.883 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.158 -16.499 -5.790 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.077 0.923 9 C 0.114 3.886 10 N -0.297 5.297 11 C 0.310 3.690 12 O -0.360 6.360 13 C -0.197 4.197 14 C -0.146 4.146 15 H 0.135 0.865 16 C -0.099 4.099 17 C -0.087 4.087 18 C -0.098 4.098 19 C -0.137 4.137 20 C -0.142 4.142 21 C -0.147 4.147 22 C -0.134 4.134 23 C 0.310 3.690 24 O -0.343 6.343 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.135 0.865 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.630 -15.957 -5.794 18.612 hybrid contribution 0.444 1.182 -0.046 1.263 sum 8.074 -14.776 -5.840 17.822 Atomic orbital electron populations 1.69933 1.06028 1.27278 1.49664 1.24908 0.94953 0.99393 0.94551 0.86347 0.79954 0.82876 0.77731 1.19708 1.20699 1.20679 1.21259 0.93321 0.90196 1.52306 0.92262 1.19628 0.87431 0.81820 0.99700 1.47013 1.41897 1.33099 1.07684 1.20544 0.80914 0.83035 0.84557 1.90718 1.59255 1.64497 1.21568 1.22582 1.01924 1.00106 0.95105 1.22176 1.01471 0.95487 0.95464 0.86515 1.20477 1.02573 0.95058 0.91767 1.19714 0.94534 0.99547 0.94933 1.21060 0.98783 0.96297 0.93624 1.21125 0.97987 0.99550 0.95018 1.21105 0.93966 0.99553 0.99543 1.21032 0.98705 1.01076 0.93851 1.20957 0.97083 1.00503 0.94853 1.20533 0.80956 0.82830 0.84645 1.90719 1.58712 1.63619 1.21250 0.92493 0.93197 0.93224 0.86847 0.86885 0.89397 0.90410 0.86147 0.86290 0.86552 0.86494 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 2 C 0.06 1.87 5.46 -17.82 -0.10 1.78 16 3 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.53 -15.36 9.39 -34.44 -0.32 -15.69 16 8 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 9 C 0.23 6.15 5.31 -5.19 -0.03 6.12 16 10 N -0.56 -11.96 2.54 -116.48 -0.30 -12.26 16 11 C 0.52 10.00 8.08 -11.09 -0.09 9.91 16 12 O -0.49 -11.11 17.48 5.61 0.10 -11.01 16 13 C -0.16 -1.92 6.66 -26.94 -0.18 -2.10 16 14 C -0.12 -1.61 3.09 -90.65 -0.28 -1.89 16 15 H 0.12 1.36 8.14 -51.93 -0.42 0.93 16 16 C -0.06 -0.65 4.67 -27.88 -0.13 -0.78 16 17 C -0.09 -1.09 4.84 -104.62 -0.51 -1.59 16 18 C -0.08 -1.12 7.73 -39.58 -0.31 -1.43 16 19 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 20 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 21 C -0.13 -1.39 10.05 -39.59 -0.40 -1.79 16 22 C -0.12 -1.27 9.70 -39.59 -0.38 -1.66 16 23 C 0.52 9.96 7.26 -10.91 -0.08 9.88 16 24 O -0.47 -10.34 14.75 5.60 0.08 -10.26 16 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.05 1.40 7.83 -51.93 -0.41 0.99 16 27 H 0.05 1.40 7.83 -51.93 -0.41 1.00 16 28 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.11 1.05 7.74 -51.93 -0.40 0.65 16 30 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 31 H 0.08 0.84 8.06 -51.93 -0.42 0.42 16 32 H 0.12 1.81 7.57 -52.49 -0.40 1.41 16 33 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 35 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 312.97 15.07 4.72 4.72 Total: -1.00 -34.10 312.97 -7.81 -41.91 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -4.53 Total: -1.38 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.60 Total: -2.99 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.44 Total: -38.05 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.18 Total: -21.27 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -34.10 -7.81 -41.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191399969.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.465 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds