Wall clock time and date at job start Mon Mar 30 2020 01:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32683 * 1 3 3 C 1.47666 * 119.99742 * 2 1 4 4 C 1.39716 * 119.99678 * 180.02562 * 3 2 1 5 5 C 1.37596 * 120.00767 * 180.02562 * 4 3 2 6 6 C 1.39745 * 119.99289 * 359.97438 * 5 4 3 7 7 C 1.47694 * 120.00208 * 179.97438 * 6 5 4 8 8 O 1.21570 * 119.99976 * 351.49152 * 7 6 5 9 9 N 1.34779 * 120.00050 * 171.48908 * 7 6 5 10 10 C 1.47576 * 134.49237 * 181.89638 * 9 7 6 11 11 C 1.53953 * 86.11496 * 155.36147 * 10 9 7 12 12 O 1.42900 * 113.73946 * 269.15714 * 11 10 9 13 13 C 1.50693 * 113.73901 * 137.95660 * 11 10 9 14 14 H 1.07998 * 120.00541 * 17.16336 * 13 11 10 15 15 C 1.37885 * 119.99629 * 197.15964 * 13 11 10 16 16 N 1.31514 * 119.99733 * 191.82563 * 15 13 11 17 17 Si 1.86793 * 120.00067 * 11.83313 * 15 13 11 18 18 H 1.48503 * 109.47157 * 179.97438 * 17 15 13 19 19 H 1.48505 * 109.47051 * 299.99633 * 17 15 13 20 20 H 1.48503 * 109.47375 * 59.99418 * 17 15 13 21 21 C 1.47818 * 134.45355 * 1.77042 * 9 7 6 22 22 C 1.39741 * 119.99488 * 0.25251 * 6 5 4 23 23 C 1.37604 * 119.99552 * 359.51454 * 22 6 5 24 24 H 1.08007 * 120.00446 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.00431 * 179.97438 * 1 2 3 26 26 H 1.07995 * 120.00062 * 180.02562 * 2 1 3 27 27 H 1.08002 * 119.98939 * 0.02562 * 4 3 2 28 28 H 1.07992 * 120.00390 * 180.02562 * 5 4 3 29 29 H 1.09008 * 113.76586 * 41.06628 * 10 9 7 30 30 H 1.08996 * 113.77453 * 269.66006 * 10 9 7 31 31 H 0.96705 * 113.99854 * 176.86236 * 12 11 10 32 32 H 0.96999 * 120.00420 * 354.87172 * 16 15 13 33 33 H 1.08999 * 113.76830 * 90.37855 * 21 9 7 34 34 H 1.08996 * 113.83648 * 318.91199 * 21 9 7 35 35 H 1.07998 * 120.00377 * 179.72184 * 22 6 5 36 36 H 1.07997 * 120.00107 * 180.23163 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2789 0.0000 4 6 3.4623 1.2788 -0.0005 5 6 4.1504 2.4704 0.0000 6 6 3.4517 3.6806 0.0005 7 6 4.1902 4.9597 0.0017 8 8 5.3958 4.9654 0.1579 9 7 3.5275 6.1206 -0.1705 10 6 3.9296 7.5378 -0.2586 11 6 2.6291 7.7486 -1.0552 12 8 2.7880 7.5952 -2.4670 13 6 1.8851 9.0045 -0.6807 14 1 2.3894 9.7886 -0.1355 15 6 0.5606 9.1524 -1.0341 16 7 -0.0236 10.3250 -0.9192 17 14 -0.4041 7.6871 -1.6757 18 1 -1.7955 8.1062 -1.9818 19 1 0.2411 7.1718 -2.9100 20 1 -0.4250 6.6183 -0.6449 21 6 2.1060 6.4845 -0.3493 22 6 2.0543 3.6805 0.0059 23 6 1.3664 2.4887 0.0005 24 1 -0.5401 0.9353 0.0004 25 1 -0.5401 -0.9352 -0.0004 26 1 1.8668 -0.9353 -0.0004 27 1 4.0021 0.3434 -0.0014 28 1 5.2303 2.4703 -0.0008 29 1 4.8346 7.7021 -0.8436 30 1 3.9439 8.0510 0.7029 31 1 1.9645 7.6795 -2.9669 32 1 0.4538 11.0674 -0.5170 33 1 1.5836 6.6876 0.5855 34 1 1.5578 5.8094 -1.0065 35 1 1.5142 4.6157 0.0108 36 1 0.2865 2.4886 0.0008 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193138980.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:00 Heat of formation + Delta-G solvation = 13.265963 kcal Electronic energy + Delta-G solvation = -20585.875857 eV Core-core repulsion = 17423.455728 eV Total energy + Delta-G solvation = -3162.420129 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 273.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.26551 -38.91169 -37.43685 -34.39548 -34.19512 -32.67570 -31.27433 -29.96394 -28.49416 -26.04945 -25.20228 -23.58429 -22.59272 -20.48571 -19.70660 -19.16905 -18.03285 -17.11008 -16.75732 -15.72217 -15.45824 -15.10629 -14.87489 -14.53605 -14.04375 -13.74343 -13.54911 -13.33779 -13.08999 -12.75566 -12.67137 -12.53771 -12.12203 -11.97134 -11.42993 -11.35288 -10.89668 -10.76361 -10.50268 -10.47082 -10.07707 -9.56707 -9.44913 -9.05939 -9.03462 -8.54410 -8.37443 -8.04836 -6.77940 -4.52829 0.54451 1.37063 2.16466 3.02625 3.08401 3.19081 3.24892 3.36890 4.01332 4.11993 4.50740 4.63932 4.70134 4.81706 4.89500 5.04130 5.15466 5.30195 5.32306 5.42823 5.54676 5.70822 5.84185 5.91597 5.97907 6.10993 6.12078 6.14909 6.25892 6.30597 6.38348 6.51344 6.60061 6.66012 6.85908 7.47284 8.03157 8.18212 8.51384 8.54000 8.65834 9.23176 10.58550 Molecular weight = 273.12amu Principal moments of inertia in cm(-1) A = 0.019600 B = 0.005946 C = 0.004771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.244918 B = 4707.982491 C = 5867.602940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.120 4.120 3 C -0.045 4.045 4 C -0.120 4.120 5 C -0.063 4.063 6 C -0.120 4.120 7 C 0.571 3.429 8 O -0.557 6.557 9 N -0.625 5.625 10 C 0.130 3.870 11 C 0.200 3.800 12 O -0.565 6.565 13 C -0.616 4.616 14 H 0.071 0.929 15 C 0.036 3.964 16 N -0.887 5.887 17 Si 1.037 2.963 18 H -0.276 1.276 19 H -0.278 1.278 20 H -0.273 1.273 21 C 0.049 3.951 22 C -0.099 4.099 23 C -0.123 4.123 24 H 0.104 0.896 25 H 0.105 0.895 26 H 0.119 0.881 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.368 0.632 32 H 0.275 0.725 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.145 0.855 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.859 -17.176 1.648 17.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 C -0.045 4.045 4 C -0.138 4.138 5 C -0.082 4.082 6 C -0.123 4.123 7 C 0.361 3.639 8 O -0.437 6.437 9 N -0.358 5.358 10 C 0.008 3.992 11 C 0.158 3.842 12 O -0.374 6.374 13 C -0.654 4.654 14 H 0.090 0.910 15 C -0.172 4.172 16 N -0.519 5.519 17 Si 0.865 3.135 18 H -0.202 1.202 19 H -0.205 1.205 20 H -0.199 1.199 21 C -0.073 4.073 22 C -0.117 4.117 23 C -0.141 4.141 24 H 0.122 0.878 25 H 0.123 0.877 26 H 0.137 0.863 27 H 0.147 0.853 28 H 0.153 0.847 29 H 0.094 0.906 30 H 0.111 0.889 31 H 0.217 0.783 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.162 0.838 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.975 -17.840 1.322 17.915 hybrid contribution 0.817 0.498 0.564 1.111 sum -0.158 -17.342 1.887 17.445 Atomic orbital electron populations 1.24460 0.95705 1.02441 0.98685 1.21824 0.95246 0.95686 1.01006 1.19293 0.93422 0.93175 0.98603 1.21174 0.93136 0.97967 1.01546 1.21185 1.00712 0.90718 0.95565 1.20088 0.93769 0.93659 1.04764 1.17892 0.86511 0.82748 0.76717 1.90716 1.14066 1.87090 1.51867 1.50028 1.10347 1.05893 1.69515 1.23261 0.99111 0.77376 0.99411 1.20425 0.92389 0.91640 0.79712 1.86386 1.37224 1.94956 1.18829 1.22219 0.97750 1.03073 1.42393 0.91044 1.25820 0.95365 1.01257 0.94801 1.70795 1.42133 1.00847 1.38156 0.84191 0.77509 0.74929 0.76853 1.20171 1.20483 1.19905 1.24897 0.82948 0.97935 1.01556 1.22059 0.93662 0.99688 0.96322 1.21264 1.00100 0.91468 1.01287 0.87812 0.87693 0.86314 0.85340 0.84655 0.90614 0.88865 0.78253 0.91478 0.88299 0.90877 0.83755 0.85227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 14.15 28.84 0.41 -1.03 16 2 C -0.12 -1.11 9.90 -37.62 -0.37 -1.49 16 3 C -0.04 -0.53 5.87 -104.94 -0.62 -1.15 16 4 C -0.12 -1.46 9.76 -39.26 -0.38 -1.84 16 5 C -0.06 -0.93 9.57 -39.25 -0.38 -1.30 16 6 C -0.12 -2.06 5.88 -104.91 -0.62 -2.67 16 7 C 0.57 11.67 7.98 -12.40 -0.10 11.58 16 8 O -0.56 -12.70 17.09 5.30 0.09 -12.61 16 9 N -0.63 -12.85 3.61 -179.28 -0.65 -13.49 16 10 C 0.13 2.75 8.23 -2.97 -0.02 2.73 16 11 C 0.20 4.48 1.07 -90.84 -0.10 4.38 16 12 O -0.57 -12.96 13.46 -35.23 -0.47 -13.44 16 13 C -0.62 -15.62 9.04 -34.44 -0.31 -15.93 16 14 H 0.07 1.95 8.05 -52.49 -0.42 1.53 16 15 C 0.04 0.91 5.44 -17.82 -0.10 0.81 16 16 N -0.89 -24.64 13.70 55.43 0.76 -23.88 16 17 Si 1.04 21.46 24.65 -169.99 -4.19 17.27 16 18 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -5.23 5.75 56.52 0.33 -4.91 16 20 H -0.27 -5.01 6.39 56.52 0.36 -4.65 16 21 C 0.05 0.97 3.24 -2.84 -0.01 0.96 16 22 C -0.10 -1.53 9.06 -39.25 -0.36 -1.88 16 23 C -0.12 -1.59 9.38 -39.26 -0.37 -1.96 16 24 H 0.10 0.83 6.02 -52.48 -0.32 0.52 16 25 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 26 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 27 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 28 H 0.14 1.95 7.66 -52.49 -0.40 1.55 16 29 H 0.08 1.61 8.14 -51.92 -0.42 1.19 16 30 H 0.09 1.85 8.09 -51.93 -0.42 1.43 16 31 H 0.37 7.78 5.86 45.56 0.27 8.05 16 32 H 0.27 7.63 8.72 -40.82 -0.36 7.28 16 33 H 0.10 1.88 8.08 -51.93 -0.42 1.46 16 34 H 0.07 1.35 5.08 -51.93 -0.26 1.08 16 35 H 0.15 2.26 3.88 -52.49 -0.20 2.06 16 36 H 0.13 1.37 6.15 -52.49 -0.32 1.05 16 LS Contribution 300.25 15.07 4.52 4.52 Total: -1.00 -30.12 300.25 -6.72 -36.83 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -3.46 Total: 13.59 kcal Atomic # 6 Polarization: -5.47 SS G_CDS: -3.32 Total: -8.79 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: 0.11 Total: -37.37 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.38 Total: -26.05 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.19 Total: 17.27 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.12 -6.72 -36.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193138980.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.101 kcal (2) G-P(sol) polarization free energy of solvation -30.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds