Wall clock time and date at job start Mon Mar 30 2020 00:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99706 * 2 1 4 4 H 1.48502 * 109.46691 * 269.99852 * 3 2 1 5 5 H 1.48495 * 109.47209 * 29.99554 * 3 2 1 6 6 H 1.48498 * 109.47119 * 149.99837 * 3 2 1 7 7 C 1.37871 * 120.00074 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00153 * 180.02562 * 7 2 1 9 9 C 1.50709 * 120.00153 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.46878 * 179.97438 * 9 7 2 11 11 C 1.33873 * 122.76511 * 89.97377 * 10 9 7 12 12 O 1.21232 * 125.39568 * 359.95778 * 11 10 9 13 13 C 1.51306 * 109.21028 * 179.97438 * 11 10 9 14 14 C 1.54233 * 103.55347 * 0.02562 * 13 11 10 15 15 H 1.08994 * 110.60584 * 241.32173 * 14 13 11 16 16 C 1.53006 * 110.60401 * 118.51651 * 14 13 11 17 17 C 1.50698 * 109.46914 * 174.99915 * 16 14 13 18 18 C 1.38238 * 120.00258 * 269.72954 * 17 16 14 19 19 C 1.38237 * 120.00060 * 179.81037 * 18 17 16 20 20 C 1.38236 * 120.00114 * 0.39688 * 19 18 17 21 21 C 1.38238 * 119.99717 * 359.85314 * 20 19 18 22 22 C 1.38233 * 120.00383 * 359.95749 * 21 20 19 23 23 C 1.33878 * 122.75957 * 269.94770 * 10 9 7 24 24 O 1.21225 * 125.39825 * 0.04634 * 23 10 9 25 25 H 0.97001 * 120.00133 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.46933 * 59.99394 * 9 7 2 27 27 H 1.09004 * 109.46486 * 299.99587 * 9 7 2 28 28 H 1.08998 * 110.60912 * 241.48782 * 13 11 10 29 29 H 1.09002 * 110.60884 * 118.51256 * 13 11 10 30 30 H 1.08995 * 109.46794 * 295.00110 * 16 14 13 31 31 H 1.09000 * 109.47314 * 55.00244 * 16 14 13 32 32 H 1.07995 * 119.99684 * 359.97438 * 18 17 16 33 33 H 1.08002 * 119.99967 * 180.22558 * 19 18 17 34 34 H 1.07995 * 120.00026 * 179.83811 * 20 19 18 35 35 H 1.07999 * 119.99879 * 179.97438 * 21 20 19 36 36 H 1.08003 * 120.00483 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 2.6744 -4.1630 1.1263 12 8 2.3823 -3.8194 2.2516 13 6 3.6297 -5.2814 0.7716 14 6 3.6294 -5.2817 -0.7707 15 1 3.2668 -6.2353 -1.1541 16 6 5.0302 -4.9842 -1.3095 17 6 5.0283 -5.1114 -2.8111 18 6 5.3166 -6.3273 -3.4022 19 6 5.3109 -6.4449 -4.7795 20 6 5.0251 -5.3446 -5.5660 21 6 4.7419 -4.1275 -4.9750 22 6 4.7437 -4.0108 -3.5976 23 6 2.6732 -4.1639 -1.1253 24 8 2.3799 -3.8213 -2.2505 25 1 -0.4850 0.8400 -0.0004 26 1 0.6247 -2.5571 -0.8896 27 1 0.6241 -2.5567 0.8904 28 1 3.2648 -6.2340 1.1558 29 1 4.6280 -5.0692 1.1546 30 1 5.3189 -3.9708 -1.0310 31 1 5.7408 -5.6939 -0.8857 32 1 5.5436 -7.1860 -2.7878 33 1 5.5326 -7.3958 -5.2412 34 1 5.0233 -5.4359 -6.6421 35 1 4.5190 -3.2677 -5.5895 36 1 4.5228 -3.0597 -3.1359 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000191399985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:34 Heat of formation + Delta-G solvation = -69.761297 kcal Electronic energy + Delta-G solvation = -20751.533101 eV Core-core repulsion = 17585.512640 eV Total energy + Delta-G solvation = -3166.020461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.74834 -40.08766 -39.30250 -36.82609 -36.13209 -34.71159 -32.45416 -31.64439 -29.59590 -28.01521 -25.89317 -24.98389 -23.38082 -22.79614 -21.93341 -20.26725 -18.99342 -17.98446 -17.71249 -17.43735 -17.08782 -16.57115 -16.00714 -15.93869 -15.35002 -15.07892 -14.93390 -14.71711 -14.33065 -14.23157 -14.10990 -13.70428 -13.32910 -13.27643 -13.07278 -12.89090 -12.74785 -12.41075 -12.12260 -11.99548 -11.81125 -11.72044 -11.18529 -10.85269 -10.72387 -10.47278 -9.67264 -9.48614 -8.37625 -6.52712 0.52362 0.62907 0.69634 1.30604 1.33556 1.43874 1.85048 2.02831 2.31141 2.94465 2.96575 3.23041 3.37813 3.56667 4.00555 4.09503 4.10962 4.26734 4.38366 4.41447 4.58963 4.67803 4.73912 4.77237 4.79739 4.85862 4.95584 4.98090 5.07411 5.26481 5.29325 5.51775 5.67456 5.73928 5.81225 5.84022 6.20889 6.25548 6.51407 6.61775 6.96779 7.19501 8.72628 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.005942 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.622907 B = 4711.003117 C = 5725.769882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.011 3.989 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.552 4.552 8 H 0.054 0.946 9 C 0.245 3.755 10 N -0.574 5.574 11 C 0.508 3.492 12 O -0.536 6.536 13 C -0.129 4.129 14 C -0.102 4.102 15 H 0.152 0.848 16 C -0.060 4.060 17 C -0.098 4.098 18 C -0.110 4.110 19 C -0.129 4.129 20 C -0.130 4.130 21 C -0.144 4.144 22 C -0.110 4.110 23 C 0.510 3.490 24 O -0.512 6.512 25 H 0.271 0.729 26 H 0.018 0.982 27 H 0.019 0.981 28 H 0.160 0.840 29 H 0.150 0.850 30 H 0.060 0.940 31 H 0.141 0.859 32 H 0.160 0.840 33 H 0.150 0.850 34 H 0.137 0.863 35 H 0.113 0.887 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.087 -16.693 -5.689 22.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.189 4.189 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.189 1.189 7 C -0.590 4.590 8 H 0.072 0.928 9 C 0.125 3.875 10 N -0.315 5.315 11 C 0.300 3.700 12 O -0.411 6.411 13 C -0.168 4.168 14 C -0.123 4.123 15 H 0.170 0.830 16 C -0.097 4.097 17 C -0.098 4.098 18 C -0.127 4.127 19 C -0.147 4.147 20 C -0.148 4.148 21 C -0.162 4.162 22 C -0.129 4.129 23 C 0.300 3.700 24 O -0.385 6.385 25 H 0.080 0.920 26 H 0.036 0.964 27 H 0.037 0.963 28 H 0.177 0.823 29 H 0.167 0.833 30 H 0.079 0.921 31 H 0.159 0.841 32 H 0.177 0.823 33 H 0.167 0.833 34 H 0.154 0.846 35 H 0.131 0.869 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.581 -16.188 -5.696 21.884 hybrid contribution -0.696 1.898 -0.144 2.027 sum 12.885 -14.290 -5.840 20.108 Atomic orbital electron populations 1.70041 1.07643 1.28647 1.49946 1.25897 0.95921 1.03307 0.93768 0.85336 0.78587 0.77793 0.78693 1.19520 1.19642 1.18948 1.21479 0.93148 0.91512 1.52889 0.92772 1.18972 0.88155 0.83777 0.96575 1.47204 1.41661 1.32493 1.10131 1.21892 0.81055 0.83983 0.83061 1.90687 1.61090 1.66245 1.23120 1.22723 1.01430 0.98495 0.94118 1.22194 0.95546 0.98442 0.96101 0.83012 1.20612 0.93981 1.04186 0.90942 1.19928 1.00270 0.93881 0.95697 1.21380 0.99144 0.96854 0.95343 1.21489 0.99927 0.99174 0.94125 1.21395 0.99767 0.92711 1.00889 1.21255 1.01256 0.98863 0.94806 1.21059 0.98578 0.98622 0.94625 1.21710 0.81032 0.83930 0.83297 1.90697 1.59614 1.65568 1.22664 0.91983 0.96396 0.96309 0.82276 0.83259 0.92088 0.84119 0.82280 0.83263 0.84558 0.86911 0.89639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.22 13.29 21.45 0.28 -56.93 16 2 C 0.01 0.66 5.46 84.65 0.46 1.12 16 3 Si 0.97 45.95 29.54 68.60 2.03 47.97 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 5 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.55 -33.15 9.39 25.60 0.24 -32.91 16 8 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 9 C 0.25 13.97 5.31 85.64 0.45 14.42 16 10 N -0.57 -25.55 2.54 -760.73 -1.93 -27.48 16 11 C 0.51 19.28 8.07 87.99 0.71 19.99 16 12 O -0.54 -24.86 17.48 -2.88 -0.05 -24.91 16 13 C -0.13 -2.55 6.67 30.46 0.20 -2.34 16 14 C -0.10 -2.25 3.08 -10.93 -0.03 -2.29 16 15 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 16 C -0.06 -1.15 4.67 29.85 0.14 -1.01 16 17 C -0.10 -2.32 4.84 -19.86 -0.10 -2.42 16 18 C -0.11 -1.95 9.70 22.27 0.22 -1.73 16 19 C -0.13 -2.35 10.05 22.27 0.22 -2.12 16 20 C -0.13 -2.87 10.05 22.27 0.22 -2.64 16 21 C -0.14 -4.06 10.05 22.27 0.22 -3.84 16 22 C -0.11 -3.45 7.70 22.27 0.17 -3.28 16 23 C 0.51 19.61 7.25 87.99 0.64 20.25 16 24 O -0.51 -23.59 14.67 -2.86 -0.04 -23.63 16 25 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.02 1.11 7.83 -2.39 -0.02 1.09 16 27 H 0.02 1.16 7.83 -2.38 -0.02 1.14 16 28 H 0.16 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.15 2.07 7.74 -2.39 -0.02 2.05 16 30 H 0.06 1.43 8.06 -2.39 -0.02 1.41 16 31 H 0.14 1.30 8.08 -2.39 -0.02 1.28 16 32 H 0.16 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.14 2.33 8.06 -2.91 -0.02 2.30 16 35 H 0.11 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.09 3.21 7.54 -2.91 -0.02 3.18 16 Total: -1.00 -82.49 312.82 5.14 -77.35 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.08 Total: 6.44 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 3.78 Total: 1.19 kcal Atomic # 7 Polarization: -82.76 SS G_CDS: -1.65 Total: -84.41 kcal Atomic # 8 Polarization: -48.45 SS G_CDS: -0.09 Total: -48.55 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.97 kcal Total: -82.49 5.14 -77.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191399985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.587 kcal (2) G-P(sol) polarization free energy of solvation -82.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds